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Sequence, Chains, Asymmetric and Biological Units

Title HIBISCUS LATENT SINGAPORE VIRUS
Keywords HELICAL VIRUS, VIRUS-RNA COMPLEX, VIRUS
Experiment fiber diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3PDM     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    R 3 64 0
2  Protein   COAT PROTEIN  P 162 1565 0
total       165 1629 0

Proteins
Unit 2 PRO1 TYR2 LEU3 ASN4 LEU5 THR6 PRO7 LEU8 ASN9 LEU10 ILE11 TYR12 THR13 SER14 GLY15 THR16 PHE17 ALA18 PRO19 TYR20 ASP21 VAL22 PHE23 LEU24 GLU25 ILE26 LEU27 VAL28 LYS29 SER30 ARG31 SER32 ASN33 SER34 PHE35 GLN36 THR37 GLN38 ALA39 GLY40 ARG41 ASP42 THR43 LEU44 ARG45 GLU46 GLN47 LEU48 ILE49 ASN50 SER51 LEU52 GLN53 ILE54 VAL55 ALA56 ASN57 LEU58 ASN59 THR60 ARG61 TYR62 PRO63 LEU64 LEU65 GLY66 PHE67 TYR68 VAL69 TRP70 VAL71 ARG72 ASN73 PRO74 THR75 LEU76 ALA77 PRO78 VAL79 PHE80 GLU81 ALA82 LEU83 LEU84 ARG85 ALA86 THR87 ASP88 THR89 LYS90 ASN91 ARG92 ILE93 ILE94 GLU95 VAL96 GLU97 GLU98 GLU99 SER100 ARG101 PRO102 THR103 THR104 ALA105 GLU106 THR107 LEU108 ASN109 ALA110 THR111 GLN112 ARG113 VAL114 ASP115 ASP116 ALA117 THR118 VAL119 ALA120 ILE121 HIS122 LYS123 GLU124 ILE125 ASP126 ASN127 ILE128 LEU129 LEU130 LEU131 LEU132 GLN133 GLY134 GLY135 THR136 ALA137 VAL138 TYR139 ASP140 ARG141 THR142 ALA143 PHE144 GLU145 VAL146 ALA147 SER148 GLY149 LEU150 SER151 TRP152 ALA153 ASP154 PRO155 THR156 THR157 THR158 SER159 THR160 THR161 THR162

Nucleic acids
Unit 1 G1 A2 A3

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany