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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF XIAP BIR3 DOMAIN IN COMPLEX WITH A SMAC-MIMETIC COMPOUND, SMAC010
Keywords ZINC-FINGER, APOPTOSIS, CYTOPLASM, LIGASE, METAL-BINDING, PHOSPHOPROTEIN, POLYMORPHISM, PROTEASE INHIBITOR, THIOL PROTEASE INHIBITOR, UBL CONJUGATION, UBL CONJUGATION PATHWAY
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3CM2     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 4  D 102 832 0
2  Protein   BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 4  A 103 838 0
3  Protein   BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 4  B 103 838 0
4  Protein   BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 4  C 102 831 0
5  Protein   BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 4  E 102 832 0
6  Protein   BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 4  F 103 838 0
7  Protein   BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 4  G 102 832 0
8  Protein   BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 4  H 102 832 0
9  Protein   BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 4  I 102 832 0
10  Protein   BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 4  J 103 839 0
11  Ligand   BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 4  D 2 0 37
12  Ligand   BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 4  A 2 0 37
13  Ligand   BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 4  B 2 0 37
14  Ligand   BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 4  C 2 0 37
15  Ligand   BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 4  E 2 0 37
16  Ligand   BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 4  F 2 0 37
17  Ligand   BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 4  G 2 0 37
18  Ligand   BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 4  H 2 0 37
19  Ligand   BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 4  I 2 0 37
20  Ligand   BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 4  J 2 0 37
21 Water     238 0 238
total       1282 8344 608
Proteins
Unit 1 THR254 ASN255 LEU256 PRO257 ARG258 ASN259 PRO260 SER261 MET262 ALA263 ASP264 TYR265 GLU266 ALA267 ARG268 ILE269 PHE270 THR271 PHE272 GLY273 THR274 TRP275 ILE276 TYR277 SER278 VAL279 ASN280 LYS281 GLU282 GLN283 LEU284 ALA285 ARG286 ALA287 GLY288 PHE289 TYR290 ALA291 LEU292 GLY293 GLU294 GLY295 ASP296 LYS297 VAL298 LYS299 CYS300 PHE301 HIS302 CYS303 GLY304 GLY305 GLY306 LEU307 THR308 ASP309 TRP310 LYS311 PRO312 SER313 GLU314 ASP315 PRO316 TRP317 GLU318 GLN319 HIS320 ALA321 LYS322 TRP323 TYR324 PRO325 GLY326 CYS327 LYS328 TYR329 LEU330 LEU331 GLU332 GLN333 LYS334 GLY335 GLN336 GLU337 TYR338 ILE339 ASN340 ASN341 ILE342 HIS343 LEU344 THR345 HIS346 SER347 LEU348 GLU349 GLU350 CYS351 LEU352 VAL353 ARG354 THR355
Unit 2 SER253 THR254 ASN255 LEU256 PRO257 ARG258 ASN259 PRO260 SER261 MET262 ALA263 ASP264 TYR265 GLU266 ALA267 ARG268 ILE269 PHE270 THR271 PHE272 GLY273 THR274 TRP275 ILE276 TYR277 SER278 VAL279 ASN280 LYS281 GLU282 GLN283 LEU284 ALA285 ARG286 ALA287 GLY288 PHE289 TYR290 ALA291 LEU292 GLY293 GLU294 GLY295 ASP296 LYS297 VAL298 LYS299 CYS300 PHE301 HIS302 CYS303 GLY304 GLY305 GLY306 LEU307 THR308 ASP309 TRP310 LYS311 PRO312 SER313 GLU314 ASP315 PRO316 TRP317 GLU318 GLN319 HIS320 ALA321 LYS322 TRP323 TYR324 PRO325 GLY326 CYS327 LYS328 TYR329 LEU330 LEU331 GLU332 GLN333 LYS334 GLY335 GLN336 GLU337 TYR338 ILE339 ASN340 ASN341 ILE342 HIS343 LEU344 THR345 HIS346 SER347 LEU348 GLU349 GLU350 CYS351 LEU352 VAL353 ARG354 THR355
Unit 3 SER253 THR254 ASN255 LEU256 PRO257 ARG258 ASN259 PRO260 SER261 MET262 ALA263 ASP264 TYR265 GLU266 ALA267 ARG268 ILE269 PHE270 THR271 PHE272 GLY273 THR274 TRP275 ILE276 TYR277 SER278 VAL279 ASN280 LYS281 GLU282 GLN283 LEU284 ALA285 ARG286 ALA287 GLY288 PHE289 TYR290 ALA291 LEU292 GLY293 GLU294 GLY295 ASP296 LYS297 VAL298 LYS299 CYS300 PHE301 HIS302 CYS303 GLY304 GLY305 GLY306 LEU307 THR308 ASP309 TRP310 LYS311 PRO312 SER313 GLU314 ASP315 PRO316 TRP317 GLU318 GLN319 HIS320 ALA321 LYS322 TRP323 TYR324 PRO325 GLY326 CYS327 LYS328 TYR329 LEU330 LEU331 GLU332 GLN333 LYS334 GLY335 GLN336 GLU337 TYR338 ILE339 ASN340 ASN341 ILE342 HIS343 LEU344 THR345 HIS346 SER347 LEU348 GLU349 GLU350 CYS351 LEU352 VAL353 ARG354 THR355
Unit 4 SER253 THR254 ASN255 LEU256 PRO257 ARG258 ASN259 PRO260 SER261 MET262 ALA263 ASP264 TYR265 GLU266 ALA267 ARG268 ILE269 PHE270 THR271 PHE272 GLY273 THR274 TRP275 ILE276 TYR277 SER278 VAL279 ASN280 LYS281 GLU282 GLN283 LEU284 ALA285 ARG286 ALA287 GLY288 PHE289 TYR290 ALA291 LEU292 GLY293 GLU294 GLY295 ASP296 LYS297 VAL298 LYS299 CYS300 PHE301 HIS302 CYS303 GLY304 GLY305 GLY306 LEU307 THR308 ASP309 TRP310 LYS311 PRO312 SER313 GLU314 ASP315 PRO316 TRP317 GLU318 GLN319 HIS320 ALA321 LYS322 TRP323 TYR324 PRO325 GLY326 CYS327 LYS328 TYR329 LEU330 LEU331 GLU332 GLN333 LYS334 GLY335 GLN336 GLU337 TYR338 ILE339 ASN340 ASN341 ILE342 HIS343 LEU344 THR345 HIS346 SER347 LEU348 GLU349 GLU350 CYS351 LEU352 VAL353 ARG354
Unit 5 THR254 ASN255 LEU256 PRO257 ARG258 ASN259 PRO260 SER261 MET262 ALA263 ASP264 TYR265 GLU266 ALA267 ARG268 ILE269 PHE270 THR271 PHE272 GLY273 THR274 TRP275 ILE276 TYR277 SER278 VAL279 ASN280 LYS281 GLU282 GLN283 LEU284 ALA285 ARG286 ALA287 GLY288 PHE289 TYR290 ALA291 LEU292 GLY293 GLU294 GLY295 ASP296 LYS297 VAL298 LYS299 CYS300 PHE301 HIS302 CYS303 GLY304 GLY305 GLY306 LEU307 THR308 ASP309 TRP310 LYS311 PRO312 SER313 GLU314 ASP315 PRO316 TRP317 GLU318 GLN319 HIS320 ALA321 LYS322 TRP323 TYR324 PRO325 GLY326 CYS327 LYS328 TYR329 LEU330 LEU331 GLU332 GLN333 LYS334 GLY335 GLN336 GLU337 TYR338 ILE339 ASN340 ASN341 ILE342 HIS343 LEU344 THR345 HIS346 SER347 LEU348 GLU349 GLU350 CYS351 LEU352 VAL353 ARG354 THR355
Unit 6 SER253 THR254 ASN255 LEU256 PRO257 ARG258 ASN259 PRO260 SER261 MET262 ALA263 ASP264 TYR265 GLU266 ALA267 ARG268 ILE269 PHE270 THR271 PHE272 GLY273 THR274 TRP275 ILE276 TYR277 SER278 VAL279 ASN280 LYS281 GLU282 GLN283 LEU284 ALA285 ARG286 ALA287 GLY288 PHE289 TYR290 ALA291 LEU292 GLY293 GLU294 GLY295 ASP296 LYS297 VAL298 LYS299 CYS300 PHE301 HIS302 CYS303 GLY304 GLY305 GLY306 LEU307 THR308 ASP309 TRP310 LYS311 PRO312 SER313 GLU314 ASP315 PRO316 TRP317 GLU318 GLN319 HIS320 ALA321 LYS322 TRP323 TYR324 PRO325 GLY326 CYS327 LYS328 TYR329 LEU330 LEU331 GLU332 GLN333 LYS334 GLY335 GLN336 GLU337 TYR338 ILE339 ASN340 ASN341 ILE342 HIS343 LEU344 THR345 HIS346 SER347 LEU348 GLU349 GLU350 CYS351 LEU352 VAL353 ARG354 THR355
Unit 7 THR254 ASN255 LEU256 PRO257 ARG258 ASN259 PRO260 SER261 MET262 ALA263 ASP264 TYR265 GLU266 ALA267 ARG268 ILE269 PHE270 THR271 PHE272 GLY273 THR274 TRP275 ILE276 TYR277 SER278 VAL279 ASN280 LYS281 GLU282 GLN283 LEU284 ALA285 ARG286 ALA287 GLY288 PHE289 TYR290 ALA291 LEU292 GLY293 GLU294 GLY295 ASP296 LYS297 VAL298 LYS299 CYS300 PHE301 HIS302 CYS303 GLY304 GLY305 GLY306 LEU307 THR308 ASP309 TRP310 LYS311 PRO312 SER313 GLU314 ASP315 PRO316 TRP317 GLU318 GLN319 HIS320 ALA321 LYS322 TRP323 TYR324 PRO325 GLY326 CYS327 LYS328 TYR329 LEU330 LEU331 GLU332 GLN333 LYS334 GLY335 GLN336 GLU337 TYR338 ILE339 ASN340 ASN341 ILE342 HIS343 LEU344 THR345 HIS346 SER347 LEU348 GLU349 GLU350 CYS351 LEU352 VAL353 ARG354 THR355
Unit 8 THR254 ASN255 LEU256 PRO257 ARG258 ASN259 PRO260 SER261 MET262 ALA263 ASP264 TYR265 GLU266 ALA267 ARG268 ILE269 PHE270 THR271 PHE272 GLY273 THR274 TRP275 ILE276 TYR277 SER278 VAL279 ASN280 LYS281 GLU282 GLN283 LEU284 ALA285 ARG286 ALA287 GLY288 PHE289 TYR290 ALA291 LEU292 GLY293 GLU294 GLY295 ASP296 LYS297 VAL298 LYS299 CYS300 PHE301 HIS302 CYS303 GLY304 GLY305 GLY306 LEU307 THR308 ASP309 TRP310 LYS311 PRO312 SER313 GLU314 ASP315 PRO316 TRP317 GLU318 GLN319 HIS320 ALA321 LYS322 TRP323 TYR324 PRO325 GLY326 CYS327 LYS328 TYR329 LEU330 LEU331 GLU332 GLN333 LYS334 GLY335 GLN336 GLU337 TYR338 ILE339 ASN340 ASN341 ILE342 HIS343 LEU344 THR345 HIS346 SER347 LEU348 GLU349 GLU350 CYS351 LEU352 VAL353 ARG354 THR355
Unit 9 THR254 ASN255 LEU256 PRO257 ARG258 ASN259 PRO260 SER261 MET262 ALA263 ASP264 TYR265 GLU266 ALA267 ARG268 ILE269 PHE270 THR271 PHE272 GLY273 THR274 TRP275 ILE276 TYR277 SER278 VAL279 ASN280 LYS281 GLU282 GLN283 LEU284 ALA285 ARG286 ALA287 GLY288 PHE289 TYR290 ALA291 LEU292 GLY293 GLU294 GLY295 ASP296 LYS297 VAL298 LYS299 CYS300 PHE301 HIS302 CYS303 GLY304 GLY305 GLY306 LEU307 THR308 ASP309 TRP310 LYS311 PRO312 SER313 GLU314 ASP315 PRO316 TRP317 GLU318 GLN319 HIS320 ALA321 LYS322 TRP323 TYR324 PRO325 GLY326 CYS327 LYS328 TYR329 LEU330 LEU331 GLU332 GLN333 LYS334 GLY335 GLN336 GLU337 TYR338 ILE339 ASN340 ASN341 ILE342 HIS343 LEU344 THR345 HIS346 SER347 LEU348 GLU349 GLU350 CYS351 LEU352 VAL353 ARG354 THR355
Unit 10 THR254 ASN255 LEU256 PRO257 ARG258 ASN259 PRO260 SER261 MET262 ALA263 ASP264 TYR265 GLU266 ALA267 ARG268 ILE269 PHE270 THR271 PHE272 GLY273 THR274 TRP275 ILE276 TYR277 SER278 VAL279 ASN280 LYS281 GLU282 GLN283 LEU284 ALA285 ARG286 ALA287 GLY288 PHE289 TYR290 ALA291 LEU292 GLY293 GLU294 GLY295 ASP296 LYS297 VAL298 LYS299 CYS300 PHE301 HIS302 CYS303 GLY304 GLY305 GLY306 LEU307 THR308 ASP309 TRP310 LYS311 PRO312 SER313 GLU314 ASP315 PRO316 TRP317 GLU318 GLN319 HIS320 ALA321 LYS322 TRP323 TYR324 PRO325 GLY326 CYS327 LYS328 TYR329 LEU330 LEU331 GLU332 GLN333 LYS334 GLY335 GLN336 GLU337 TYR338 ILE339 ASN340 ASN341 ILE342 HIS343 LEU344 THR345 HIS346 SER347 LEU348 GLU349 GLU350 CYS351 LEU352 VAL353 ARG354 THR355 THR356
Ligands
Unit 11 ZN502 X23600
Unit 12 ZN502 X23600
Unit 13 ZN502 X23600
Unit 14 ZN502 X23600
Unit 15 ZN502 X23600
Unit 16 ZN502 X23600
Unit 17 ZN502 X23600
Unit 18 ZN502 X23600
Unit 19 ZN502 X23600
Unit 20 ZN502 X23600
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany