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Title | STRUCTURE OF AN ANTI-METHOTREXATE CDR1-3 GRAFT VHH ANTIBODY WITH METHOTREXATE | |
Keywords | CAMELID SINGLE DOMAIN ANTIBODY, HEAVY CHAIN ONLY, VHH, ANTIB ANTI-HAPTEN ANTIBODY, CDR, HAPTEN BINDING, SMALL MOLECULE S LIGAND BINDING, LOW MOLECULAR WEIGHT COMPOUND, METHOTREXATE SYSTEM | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 3QXT | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | ANTI-METHOTREXATE CDR1-3 GRAFT VHH | A | 124 | 952 | 0 |
2 | Protein | ANTI-METHOTREXATE CDR1-3 GRAFT VHH | B | 124 | 952 | 0 |
3 | Ligand | ANTI-METHOTREXATE CDR1-3 GRAFT VHH | A | 3 | 0 | 35 |
4 | Ligand | ANTI-METHOTREXATE CDR1-3 GRAFT VHH | B | 4 | 0 | 36 |
5 | Water | 222 | 0 | 222 | ||
total | 477 | 1904 | 293 |
Unit 1 | GLN3 VAL4 GLN5 LEU6 VAL7 GLU8 SER9 GLY10 GLY11 GLY12 LEU13 VAL14 GLN15 ALA16 GLY17 GLY18 SER19 LEU20 ARG21 LEU22 SER23 CYS24 ALA25 ALA26 SER27 ARG28 ARG29 SER30 SER31 ARG32 SER33 TRP34 ALA35 MET36 ALA37 TRP38 PHE39 ARG40 GLN41 ALA42 PRO43 GLY44 LYS45 GLU46 ARG47 GLU48 PHE49 VAL50 ALA51 LYS52 ILE53 SER54 GLY55 ASP56 GLY57 ARG58 LEU59 THR60 THR61 TYR62 GLY63 ASP64 SER65 VAL66 LYS67 GLY68 ARG69 PHE70 THR71 ILE72 SER73 ARG74 ASP75 LYS76 GLY77 LYS78 ASN79 THR80 VAL81 TYR82 LEU83 GLN84 MET85 ASP86 SER87 LEU88 LYS89 PRO90 GLU91 ASP92 THR93 ALA94 VAL95 TYR96 TYR97 CYS98 ALA99 ALA100 ASP101 ASP102 ASN103 TYR104 VAL105 THR106 ALA107 SER108 TRP109 ARG110 SER111 GLY112 PRO113 ASP119 TYR120 TRP121 GLY122 GLN123 GLY124 THR125 GLN126 VAL127 THR128 VAL129 SER130 SER131 |
Unit 2 | GLN3 VAL4 GLN5 LEU6 VAL7 GLU8 SER9 GLY10 GLY11 GLY12 LEU13 VAL14 GLN15 ALA16 GLY17 GLY18 SER19 LEU20 ARG21 LEU22 SER23 CYS24 ALA25 ALA26 SER27 ARG28 ARG29 SER30 SER31 ARG32 SER33 TRP34 ALA35 MET36 ALA37 TRP38 PHE39 ARG40 GLN41 ALA42 PRO43 GLY44 LYS45 GLU46 ARG47 GLU48 PHE49 VAL50 ALA51 LYS52 ILE53 SER54 GLY55 ASP56 GLY57 ARG58 LEU59 THR60 THR61 TYR62 GLY63 ASP64 SER65 VAL66 LYS67 GLY68 ARG69 PHE70 THR71 ILE72 SER73 ARG74 ASP75 LYS76 GLY77 LYS78 ASN79 THR80 VAL81 TYR82 LEU83 GLN84 MET85 ASP86 SER87 LEU88 LYS89 PRO90 GLU91 ASP92 THR93 ALA94 VAL95 TYR96 TYR97 CYS98 ALA99 ALA100 ASP101 ASP102 ASN103 TYR104 VAL105 THR106 ALA107 SER108 TRP109 ARG110 SER111 GLY112 PRO113 ASP119 TYR120 TRP121 GLY122 GLN123 GLY124 THR125 GLN126 VAL127 THR128 VAL129 SER130 SER131 |
Unit 3 | NA132 NA133 MTX2000 |
Unit 4 | NA132 NA133 NA134 MTX2000 |
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |