3EZJ - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF THE SECRETIN GSPD FROM ETEC DETERMINED WITH THE ASSISTANCE OF A NANOBODY

Authors :   K. V Korotkov, E. Pardon, J. Steyaert, W. G. Hol

Date :   22 Oct 08 (Deposition) - 17 Feb 09 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.80

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A (1x),B (1x),E (1x),F (1x)
Biol. Unit 2: A,B,E,F  (1x)
Biol. Unit 3: C (1x),D (1x),G (1x),H (1x)
Biol. Unit 4: C,D,G,H  (1x)

Keywords :   General Secretory Pathway, Secretin, Single Chain Antibody, Protein Transport, Immune System, Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. V. Korotkov, E. Pardon, J. Steyaert, W. G. Hol
Crystal Structure Of The N-Terminal Domain Of The Secretin Gspd From Etec Determined With The Assistance Of A Nanobody
Structure V. 17 255 2009
PubMed-ID: 19217396 | Reference-DOI: 10.1016/J.STR.2008.11.011

Molecule 1 - GENERAL SECRETION PATHWAY PROTEIN GSPD
	Chains	:	A, C, E, G
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PPROEX HTB
	Expression System Strain	:	BL21
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	N-TERMINAL DOMAIN (UNP RESIDUES 40-277)
	Gene	:	GSPD
	Mutation	:	YES
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	316401
	Strain	:	H10407

Molecule 2 - NANOBODY NBGSPD_7
	Chains	:	B, D, F, H
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PHEN6
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	NBGSPD_7
	Organism Common	:	LLAMA
	Organism Scientific	:	LAMA GLAMA
	Organism Taxid	:	9844

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (1x)	:	A (1x)	B (1x)			E (1x)	F (1x)
Biological Unit 2 (1x)	:	A	B			E	F
Biological Unit 3 (1x)	:			C (1x)	D (1x)			G (1x)	H (1x)
Biological Unit 4 (1x)	:			C	D			G	H

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 12)

No.	Name	Count	Type	Full Name
1	CL	4	Ligand/Ion	CHLORIDE ION
2	PO4	8	Ligand/Ion	PHOSPHATE ION

Biological Unit 1 (1, 2)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	PO4	2	Ligand/Ion	PHOSPHATE ION

Biological Unit 2 (1, 4)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	PO4	4	Ligand/Ion	PHOSPHATE ION

Biological Unit 3 (1, 2)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	PO4	2	Ligand/Ion	PHOSPHATE ION

Biological Unit 4 (1, 4)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	PO4	4	Ligand/Ion	PHOSPHATE ION

Asymmetric Unit (10, 10)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ALA A:129 , ARG A:148 , SER A:150 , VAL A:151 , ARG A:154 , GLN F:115	BINDING SITE FOR RESIDUE PO4 A 238
02	AC2	SOFTWARE	ALA C:129 , ARG C:148 , SER C:150 , VAL C:151 , ARG C:154 , GLN H:115	BINDING SITE FOR RESIDUE PO4 C 238
03	AC3	SOFTWARE	GLN B:115 , ALA E:129 , ARG E:148 , SER E:150 , VAL E:151 , ARG E:154	BINDING SITE FOR RESIDUE PO4 E 238
04	AC4	SOFTWARE	GLN D:115 , HOH D:156 , ALA G:129 , ARG G:148 , SER G:150 , VAL G:151 , ARG G:154	BINDING SITE FOR RESIDUE PO4 G 238
05	AC5	SOFTWARE	ASP B:61 , LYS B:64 , ARG F:71	BINDING SITE FOR RESIDUE PO4 B 127
06	AC6	SOFTWARE	ASP D:61 , LYS D:64 , HOH D:131 , HOH D:171 , HOH D:174 , ARG H:71	BINDING SITE FOR RESIDUE PO4 D 127
07	AC7	SOFTWARE	ARG D:71	BINDING SITE FOR RESIDUE CL D 128
08	AC8	SOFTWARE	ARG B:71 , ASP F:61 , LYS F:64	BINDING SITE FOR RESIDUE PO4 F 127
09	AC9	SOFTWARE	THR F:52 , ARG F:71	BINDING SITE FOR RESIDUE CL F 128
10	BC1	SOFTWARE	ARG D:71 , HOH D:142 , ASP H:61 , LYS H:64 , HOH H:136	BINDING SITE FOR RESIDUE PO4 H 127

Asymmetric Unit

No.	Residues
1	B:22	-	B:95
2	D:22	-	D:95
3	F:22	-	F:95
4	H:22	-	H:95

(no "Cis Peptide Bond" information available for 3EZJ)

(no "SAP(SNP)/Variant" information available for 3EZJ)

(no "PROSITE Motif" information available for 3EZJ)

(no "Exon" information available for 3EZJ)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:198
 aligned with Q707C1_ECOLX | Q707C1 from UniProtKB/TrEMBL  Length:616

    Alignment length:230
                                              1  4       5                                                                                                                                                                                                        
                                     -        |2 |       5        15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205
         Q707C1_ECOLX     - ------------------MGPG-------VQGKVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKSSAAKVEPLPLVGEGSDNYAGDEMVTKVVPVRNVSVRELAPILRQMIDSAGSGNVVNYDPSNVIMLTGRASVVERLTEVIQRVDHAGNRTEEVIPLDNASASEIARVLESLTKNSGENQPATLKSQIVADERTNSVIVSGDPATRDKMRRLIRRLD 205
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeehhhhhhhhhhhhh.eee....eeeeee....hhhhhhhhhhhhhhhh.eeeeee...eeeeee.-------------------...eeeeeee....hhhhhhhhhhhhhhhhh...eeeee...eeeeeeehhhhhhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhh..-------------.eeee....eeeeeehhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ezj A   3 ATFTANFKDTDLKSFIETVGANLNKTIIMVQGAVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKS-------------------GDEMVTKVVPVRNVSVRELAPILRQMIDSAGSGNVVNYDPSNVIMLTGRASVVERLTEVIQRVDHAGNRTEEVIPLDNASASEIARVLESLT-------------QIVADERTNSVIVSGDPATRDKMRRLIRRLD 235
                                    12        22        35        45        55        65        75    |    -         -    |  105       115       125       135       145       155       165       175       185     |   -       205       215       225       235
                                                       31|                                           80                 100                                                                                        191           205                              
                                                        35

Chain B from PDB  Type:PROTEIN  Length:120
                                                                                                                                                        
               SCOP domains d3ezjb_ B: automated matches                                                                                             SCOP domains
               CATH domains 3ezjB00 B:1-120 Immunoglobulins                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee..eeee....eeeeeeeee....eeeeeeeee......eeeeeee....eee.......eeeeee....eeeeee...hhhhheeeeeeeeee.....eeeee...eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 3ezj B   1 QVQLQESGGGLVQAGGSLRLSCAASGSIFSINSMDWDRQAPGKQRELVATITSGGSTNYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNANVKTWAGMTRDYWGQGTQVTVSS 120
                                    10        20        30        40        50        60        70        80        90       100       110       120

Chain C from PDB  Type:PROTEIN  Length:197
 aligned with Q707C1_ECOLX | Q707C1 from UniProtKB/TrEMBL  Length:616

    Alignment length:230
                                              1  4       5                                                                                                                                                                                                        
                                     -        |2 |       5        15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205
         Q707C1_ECOLX     - ------------------MGPG-------VQGKVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKSSAAKVEPLPLVGEGSDNYAGDEMVTKVVPVRNVSVRELAPILRQMIDSAGSGNVVNYDPSNVIMLTGRASVVERLTEVIQRVDHAGNRTEEVIPLDNASASEIARVLESLTKNSGENQPATLKSQIVADERTNSVIVSGDPATRDKMRRLIRRLD 205
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeehhhhhhhhhhhhh.eee....eeeeee....hhhhhhhhhhhhhhhh..eeeee...eeeee--------------------....eeeeeee....hhhhhhhhhhhhhhhhh...eeee....eeeeeeehhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhh.-------------.eeee....eeeee.hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ezj C   3 ATFTANFKDTDLKSFIETVGANLNKTIIMVQGAVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVV--------------------AGDEMVTKVVPVRNVSVRELAPILRQMIDSAGSGNVVNYDPSNVIMLTGRASVVERLTEVIQRVDHAGNRTEEVIPLDNASASEIARVLESLT-------------QIVADERTNSVIVSGDPATRDKMRRLIRRLD 235
                                    12        22        35        45        55        65        75  |      -         -   |   105       115       125       135       145       155       165       175       185     |   -       205       215       225       235
                                                       31|                                         78                   99                                                                                         191           205                              
                                                        35

Chain D from PDB  Type:PROTEIN  Length:120
                                                                                                                                                        
               SCOP domains d3ezjd_ D: automated matches                                                                                             SCOP domains
               CATH domains 3ezjD00 D:1-120 Immunoglobulins                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee...eee....eeeeeeeee....eeeeeeeee......eeeeeee....eee.......eeeeee....eeeeee...hhhhheeeeeeeeee.....eeeee...eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 3ezj D   1 QVQLQESGGGLVQAGGSLRLSCAASGSIFSINSMDWDRQAPGKQRELVATITSGGSTNYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNANVKTWAGMTRDYWGQGTQVTVSS 120
                                    10        20        30        40        50        60        70        80        90       100       110       120

Chain E from PDB  Type:PROTEIN  Length:197
 aligned with Q707C1_ECOLX | Q707C1 from UniProtKB/TrEMBL  Length:616

    Alignment length:230
                                             1 3        4                                                                                                                                                                                                         
                                     -       | 3        |5        15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205
         Q707C1_ECOLX     - -----------------MGP--------GVQGKVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKSSAAKVEPLPLVGEGSDNYAGDEMVTKVVPVRNVSVRELAPILRQMIDSAGSGNVVNYDPSNVIMLTGRASVVERLTEVIQRVDHAGNRTEEVIPLDNASASEIARVLESLTKNSGENQPATLKSQIVADERTNSVIVSGDPATRDKMRRLIRRLD 205
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeehhhhhhhhhhhhh.eee.....eeeeee....hhhhhhhhhhhhhhhhh.eeeee...eeeee--------------------....eeeeeee....hhhhhhhhhhhhhhh.....eeee....eeeeeeehhhhhhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhhhh-------------.eeee....eeeeeehhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ezj E   4 TFTANFKDTDLKSFIETVGANLNKTIIMGVQGAVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVV--------------------AGDEMVTKVVPVRNVSVRELAPILRQMIDSAGSGNVVNYDPSNVIMLTGRASVVERLTEVIQRVDHAGNRTEEVIPLDNASASEIARVLESLT-------------QIVADERTNSVIVSGDPATRDKMRRLIRRLD 235
                                    13        23        35        45        55        65        75  |      -         -   |   105       115       125       135       145       155       165       175       185     |   -       205       215       225       235
                                                       32|                                         78                   99                                                                                         191           205                              
                                                        35

Chain F from PDB  Type:PROTEIN  Length:120
                                                                                                                                                        
               SCOP domains d3ezjf_ F: automated matches                                                                                             SCOP domains
               CATH domains 3ezjF00 F:1-120 Immunoglobulins                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee..eeee....eeeeeeeee....eeeeeeeee......eeeeeee....eee.......eeeeee....eeeeee...hhhhheeeeeeeeee.....eeeee...eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 3ezj F   1 QVQLQESGGGLVQAGGSLRLSCAASGSIFSINSMDWDRQAPGKQRELVATITSGGSTNYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNANVKTWAGMTRDYWGQGTQVTVSS 120
                                    10        20        30        40        50        60        70        80        90       100       110       120

Chain G from PDB  Type:PROTEIN  Length:199
 aligned with Q707C1_ECOLX | Q707C1 from UniProtKB/TrEMBL  Length:616

    Alignment length:230
                                              1  4       5                                                                                                                                                                                                        
                                     -        |2 |       5        15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205
         Q707C1_ECOLX     - ------------------MGPG-------VQGKVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKSSAAKVEPLPLVGEGSDNYAGDEMVTKVVPVRNVSVRELAPILRQMIDSAGSGNVVNYDPSNVIMLTGRASVVERLTEVIQRVDHAGNRTEEVIPLDNASASEIARVLESLTKNSGENQPATLKSQIVADERTNSVIVSGDPATRDKMRRLIRRLD 205
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeehhhhhhhhhhhhh.eee....eeeeee....hhhhhhhhhhhhhhhh.eeeeee...eeeeee.------------------....eeeeeee....hhhhhhhhhhhhhhhhh...eeeee...eeeeeeehhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhh..-------------.eeee....eeeee.hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ezj G   3 ATFTANFKDTDLKSFIETVGANLNKTIIMVQGAVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKS------------------AGDEMVTKVVPVRNVSVRELAPILRQMIDSAGSGNVVNYDPSNVIMLTGRASVVERLTEVIQRVDHAGNRTEEVIPLDNASASEIARVLESLT-------------QIVADERTNSVIVSGDPATRDKMRRLIRRLD 235
                                    12        22        35        45        55        65        75    |    -         -   |   105       115       125       135       145       155       165       175       185     |   -       205       215       225       235
                                                       31|                                           80                 99                                                                                         191           205                              
                                                        35

Chain H from PDB  Type:PROTEIN  Length:120
                                                                                                                                                        
               SCOP domains d3ezjh_ H: automated matches                                                                                             SCOP domains
               CATH domains 3ezjH00 H:1-120 Immunoglobulins                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee..eeee....eeeeeeeee....eeeeeeeee......eeeeeee....eee.hhhh..eeeeee....eeeeee...hhhhheeeeeeeeee.....eeeee...eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 3ezj H   1 QVQLQESGGGLVQAGGSLRLSCAASGSIFSINSMDWDRQAPGKQRELVATITSGGSTNYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNANVKTWAGMTRDYWGQGTQVTVSS 120
                                    10        20        30        40        50        60        70        80        90       100       110       120

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Immunoglobulin-like beta-sandwich (7299)

Superfamily: Immunoglobulin (5995)

Family: V set domains (antibody variable domain-like) (1919)

Protein domain: automated matches (311)

Llama (Lama glama) [TaxId: 9844] (62)

1a	d3ezjb_	B:
1b	d3ezjd_	D:
1c	d3ezjf_	F:
1d	d3ezjh_	H:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Sandwich (5577)

Topology: Immunoglobulin-like (3897)

Homologous Superfamily: Immunoglobulins (2282)

Escherichia coli. Organism_taxid: 316401. Strain: h10407. (1)

1a	3ezjB00	B:1-120
1b	3ezjD00	D:1-120
1c	3ezjF00	F:1-120
1d	3ezjH00	H:1-120

(no "Pfam Domain" information available for 3EZJ)

Asymmetric Unit(hide GO term definitions)

Chain A,C,E,G (Q707C1_ECOLX | Q707C1)

molecular function
	GO:0008565	protein transporter activity	Enables the directed movement of proteins into, out of or within a cell, or between cells.
biological process
	GO:0009306	protein secretion	The controlled release of proteins from a cell.
	GO:0015628	protein secretion by the type II secretion system	The process in which proteins are secreted across the outer membrane of Gram-negative bacteria by the type II secretion system. Proteins using this pathway are first translocated across the cytoplasmic membrane via the Sec or Tat pathways.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0009279	cell outer membrane	A lipid bilayer that forms the outermost membrane of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures.
	GO:0019867	outer membrane	The external membrane of Gram-negative bacteria or certain organelles such as mitochondria and chloroplasts; freely permeable to most ions and metabolites.
	GO:0015627	type II protein secretion system complex	A large protein complex, containing 12-15 subunits, that spans the cell envelope of Gram-negative bacteria and mediates the movement of proteins into the extracellular environment. The complex includes a component in the cytoplasm, an inner membrane subcomplex that reaches into the periplasmic compartment and a secretion pore in the outer membrane. Proteins using the Type II pathway are transported across the cytoplasmic membrane by the Sec or Tat complex.

Asymmetric Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3ezj)

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	3ezj
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(no "Entries Sharing at Least One Protein Chain" available for 3EZJ)

(no "Related Entries Specified in the PDB File" available for 3EZJ)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 12)

Sites (10, 10)

SS Bonds (4, 4)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 4)

CATH Domains (1, 4)

Pfam Domains (0, 0)

Gene Ontology (7, 7)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File