Jena Library of Biological Macromolecules - Home Page [Image Library Home] [Image Library Entry]

Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF AN RBX1-UBC12~NEDD8-CUL1-DCN1 COMPLEX: A RING-E E2~UBIQUITIN-LIKE PROTEIN-SUBSTRATE INTERMEDIATE TRAPPED IN
Keywords NEDD8, CULLIN, NEDDYLATION, COMPLEX, UBC12, DCN1, UBIQUITIN,
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4P5O     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   CULLIN-1  A 327 2631 0
2  Protein   E3 UBIQUITIN-PROTEIN LIGASE RBX1  B 75 619 0
3  Protein   DCN1-LIKE PROTEIN 1  E 197 1614 0
4  Protein   NEDD8-CONJUGATING ENZYME UBC12  I 169 1363 11
5  Protein   NEDD8  K 76 591 0
6  Protein   CULLIN-1  C 322 2556 0
7  Protein   E3 UBIQUITIN-PROTEIN LIGASE RBX1  D 76 624 0
8  Protein   DCN1-LIKE PROTEIN 1  F 195 1594 0
9  Protein   NEDD8-CONJUGATING ENZYME UBC12  G 171 1373 11
10  Protein   NEDD8  H 76 584 0
11  Ligand   E3 UBIQUITIN-PROTEIN LIGASE RBX1  B 3 0 3
12  Ligand   E3 UBIQUITIN-PROTEIN LIGASE RBX1  D 3 0 3
total       1690 13549 28

Proteins
Unit 1 SER416 LYS417 SER418 PRO419 GLU420 GLU421 LEU422 ALA423 ARG424 TYR425 CYS426 ASP427 SER428 LEU429 LEU430 LYS431 LYS432 SER433 SER434 LYS435 ASN436 PRO437 GLU438 GLU439 ALA440 GLU441 LEU442 GLU443 ASP444 THR445 LEU446 ASN447 GLN448 VAL449 MET450 GLU451 LYS452 PHE453 LYS454 LYS455 ILE456 GLU457 ASP458 LYS459 ASP460 VAL461 PHE462 GLN463 LYS464 PHE465 TYR466 ALA467 LYS468 MET469 LEU470 ALA471 LYS472 ARG473 LEU474 VAL475 HIS476 GLN477 ASN478 SER479 ALA480 SER481 ASP482 ASP483 ALA484 GLU485 ALA486 SER487 MET488 ILE489 SER490 LYS491 LEU492 LYS493 GLN494 ALA495 CYS496 GLY497 PHE498 GLU499 TYR500 THR501 SER502 LYS503 LEU504 GLN505 ARG506 MET507 PHE508 GLN509 ASP510 ILE511 GLY512 VAL513 SER514 LYS515 ASP516 LEU517 ASN518 GLU519 GLN520 PHE521 LYS522 LYS523 HIS524 LEU525 THR526 ASN527 SER528 GLU529 PRO530 LEU531 ASP532 LEU533 ASP534 PHE535 SER536 ILE537 GLN538 VAL539 LEU540 SER541 SER542 GLY543 SER544 TRP545 PRO546 PHE547 GLN548 GLN549 SER550 CYS551 THR552 PHE553 ALA554 LEU555 PRO556 SER557 GLU558 LEU559 GLU560 ARG561 SER562 TYR563 GLN564 ARG565 PHE566 THR567 ALA568 PHE569 TYR570 ALA571 SER572 ARG573 HIS574 SER575 GLY576 ARG577 LYS578 LEU579 THR580 TRP581 LEU582 TYR583 GLN584 LEU585 SER586 LYS587 GLY588 GLU589 LEU590 VAL591 THR592 ASN593 CYS594 PHE595 LYS596 ASN597 ARG598 TYR599 THR600 LEU601 GLN602 ALA603 SER604 THR605 PHE606 GLN607 MET608 ALA609 ILE610 LEU611 LEU612 TYR620 THR621 VAL622 GLN623 GLN624 LEU625 THR626 ASP627 SER628 THR629 GLN630 ILE631 LYS632 MET633 ASP634 ILE635 LEU636 ALA637 GLN638 VAL639 LEU640 GLN641 ILE642 LEU643 LEU644 LYS645 SER646 LYS647 LEU648 PRO665 ASP666 THR667 LEU668 ILE669 ARG681 VAL682 ASN683 ILE684 ASN685 VAL686 PRO687 MET688 LYS689 THR690 GLU691 GLN692 LYS693 GLN694 GLU695 GLN696 GLU697 THR698 THR699 HIS700 LYS701 ASN702 ILE703 GLU704 GLU705 ASP706 ARG707 LYS708 LEU709 LEU710 ILE711 GLN712 ALA713 ALA714 ILE715 VAL716 ARG717 ILE718 MET719 ARG720 MET721 ARG722 LYS723 VAL724 LEU725 LYS726 HIS727 GLN728 GLN729 LEU730 LEU731 GLY732 GLU733 VAL734 LEU735 THR736 GLN737 LEU738 SER739 SER740 ARG741 PHE742 LYS743 PRO744 ARG745 VAL746 PRO747 VAL748 ILE749 LYS750 LYS751 CYS752 ILE753 ASP754 ILE755 LEU756 ILE757 GLU758 LYS759 GLU760 TYR761 LEU762 GLU763 ARG764 VAL765 ASP766 GLY767 GLU768 LYS769 ASP770 THR771 TYR772 SER773 TYR774 LEU775 ALA776
Unit 2 GLU23 VAL24 LYS25 LYS26 TRP27 ASN28 ALA29 VAL30 ALA31 LEU32 TRP33 ALA34 TRP35 ASP36 ILE37 VAL38 VAL39 ASP40 ASN41 CYS42 ALA43 ILE44 CYS45 ARG46 ASN47 HIS48 ILE49 MET50 ASP51 LEU52 CYS53 ILE54 GLU55 CYS56 GLN57 ALA58 ASN59 GLU67 CYS68 THR69 VAL70 ALA71 TRP72 GLY73 VAL74 CYS75 ASN76 HIS77 ALA78 PHE79 HIS80 PHE81 HIS82 CYS83 ILE84 SER85 ARG86 TRP87 LEU88 LYS89 THR90 ARG91 GLN92 VAL93 CYS94 PRO95 LEU96 ASP97 ASN98 ARG99 GLU100 TRP101 GLU102 PHE103 GLN104
Unit 3 ARG62 LYS63 LYS64 LEU65 GLU66 GLN67 LEU68 TYR69 ASN70 ARG71 TYR72 LYS73 ASP74 PRO75 GLN76 ASP77 GLU78 ASN79 LYS80 ILE81 GLY82 ILE83 ASP84 GLY85 ILE86 GLN87 GLN88 PHE89 CYS90 ASP91 ASP92 LEU93 ALA94 LEU95 ASP96 PRO97 ALA98 SER99 ILE100 SER101 VAL102 LEU103 ILE104 ILE105 ALA106 TRP107 LYS108 PHE109 ARG110 ALA111 ALA112 THR113 GLN114 CYS115 GLU116 PHE117 SER118 LYS119 GLN120 GLU121 PHE122 MET123 ASP124 GLY125 MET126 THR127 GLU128 LEU129 GLY130 CYS131 ASP132 SER133 ILE134 GLU135 LYS136 LEU137 LYS138 ALA139 GLN140 ILE141 PRO142 LYS143 MET144 GLU145 GLN146 GLU147 LEU148 LYS149 GLU150 PRO151 GLY152 ARG153 PHE154 LYS155 ASP156 PHE157 TYR158 GLN159 PHE160 THR161 PHE162 ASN163 PHE164 ALA165 LYS166 ASN167 PRO168 GLY169 GLN170 LYS171 GLY172 LEU173 ASP174 LEU175 GLU176 MET177 ALA178 ILE179 ALA180 TYR181 TRP182 ASN183 LEU184 VAL185 LEU186 ASN187 GLY188 ARG189 PHE190 LYS191 PHE192 LEU193 ASP194 LEU195 TRP196 ASN197 LYS198 PHE199 LEU200 LEU201 GLU202 HIS203 HIS204 LYS205 ARG206 SER207 ILE208 PRO209 LYS210 ASP211 THR212 TRP213 ASN214 LEU215 LEU216 LEU217 ASP218 PHE219 SER220 THR221 MET222 ILE223 ALA224 ASP225 ASP226 MET227 SER228 ASN229 TYR230 ASP231 GLU232 GLU233 GLY234 ALA235 TRP236 PRO237 VAL238 LEU239 ILE240 ASP241 ASP242 PHE243 VAL244 GLU245 PHE246 ALA247 ARG248 PRO249 GLN250 ILE251 ALA252 GLY253 THR254 LYS255 SER256 THR257 THR258
Unit 4 AME1 ILE2 LYS3 LEU4 PHE5 SER6 LEU7 LYS8 GLN9 GLN10 LYS11 LYS12 GLU13 ALA29 ALA30 GLN31 LEU32 ARG33 ILE34 GLN35 LYS36 ASP37 ILE38 ASN39 GLU40 LEU41 ASN42 LEU43 PRO44 LYS45 THR46 CYS47 ASP48 ILE49 SER50 PHE51 SER52 ASP53 PRO54 ASP55 ASP56 LEU57 LEU58 ASN59 PHE60 LYS61 LEU62 VAL63 ILE64 CYS65 PRO66 ASP67 GLU68 GLY69 PHE70 TYR71 LYS72 SER73 GLY74 LYS75 PHE76 VAL77 PHE78 SER79 PHE80 LYS81 VAL82 GLY83 GLN84 GLY85 TYR86 PRO87 HIS88 ASP89 PRO90 PRO91 LYS92 VAL93 LYS94 CYS95 GLU96 THR97 MET98 VAL99 TYR100 HIS101 PRO102 SER103 ILE104 ASP105 LEU106 GLU107 GLY108 ASN109 VAL110 SER111 LEU112 ASN113 ILE114 LEU115 ARG116 GLU117 ASP118 TRP119 LYS120 PRO121 VAL122 LEU123 THR124 ILE125 ASN126 SER127 ILE128 ILE129 TYR130 GLY131 LEU132 GLN133 TYR134 LEU135 PHE136 LEU137 GLU138 PRO139 ASN140 PRO141 GLU142 ASP143 PRO144 LEU145 ASN146 LYS147 GLU148 ALA149 ALA150 GLU151 VAL152 LEU153 GLN154 ASN155 ASN156 ARG157 ARG158 LEU159 PHE160 GLU161 GLN162 ASN163 VAL164 GLN165 ARG166 SER167 MET168 ARG169 GLY170 GLY171 TYR172 ILE173 GLY174 SER175 THR176 TYR177 PHE178 GLU179 ARG180 CYS181 LEU182 LYS183 HIS184
Unit 5 MET1 LEU2 ILE3 LYS4 VAL5 LYS6 THR7 LEU8 THR9 GLY10 LYS11 GLU12 ILE13 GLU14 ILE15 ASP16 ILE17 GLU18 PRO19 THR20 ASP21 LYS22 VAL23 GLU24 ARG25 ILE26 LYS27 GLU28 ARG29 VAL30 GLU31 GLU32 LYS33 GLU34 GLY35 ILE36 PRO37 PRO38 GLN39 GLN40 GLN41 ARG42 LEU43 ILE44 TYR45 SER46 GLY47 LYS48 GLN49 MET50 ASN51 ASP52 GLU53 LYS54 THR55 ALA56 ALA57 ASP58 TYR59 LYS60 ILE61 LEU62 GLY63 GLY64 SER65 VAL66 LEU67 HIS68 LEU69 VAL70 LEU71 ALA72 LEU73 ARG74 GLY75 GLY76
Unit 6 SER416 LYS417 SER418 PRO419 GLU420 GLU421 LEU422 ALA423 ARG424 TYR425 CYS426 ASP427 SER428 LEU429 LEU430 LYS431 LYS432 SER433 SER434 LYS435 ASN436 PRO437 GLU438 GLU439 ALA440 GLU441 LEU442 GLU443 ASP444 THR445 LEU446 ASN447 GLN448 VAL449 MET450 GLU451 LYS452 PHE453 LYS454 LYS455 ILE456 GLU457 ASP458 LYS459 ASP460 VAL461 PHE462 GLN463 LYS464 PHE465 TYR466 ALA467 LYS468 MET469 LEU470 ALA471 LYS472 ARG473 LEU474 VAL475 HIS476 GLN477 ASN478 SER479 ALA480 SER481 ASP482 ASP483 ALA484 GLU485 ALA486 SER487 MET488 ILE489 SER490 LYS491 LEU492 LYS493 GLN494 ALA495 CYS496 GLY497 PHE498 GLU499 TYR500 THR501 SER502 LYS503 LEU504 GLN505 ARG506 MET507 PHE508 GLN509 ASP510 ILE511 GLY512 VAL513 SER514 LYS515 ASP516 LEU517 ASN518 GLU519 GLN520 PHE521 LYS522 LYS523 HIS524 LEU525 THR526 ASN527 SER528 GLU529 PRO530 LEU531 ASP532 LEU533 ASP534 PHE535 SER536 ILE537 GLN538 VAL539 LEU540 SER541 SER542 GLY543 SER544 TRP545 PRO546 PHE547 GLN548 GLN549 SER550 CYS551 THR552 PHE553 ALA554 LEU555 PRO556 SER557 GLU558 LEU559 GLU560 ARG561 SER562 TYR563 GLN564 ARG565 PHE566 THR567 ALA568 PHE569 TYR570 ALA571 SER572 ARG573 HIS574 SER575 GLY576 ARG577 LYS578 LEU579 THR580 TRP581 LEU582 TYR583 GLN584 LEU585 SER586 LYS587 GLY588 GLU589 LEU590 VAL591 THR592 ASN593 CYS594 PHE595 LYS596 THR600 LEU601 GLN602 ALA603 SER604 THR605 PHE606 GLN607 MET608 ALA609 ILE610 TYR620 THR621 VAL622 GLN623 GLN624 LEU625 THR626 ASP627 SER628 THR629 GLN630 ILE631 LYS632 MET633 ASP634 ILE635 LEU636 ALA637 GLN638 VAL639 LEU640 GLN641 ILE642 LEU643 LEU644 LYS645 SER646 LYS647 LEU648 LEU649 PRO665 ASP666 THR667 LEU668 ILE669 VAL682 ASN683 ILE684 ASN685 VAL686 PRO687 MET688 LYS689 THR690 GLU691 GLN692 LYS693 GLN694 GLU695 GLN696 GLU697 THR698 THR699 HIS700 LYS701 ASN702 ILE703 GLU704 GLU705 ASP706 ARG707 LYS708 LEU709 LEU710 ILE711 GLN712 ALA713 ALA714 ILE715 VAL716 ARG717 ILE718 MET719 ARG720 MET721 ARG722 LYS723 VAL724 LEU725 LYS726 HIS727 GLN728 GLN729 LEU730 LEU731 GLY732 GLU733 VAL734 LEU735 THR736 GLN737 LEU738 SER739 SER740 ARG741 PHE742 LYS743 PRO744 ARG745 VAL746 PRO747 VAL748 ILE749 LYS750 LYS751 CYS752 ILE753 ASP754 ILE755 LEU756 ILE757 GLU758 LYS759 GLU760 TYR761 LEU762 GLU763 ARG764 VAL765 ASP766 GLY767 GLU768 LYS769 ASP770 THR771 TYR772 SER773 TYR774 LEU775 ALA776
Unit 7 GLU23 VAL24 LYS25 LYS26 TRP27 ASN28 ALA29 VAL30 ALA31 LEU32 TRP33 ALA34 TRP35 ASP36 ILE37 VAL38 VAL39 ASP40 ASN41 CYS42 ALA43 ILE44 CYS45 ARG46 ASN47 HIS48 ILE49 MET50 ASP51 LEU52 CYS53 ILE54 GLU55 CYS56 GLN57 ALA58 ASN59 GLU67 CYS68 THR69 VAL70 ALA71 TRP72 GLY73 VAL74 CYS75 ASN76 HIS77 ALA78 PHE79 HIS80 PHE81 HIS82 CYS83 ILE84 SER85 ARG86 TRP87 LEU88 LYS89 THR90 ARG91 GLN92 VAL93 CYS94 PRO95 LEU96 ASP97 ASN98 ARG99 GLU100 TRP101 GLU102 PHE103 GLN104 LYS105
Unit 8 LYS64 LEU65 GLU66 GLN67 LEU68 TYR69 ASN70 ARG71 TYR72 LYS73 ASP74 PRO75 GLN76 ASP77 GLU78 ASN79 LYS80 ILE81 GLY82 ILE83 ASP84 GLY85 ILE86 GLN87 GLN88 PHE89 CYS90 ASP91 ASP92 LEU93 ALA94 LEU95 ASP96 PRO97 ALA98 SER99 ILE100 SER101 VAL102 LEU103 ILE104 ILE105 ALA106 TRP107 LYS108 PHE109 ARG110 ALA111 ALA112 THR113 GLN114 CYS115 GLU116 PHE117 SER118 LYS119 GLN120 GLU121 PHE122 MET123 ASP124 GLY125 MET126 THR127 GLU128 LEU129 GLY130 CYS131 ASP132 SER133 ILE134 GLU135 LYS136 LEU137 LYS138 ALA139 GLN140 ILE141 PRO142 LYS143 MET144 GLU145 GLN146 GLU147 LEU148 LYS149 GLU150 PRO151 GLY152 ARG153 PHE154 LYS155 ASP156 PHE157 TYR158 GLN159 PHE160 THR161 PHE162 ASN163 PHE164 ALA165 LYS166 ASN167 PRO168 GLY169 GLN170 LYS171 GLY172 LEU173 ASP174 LEU175 GLU176 MET177 ALA178 ILE179 ALA180 TYR181 TRP182 ASN183 LEU184 VAL185 LEU186 ASN187 GLY188 ARG189 PHE190 LYS191 PHE192 LEU193 ASP194 LEU195 TRP196 ASN197 LYS198 PHE199 LEU200 LEU201 GLU202 HIS203 HIS204 LYS205 ARG206 SER207 ILE208 PRO209 LYS210 ASP211 THR212 TRP213 ASN214 LEU215 LEU216 LEU217 ASP218 PHE219 SER220 THR221 MET222 ILE223 ALA224 ASP225 ASP226 MET227 SER228 ASN229 TYR230 ASP231 GLU232 GLU233 GLY234 ALA235 TRP236 PRO237 VAL238 LEU239 ILE240 ASP241 ASP242 PHE243 VAL244 GLU245 PHE246 ALA247 ARG248 PRO249 GLN250 ILE251 ALA252 GLY253 THR254 LYS255 SER256 THR257 THR258
Unit 9 AME1 ILE2 LYS3 LEU4 PHE5 SER6 LEU7 LYS8 GLN9 GLN10 LYS11 LYS12 GLU13 GLU14 GLU15 ALA29 ALA30 GLN31 LEU32 ARG33 ILE34 GLN35 LYS36 ASP37 ILE38 ASN39 GLU40 LEU41 ASN42 LEU43 PRO44 LYS45 THR46 CYS47 ASP48 ILE49 SER50 PHE51 SER52 ASP53 PRO54 ASP55 ASP56 LEU57 LEU58 ASN59 PHE60 LYS61 LEU62 VAL63 ILE64 CYS65 PRO66 ASP67 GLU68 GLY69 PHE70 TYR71 LYS72 SER73 GLY74 LYS75 PHE76 VAL77 PHE78 SER79 PHE80 LYS81 VAL82 GLY83 GLN84 GLY85 TYR86 PRO87 HIS88 ASP89 PRO90 PRO91 LYS92 VAL93 LYS94 CYS95 GLU96 THR97 MET98 VAL99 TYR100 HIS101 PRO102 SER103 ILE104 ASP105 LEU106 GLU107 GLY108 ASN109 VAL110 SER111 LEU112 ASN113 ILE114 LEU115 ARG116 GLU117 ASP118 TRP119 LYS120 PRO121 VAL122 LEU123 THR124 ILE125 ASN126 SER127 ILE128 ILE129 TYR130 GLY131 LEU132 GLN133 TYR134 LEU135 PHE136 LEU137 GLU138 PRO139 ASN140 PRO141 GLU142 ASP143 PRO144 LEU145 ASN146 LYS147 GLU148 ALA149 ALA150 GLU151 VAL152 LEU153 GLN154 ASN155 ASN156 ARG157 ARG158 LEU159 PHE160 GLU161 GLN162 ASN163 VAL164 GLN165 ARG166 SER167 MET168 ARG169 GLY170 GLY171 TYR172 ILE173 GLY174 SER175 THR176 TYR177 PHE178 GLU179 ARG180 CYS181 LEU182 LYS183 HIS184
Unit 10 MET1 LEU2 ILE3 LYS4 VAL5 LYS6 THR7 LEU8 THR9 GLY10 LYS11 GLU12 ILE13 GLU14 ILE15 ASP16 ILE17 GLU18 PRO19 THR20 ASP21 LYS22 VAL23 GLU24 ARG25 ILE26 LYS27 GLU28 ARG29 VAL30 GLU31 GLU32 LYS33 GLU34 GLY35 ILE36 PRO37 PRO38 GLN39 GLN40 GLN41 ARG42 LEU43 ILE44 TYR45 SER46 GLY47 LYS48 GLN49 MET50 ASN51 ASP52 GLU53 LYS54 THR55 ALA56 ALA57 ASP58 TYR59 LYS60 ILE61 LEU62 GLY63 GLY64 SER65 VAL66 LEU67 HIS68 LEU69 VAL70 LEU71 ALA72 LEU73 ARG74 GLY75 GLY76

Ligands
Unit 11 ZN201 ZN202 ZN203
Unit 12 ZN201 ZN202 ZN203

Go to    [Image Library Home]    [Image Library Entry]
Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany