3EZJ - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF THE SECRETIN G ETEC DETERMINED WITH THE ASSISTANCE OF A NANOBODY
• Keywords: GENERAL SECRETORY PATHWAY, SECRETIN, SINGLE CHAIN ANTIBODY, TRANSPORT, IMMUNE SYSTEM, COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3EZJ	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	GENERAL SECRETION PATHWAY PROTEIN GSPD	A	198	1535	0
2	Protein	GENERAL SECRETION PATHWAY PROTEIN GSPD	C	197	1525	0
3	Protein	GENERAL SECRETION PATHWAY PROTEIN GSPD	E	197	1524	0
4	Protein	GENERAL SECRETION PATHWAY PROTEIN GSPD	G	199	1540	0
5	Protein	NANOBODY NBGSPD_7	B	120	904	0
6	Protein	NANOBODY NBGSPD_7	D	120	904	0
7	Protein	NANOBODY NBGSPD_7	F	120	904	0
8	Protein	NANOBODY NBGSPD_7	H	120	904	0
9	Ligand	GENERAL SECRETION PATHWAY PROTEIN GSPD	A	1	0	5
10	Ligand	GENERAL SECRETION PATHWAY PROTEIN GSPD	C	1	0	5
11	Ligand	GENERAL SECRETION PATHWAY PROTEIN GSPD	E	1	0	5
12	Ligand	GENERAL SECRETION PATHWAY PROTEIN GSPD	G	1	0	5
13	Ligand	NANOBODY NBGSPD_7	B	2	0	6
14	Ligand	NANOBODY NBGSPD_7	D	2	0	6
15	Ligand	NANOBODY NBGSPD_7	F	2	0	6
16	Ligand	NANOBODY NBGSPD_7	H	2	0	6
17	Water			264	0	264
total				1547	9740	308

Proteins

Unit 1	ALA 3 THR 4 PHE 5 THR 6 ALA 7 ASN 8 PHE 9 LYS 10 ASP 11 THR 12 ASP 13 LEU 14 LYS 15 SER 16 PHE 17 ILE 18 GLU 19 THR 20 VAL 21 GLY 22 ALA 23 ASN 24 LEU 25 ASN 26 LYS 27 THR 28 ILE 29 ILE 30 MET 31 VAL 35 GLN 36 GLY 37 ALA 38 VAL 39 SER 40 ILE 41 ARG 42 THR 43 MET 44 THR 45 PRO 46 LEU 47 ASN 48 GLU 49 ARG 50 GLN 51 TYR 52 TYR 53 GLN 54 LEU 55 PHE 56 LEU 57 ASN 58 LEU 59 LEU 60 GLU 61 ALA 62 GLN 63 GLY 64 TYR 65 ALA 66 VAL 67 VAL 68 PRO 69 MET 70 GLU 71 ASN 72 ASP 73 VAL 74 LEU 75 LYS 76 VAL 77 VAL 78 LYS 79 SER 80 GLY 100 ASP 101 GLU 102 MET 103 VAL 104 THR 105 LYS 106 VAL 107 VAL 108 PRO 109 VAL 110 ARG 111 ASN 112 VAL 113 SER 114 VAL 115 ARG 116 GLU 117 LEU 118 ALA 119 PRO 120 ILE 121 LEU 122 ARG 123 GLN 124 MET 125 ILE 126 ASP 127 SER 128 ALA 129 GLY 130 SER 131 GLY 132 ASN 133 VAL 134 VAL 135 ASN 136 TYR 137 ASP 138 PRO 139 SER 140 ASN 141 VAL 142 ILE 143 MET 144 LEU 145 THR 146 GLY 147 ARG 148 ALA 149 SER 150 VAL 151 VAL 152 GLU 153 ARG 154 LEU 155 THR 156 GLU 157 VAL 158 ILE 159 GLN 160 ARG 161 VAL 162 ASP 163 HIS 164 ALA 165 GLY 166 ASN 167 ARG 168 THR 169 GLU 170 GLU 171 VAL 172 ILE 173 PRO 174 LEU 175 ASP 176 ASN 177 ALA 178 SER 179 ALA 180 SER 181 GLU 182 ILE 183 ALA 184 ARG 185 VAL 186 LEU 187 GLU 188 SER 189 LEU 190 THR 191 GLN 205 ILE 206 VAL 207 ALA 208 ASP 209 GLU 210 ARG 211 THR 212 ASN 213 SER 214 VAL 215 ILE 216 VAL 217 SER 218 GLY 219 ASP 220 PRO 221 ALA 222 THR 223 ARG 224 ASP 225 LYS 226 MET 227 ARG 228 ARG 229 LEU 230 ILE 231 ARG 232 ARG 233 LEU 234 ASP 235
Unit 2	ALA 3 THR 4 PHE 5 THR 6 ALA 7 ASN 8 PHE 9 LYS 10 ASP 11 THR 12 ASP 13 LEU 14 LYS 15 SER 16 PHE 17 ILE 18 GLU 19 THR 20 VAL 21 GLY 22 ALA 23 ASN 24 LEU 25 ASN 26 LYS 27 THR 28 ILE 29 ILE 30 MET 31 VAL 35 GLN 36 GLY 37 ALA 38 VAL 39 SER 40 ILE 41 ARG 42 THR 43 MET 44 THR 45 PRO 46 LEU 47 ASN 48 GLU 49 ARG 50 GLN 51 TYR 52 TYR 53 GLN 54 LEU 55 PHE 56 LEU 57 ASN 58 LEU 59 LEU 60 GLU 61 ALA 62 GLN 63 GLY 64 TYR 65 ALA 66 VAL 67 VAL 68 PRO 69 MET 70 GLU 71 ASN 72 ASP 73 VAL 74 LEU 75 LYS 76 VAL 77 VAL 78 ALA 99 GLY 100 ASP 101 GLU 102 MET 103 VAL 104 THR 105 LYS 106 VAL 107 VAL 108 PRO 109 VAL 110 ARG 111 ASN 112 VAL 113 SER 114 VAL 115 ARG 116 GLU 117 LEU 118 ALA 119 PRO 120 ILE 121 LEU 122 ARG 123 GLN 124 MET 125 ILE 126 ASP 127 SER 128 ALA 129 GLY 130 SER 131 GLY 132 ASN 133 VAL 134 VAL 135 ASN 136 TYR 137 ASP 138 PRO 139 SER 140 ASN 141 VAL 142 ILE 143 MET 144 LEU 145 THR 146 GLY 147 ARG 148 ALA 149 SER 150 VAL 151 VAL 152 GLU 153 ARG 154 LEU 155 THR 156 GLU 157 VAL 158 ILE 159 GLN 160 ARG 161 VAL 162 ASP 163 HIS 164 ALA 165 GLY 166 ASN 167 ARG 168 THR 169 GLU 170 GLU 171 VAL 172 ILE 173 PRO 174 LEU 175 ASP 176 ASN 177 ALA 178 SER 179 ALA 180 SER 181 GLU 182 ILE 183 ALA 184 ARG 185 VAL 186 LEU 187 GLU 188 SER 189 LEU 190 THR 191 GLN 205 ILE 206 VAL 207 ALA 208 ASP 209 GLU 210 ARG 211 THR 212 ASN 213 SER 214 VAL 215 ILE 216 VAL 217 SER 218 GLY 219 ASP 220 PRO 221 ALA 222 THR 223 ARG 224 ASP 225 LYS 226 MET 227 ARG 228 ARG 229 LEU 230 ILE 231 ARG 232 ARG 233 LEU 234 ASP 235
Unit 3	THR 4 PHE 5 THR 6 ALA 7 ASN 8 PHE 9 LYS 10 ASP 11 THR 12 ASP 13 LEU 14 LYS 15 SER 16 PHE 17 ILE 18 GLU 19 THR 20 VAL 21 GLY 22 ALA 23 ASN 24 LEU 25 ASN 26 LYS 27 THR 28 ILE 29 ILE 30 MET 31 GLY 32 VAL 35 GLN 36 GLY 37 ALA 38 VAL 39 SER 40 ILE 41 ARG 42 THR 43 MET 44 THR 45 PRO 46 LEU 47 ASN 48 GLU 49 ARG 50 GLN 51 TYR 52 TYR 53 GLN 54 LEU 55 PHE 56 LEU 57 ASN 58 LEU 59 LEU 60 GLU 61 ALA 62 GLN 63 GLY 64 TYR 65 ALA 66 VAL 67 VAL 68 PRO 69 MET 70 GLU 71 ASN 72 ASP 73 VAL 74 LEU 75 LYS 76 VAL 77 VAL 78 ALA 99 GLY 100 ASP 101 GLU 102 MET 103 VAL 104 THR 105 LYS 106 VAL 107 VAL 108 PRO 109 VAL 110 ARG 111 ASN 112 VAL 113 SER 114 VAL 115 ARG 116 GLU 117 LEU 118 ALA 119 PRO 120 ILE 121 LEU 122 ARG 123 GLN 124 MET 125 ILE 126 ASP 127 SER 128 ALA 129 GLY 130 SER 131 GLY 132 ASN 133 VAL 134 VAL 135 ASN 136 TYR 137 ASP 138 PRO 139 SER 140 ASN 141 VAL 142 ILE 143 MET 144 LEU 145 THR 146 GLY 147 ARG 148 ALA 149 SER 150 VAL 151 VAL 152 GLU 153 ARG 154 LEU 155 THR 156 GLU 157 VAL 158 ILE 159 GLN 160 ARG 161 VAL 162 ASP 163 HIS 164 ALA 165 GLY 166 ASN 167 ARG 168 THR 169 GLU 170 GLU 171 VAL 172 ILE 173 PRO 174 LEU 175 ASP 176 ASN 177 ALA 178 SER 179 ALA 180 SER 181 GLU 182 ILE 183 ALA 184 ARG 185 VAL 186 LEU 187 GLU 188 SER 189 LEU 190 THR 191 GLN 205 ILE 206 VAL 207 ALA 208 ASP 209 GLU 210 ARG 211 THR 212 ASN 213 SER 214 VAL 215 ILE 216 VAL 217 SER 218 GLY 219 ASP 220 PRO 221 ALA 222 THR 223 ARG 224 ASP 225 LYS 226 MET 227 ARG 228 ARG 229 LEU 230 ILE 231 ARG 232 ARG 233 LEU 234 ASP 235
Unit 4	ALA 3 THR 4 PHE 5 THR 6 ALA 7 ASN 8 PHE 9 LYS 10 ASP 11 THR 12 ASP 13 LEU 14 LYS 15 SER 16 PHE 17 ILE 18 GLU 19 THR 20 VAL 21 GLY 22 ALA 23 ASN 24 LEU 25 ASN 26 LYS 27 THR 28 ILE 29 ILE 30 MET 31 VAL 35 GLN 36 GLY 37 ALA 38 VAL 39 SER 40 ILE 41 ARG 42 THR 43 MET 44 THR 45 PRO 46 LEU 47 ASN 48 GLU 49 ARG 50 GLN 51 TYR 52 TYR 53 GLN 54 LEU 55 PHE 56 LEU 57 ASN 58 LEU 59 LEU 60 GLU 61 ALA 62 GLN 63 GLY 64 TYR 65 ALA 66 VAL 67 VAL 68 PRO 69 MET 70 GLU 71 ASN 72 ASP 73 VAL 74 LEU 75 LYS 76 VAL 77 VAL 78 LYS 79 SER 80 ALA 99 GLY 100 ASP 101 GLU 102 MET 103 VAL 104 THR 105 LYS 106 VAL 107 VAL 108 PRO 109 VAL 110 ARG 111 ASN 112 VAL 113 SER 114 VAL 115 ARG 116 GLU 117 LEU 118 ALA 119 PRO 120 ILE 121 LEU 122 ARG 123 GLN 124 MET 125 ILE 126 ASP 127 SER 128 ALA 129 GLY 130 SER 131 GLY 132 ASN 133 VAL 134 VAL 135 ASN 136 TYR 137 ASP 138 PRO 139 SER 140 ASN 141 VAL 142 ILE 143 MET 144 LEU 145 THR 146 GLY 147 ARG 148 ALA 149 SER 150 VAL 151 VAL 152 GLU 153 ARG 154 LEU 155 THR 156 GLU 157 VAL 158 ILE 159 GLN 160 ARG 161 VAL 162 ASP 163 HIS 164 ALA 165 GLY 166 ASN 167 ARG 168 THR 169 GLU 170 GLU 171 VAL 172 ILE 173 PRO 174 LEU 175 ASP 176 ASN 177 ALA 178 SER 179 ALA 180 SER 181 GLU 182 ILE 183 ALA 184 ARG 185 VAL 186 LEU 187 GLU 188 SER 189 LEU 190 THR 191 GLN 205 ILE 206 VAL 207 ALA 208 ASP 209 GLU 210 ARG 211 THR 212 ASN 213 SER 214 VAL 215 ILE 216 VAL 217 SER 218 GLY 219 ASP 220 PRO 221 ALA 222 THR 223 ARG 224 ASP 225 LYS 226 MET 227 ARG 228 ARG 229 LEU 230 ILE 231 ARG 232 ARG 233 LEU 234 ASP 235
Unit 5	GLN 1 VAL 2 GLN 3 LEU 4 GLN 5 GLU 6 SER 7 GLY 8 GLY 9 GLY 10 LEU 11 VAL 12 GLN 13 ALA 14 GLY 15 GLY 16 SER 17 LEU 18 ARG 19 LEU 20 SER 21 CYS 22 ALA 23 ALA 24 SER 25 GLY 26 SER 27 ILE 28 PHE 29 SER 30 ILE 31 ASN 32 SER 33 MET 34 ASP 35 TRP 36 ASP 37 ARG 38 GLN 39 ALA 40 PRO 41 GLY 42 LYS 43 GLN 44 ARG 45 GLU 46 LEU 47 VAL 48 ALA 49 THR 50 ILE 51 THR 52 SER 53 GLY 54 GLY 55 SER 56 THR 57 ASN 58 TYR 59 ALA 60 ASP 61 SER 62 VAL 63 LYS 64 GLY 65 ARG 66 PHE 67 THR 68 ILE 69 SER 70 ARG 71 ASP 72 ASN 73 ALA 74 LYS 75 ASN 76 THR 77 VAL 78 TYR 79 LEU 80 GLN 81 MET 82 ASN 83 SER 84 LEU 85 LYS 86 PRO 87 GLU 88 ASP 89 THR 90 ALA 91 VAL 92 TYR 93 TYR 94 CYS 95 ASN 96 ALA 97 ASN 98 VAL 99 LYS 100 THR 101 TRP 102 ALA 103 GLY 104 MET 105 THR 106 ARG 107 ASP 108 TYR 109 TRP 110 GLY 111 GLN 112 GLY 113 THR 114 GLN 115 VAL 116 THR 117 VAL 118 SER 119 SER 120
Unit 6	GLN 1 VAL 2 GLN 3 LEU 4 GLN 5 GLU 6 SER 7 GLY 8 GLY 9 GLY 10 LEU 11 VAL 12 GLN 13 ALA 14 GLY 15 GLY 16 SER 17 LEU 18 ARG 19 LEU 20 SER 21 CYS 22 ALA 23 ALA 24 SER 25 GLY 26 SER 27 ILE 28 PHE 29 SER 30 ILE 31 ASN 32 SER 33 MET 34 ASP 35 TRP 36 ASP 37 ARG 38 GLN 39 ALA 40 PRO 41 GLY 42 LYS 43 GLN 44 ARG 45 GLU 46 LEU 47 VAL 48 ALA 49 THR 50 ILE 51 THR 52 SER 53 GLY 54 GLY 55 SER 56 THR 57 ASN 58 TYR 59 ALA 60 ASP 61 SER 62 VAL 63 LYS 64 GLY 65 ARG 66 PHE 67 THR 68 ILE 69 SER 70 ARG 71 ASP 72 ASN 73 ALA 74 LYS 75 ASN 76 THR 77 VAL 78 TYR 79 LEU 80 GLN 81 MET 82 ASN 83 SER 84 LEU 85 LYS 86 PRO 87 GLU 88 ASP 89 THR 90 ALA 91 VAL 92 TYR 93 TYR 94 CYS 95 ASN 96 ALA 97 ASN 98 VAL 99 LYS 100 THR 101 TRP 102 ALA 103 GLY 104 MET 105 THR 106 ARG 107 ASP 108 TYR 109 TRP 110 GLY 111 GLN 112 GLY 113 THR 114 GLN 115 VAL 116 THR 117 VAL 118 SER 119 SER 120
Unit 7	GLN 1 VAL 2 GLN 3 LEU 4 GLN 5 GLU 6 SER 7 GLY 8 GLY 9 GLY 10 LEU 11 VAL 12 GLN 13 ALA 14 GLY 15 GLY 16 SER 17 LEU 18 ARG 19 LEU 20 SER 21 CYS 22 ALA 23 ALA 24 SER 25 GLY 26 SER 27 ILE 28 PHE 29 SER 30 ILE 31 ASN 32 SER 33 MET 34 ASP 35 TRP 36 ASP 37 ARG 38 GLN 39 ALA 40 PRO 41 GLY 42 LYS 43 GLN 44 ARG 45 GLU 46 LEU 47 VAL 48 ALA 49 THR 50 ILE 51 THR 52 SER 53 GLY 54 GLY 55 SER 56 THR 57 ASN 58 TYR 59 ALA 60 ASP 61 SER 62 VAL 63 LYS 64 GLY 65 ARG 66 PHE 67 THR 68 ILE 69 SER 70 ARG 71 ASP 72 ASN 73 ALA 74 LYS 75 ASN 76 THR 77 VAL 78 TYR 79 LEU 80 GLN 81 MET 82 ASN 83 SER 84 LEU 85 LYS 86 PRO 87 GLU 88 ASP 89 THR 90 ALA 91 VAL 92 TYR 93 TYR 94 CYS 95 ASN 96 ALA 97 ASN 98 VAL 99 LYS 100 THR 101 TRP 102 ALA 103 GLY 104 MET 105 THR 106 ARG 107 ASP 108 TYR 109 TRP 110 GLY 111 GLN 112 GLY 113 THR 114 GLN 115 VAL 116 THR 117 VAL 118 SER 119 SER 120
Unit 8	GLN 1 VAL 2 GLN 3 LEU 4 GLN 5 GLU 6 SER 7 GLY 8 GLY 9 GLY 10 LEU 11 VAL 12 GLN 13 ALA 14 GLY 15 GLY 16 SER 17 LEU 18 ARG 19 LEU 20 SER 21 CYS 22 ALA 23 ALA 24 SER 25 GLY 26 SER 27 ILE 28 PHE 29 SER 30 ILE 31 ASN 32 SER 33 MET 34 ASP 35 TRP 36 ASP 37 ARG 38 GLN 39 ALA 40 PRO 41 GLY 42 LYS 43 GLN 44 ARG 45 GLU 46 LEU 47 VAL 48 ALA 49 THR 50 ILE 51 THR 52 SER 53 GLY 54 GLY 55 SER 56 THR 57 ASN 58 TYR 59 ALA 60 ASP 61 SER 62 VAL 63 LYS 64 GLY 65 ARG 66 PHE 67 THR 68 ILE 69 SER 70 ARG 71 ASP 72 ASN 73 ALA 74 LYS 75 ASN 76 THR 77 VAL 78 TYR 79 LEU 80 GLN 81 MET 82 ASN 83 SER 84 LEU 85 LYS 86 PRO 87 GLU 88 ASP 89 THR 90 ALA 91 VAL 92 TYR 93 TYR 94 CYS 95 ASN 96 ALA 97 ASN 98 VAL 99 LYS 100 THR 101 TRP 102 ALA 103 GLY 104 MET 105 THR 106 ARG 107 ASP 108 TYR 109 TRP 110 GLY 111 GLN 112 GLY 113 THR 114 GLN 115 VAL 116 THR 117 VAL 118 SER 119 SER 120

Ligands

Unit 9	PO4 238
Unit 10	PO4 238
Unit 11	PO4 238
Unit 12	PO4 238
Unit 13	PO4 127 CL 128
Unit 14	PO4 127 CL 128
Unit 15	PO4 127 CL 128
Unit 16	PO4 127 CL 128