3I8D - Sequence, Chains, Asymmetric and Biological Units

• Title: THE PAIRING GEOMETRY OF THE HYDROPHOBIC THYMINE ANALOG 2,4- DIFLUOROTOLUENE IN DUPLEX DNA AS ANALYZED BY X-RAY CRYSTALL
• Keywords: RNASE-H, RNASE-H DNA-COMPLEX, 2, 4-DIFLUOROTOLUENE, THYMINE HYDROPHOBIC BASE, ENDONUCLEASE, HYDROLASE, MAGNESIUM, MANGA METAL-BINDING, NUCLEASE, HYDROLASE-DNA COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3I8D	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	RIBONUCLEASE H	A	132	1077	0
2	Other macromolecule	5'-D(*CP*GP*CP*GP*AP*AP*TP*(DFT)P*CP*GP*CP*G)-3'	B	12	223	20
3	Protein	RIBONUCLEASE H	C	132	1077	0
4	Other macromolecule	5'-D(*CP*GP*CP*GP*AP*AP*TP*(DFT)P*CP*GP*CP*G)-3'	D	12	223	20
5	Ligand	RIBONUCLEASE H	A	1	0	6
6	Ligand	RIBONUCLEASE H	C	3	0	18
7	Water			231	0	231
total				523	2600	295

Proteins

Unit 1

GLU 62 ILE 63 ILE 64 TRP 65 GLU 66 SER 67 LEU 68 SER 69 VAL 70 ASP 71 VAL 72 GLY 73 SER 74 GLN 75 GLY 76 ASN 77 PRO 78 GLY 79 ILE 80 VAL 81 GLU 82 TYR 83 LYS 84 GLY 85 VAL 86 ASP 87 THR 88 LYS 89 THR 90 GLY 91 GLU 92 VAL 93 LEU 94 PHE 95 GLU 96 ARG 97 GLU 98 PRO 99 ILE 100 PRO 101 ILE 102 GLY 103 THR 104 ASN 105 ASN 106 MET 107 GLY 108 GLU 109 PHE 110 LEU 111 ALA 112 ILE 113 VAL 114 HIS 115 GLY 116 LEU 117 ARG 118 TYR 119 LEU 120 LYS 121 GLU 122 ARG 123 ASN 124 SER 125 ARG 126 LYS 127 PRO 128 ILE 129 TYR 130 SER 131 ASN 132 SER 133 GLN 134 THR 135 ALA 136 ILE 137 LYS 138 TRP 139 VAL 140 LYS 141 ASP 142 LYS 143 LYS 144 ALA 145 LYS 146 SER 147 THR 148 LEU 149 VAL 150 ARG 151 ASN 152 GLU 153 GLU 154 THR 155 ALA 156 LEU 157 ILE 158 TRP 159 LYS 160 LEU 161 VAL 162 ASP 163 GLU 164 ALA 165 GLU 166 GLU 167 TRP 168 LEU 169 ASN 170 THR 171 HIS 172 THR 173 TYR 174 GLU 175 THR 176 PRO 177 ILE 178 LEU 179 LYS 180 TRP 181 GLN 182 THR 183 ASP 184 LYS 185 TRP 186 GLY 187 GLU 188 ILE 189 LYS 190 ALA 191 ASP 192 TYR 193

Unit 3

GLU 62 ILE 63 ILE 64 TRP 65 GLU 66 SER 67 LEU 68 SER 69 VAL 70 ASP 71 VAL 72 GLY 73 SER 74 GLN 75 GLY 76 ASN 77 PRO 78 GLY 79 ILE 80 VAL 81 GLU 82 TYR 83 LYS 84 GLY 85 VAL 86 ASP 87 THR 88 LYS 89 THR 90 GLY 91 GLU 92 VAL 93 LEU 94 PHE 95 GLU 96 ARG 97 GLU 98 PRO 99 ILE 100 PRO 101 ILE 102 GLY 103 THR 104 ASN 105 ASN 106 MET 107 GLY 108 GLU 109 PHE 110 LEU 111 ALA 112 ILE 113 VAL 114 HIS 115 GLY 116 LEU 117 ARG 118 TYR 119 LEU 120 LYS 121 GLU 122 ARG 123 ASN 124 SER 125 ARG 126 LYS 127 PRO 128 ILE 129 TYR 130 SER 131 ASN 132 SER 133 GLN 134 THR 135 ALA 136 ILE 137 LYS 138 TRP 139 VAL 140 LYS 141 ASP 142 LYS 143 LYS 144 ALA 145 LYS 146 SER 147 THR 148 LEU 149 VAL 150 ARG 151 ASN 152 GLU 153 GLU 154 THR 155 ALA 156 LEU 157 ILE 158 TRP 159 LYS 160 LEU 161 VAL 162 ASP 163 GLU 164 ALA 165 GLU 166 GLU 167 TRP 168 LEU 169 ASN 170 THR 171 HIS 172 THR 173 TYR 174 GLU 175 THR 176 PRO 177 ILE 178 LEU 179 LYS 180 TRP 181 GLN 182 THR 183 ASP 184 LYS 185 TRP 186 GLY 187 GLU 188 ILE 189 LYS 190 ALA 191 ASP 192 TYR 193

Other macromolecules

Unit 2	DC 1 DG 2 DC 3 DG 4 DA 5 DA 6 DT 7 DFT 8 DC 9 DG 10 DC 11 DG 12
Unit 4	DC 1 DG 2 DC 3 DG 4 DA 5 DA 6 DT 7 DFT 8 DC 9 DG 10 DC 11 DG 12

Ligands

Unit 5	GOL 601
Unit 6	GOL 602 GOL 603 GOL 604