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Title | CRYSTAL STRUCTURE OF PYROCOCCUS HORIKOSHII ARGINYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(ARG) | |
Keywords | RRS/TRNA(ARG), AMINOACYL-TRNA SYNTHETASE, ATP-BINDING, CYTOPLASM, LIGASE, NUCLEOTIDE-BINDING, PROTEIN BIOSYNTHESIS, LIGASE/RNA COMPLEX | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 2ZUF | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | ARGINYL-TRNA SYNTHETASE | A | 628 | 5097 | 0 |
2 | RNA | B | 76 | 1626 | 0 | |
3 | Water | 248 | 0 | 248 | ||
total | 952 | 6723 | 248 |
Unit 1 | LEU2 MET3 GLU4 ILE5 ARG6 GLU7 SER8 VAL9 LYS10 GLU11 ARG12 ILE13 GLU14 GLU15 ILE16 ILE17 LYS18 GLU19 ILE20 ALA21 PRO22 GLN23 TRP24 GLU25 GLY26 GLU27 ILE28 GLU29 LEU30 LYS31 GLU32 THR33 PRO34 ASP35 PRO36 LYS37 LEU38 GLY39 ASP40 PHE41 GLY42 THR43 PRO44 ILE45 ALA46 PHE47 LYS48 LEU49 ALA50 LYS51 LEU52 LEU53 LYS54 ARG55 PRO56 PRO57 ILE58 GLU59 ILE60 ALA61 GLU62 LYS63 ILE64 VAL65 GLU66 LYS67 LEU68 LYS69 LEU70 ASN71 LEU72 PRO73 GLU74 GLY75 ILE76 LYS77 ASP78 VAL79 LYS80 ALA81 VAL82 ASN83 GLY84 TYR85 ILE86 ASN87 VAL88 PHE89 ILE90 ASP91 TYR92 PRO93 HIS94 PHE95 ALA96 ARG97 ILE98 LEU99 ILE100 ASN101 ASP102 ILE103 LEU104 ALA105 LYS106 GLY107 ASP108 ARG109 PHE110 GLY111 SER112 SER113 GLU114 ILE115 GLY116 LYS117 GLY118 LYS119 LYS120 VAL121 ILE122 VAL123 GLU124 HIS125 THR126 SER127 VAL128 ASN129 PRO130 THR131 LYS132 PRO133 LEU134 HIS135 MET136 GLY137 HIS138 ALA139 ARG140 ASN141 ALA142 ILE143 LEU144 GLY145 ASP146 VAL147 MET148 ALA149 ARG150 ILE151 LEU152 ARG153 PHE154 LEU155 GLY156 TYR157 GLU158 VAL159 GLU160 VAL161 GLN162 ASN163 TYR164 ILE165 ASP166 ASP167 LEU168 GLY169 ILE170 GLN171 PHE172 ALA173 GLN174 VAL175 TYR176 TRP177 GLY178 TYR179 LEU180 ARG181 LEU182 LYS183 GLU184 GLU185 PHE186 GLU187 ARG188 ILE189 MET190 ASN191 GLU192 LEU193 ARG194 GLU195 ARG196 GLY197 LEU198 LYS199 ASP200 ASN201 PRO202 ILE203 ASP204 HIS205 ALA206 LEU207 GLY208 LEU209 LEU210 TYR211 VAL212 GLU213 VAL214 ASN215 ARG216 ARG217 LEU218 GLU219 ASP220 ASN221 PRO222 GLU223 LEU224 GLU225 ASN226 GLU227 ILE228 ARG229 ASP230 ILE231 MET232 LYS233 LYS234 LEU235 GLU236 SER237 GLY238 GLU239 LEU240 TYR241 GLY242 ARG243 LYS244 LEU245 ALA246 GLU247 GLU248 VAL249 VAL250 ARG251 ALA252 GLN253 MET254 VAL255 THR256 THR257 TYR258 LYS259 LEU260 GLY261 VAL262 LYS263 TYR264 ASP265 LEU266 LEU267 VAL268 TRP269 GLU270 SER271 ASP272 ILE273 VAL274 ARG275 ARG276 LYS277 LEU278 PHE279 GLU280 ILE281 ALA282 LEU283 GLU284 LEU285 LEU286 SER287 LYS288 ASN289 GLU290 ASN291 PHE292 TYR293 ILE294 PRO295 SER296 ASP297 GLY298 LYS299 TYR300 ARG301 GLY302 ALA303 PHE304 VAL305 MET306 ASP307 LEU308 ARG309 LYS310 LEU311 PHE312 PRO313 ASP314 MET315 LYS316 ASN317 PRO318 ILE319 LEU320 VAL321 LEU322 ARG323 ARG324 SER325 ASP326 GLY327 THR328 ALA329 THR330 TYR331 THR332 GLY333 LYS334 ASP335 ILE336 ALA337 TYR338 HIS339 LEU340 TRP341 LYS342 PHE343 GLY344 LYS345 ILE346 ASP347 VAL348 ASP349 LEU350 LEU351 TYR352 LYS353 GLU354 TRP355 ASP356 SER357 THR358 THR359 TRP360 THR361 THR362 ALA363 PRO364 ASP365 GLY366 LYS367 SER368 MET369 PRO370 ASN371 LYS372 PHE373 GLY374 ASN375 ALA376 ASN377 ILE378 VAL379 ILE380 ASN381 VAL382 ILE383 GLY384 ALA385 GLU386 GLN387 LYS388 HIS389 PRO390 GLN391 LEU392 ALA393 ILE394 LYS395 TYR396 ALA397 LEU398 GLN399 LEU400 LEU401 GLY402 PHE403 GLU404 ASP405 ALA406 ALA407 ALA408 ASN409 LEU410 TYR411 HIS412 LEU413 ALA414 TYR415 GLU416 HIS417 VAL418 GLU419 ARG420 PRO421 GLU422 GLY423 LYS424 PHE425 SER426 GLY427 ARG428 LYS429 GLY430 THR431 TRP432 VAL433 GLY434 PHE435 THR436 VAL437 ASP438 GLU439 VAL440 ILE441 GLN442 GLU443 ALA444 VAL445 LYS446 ARG447 ALA448 ARG449 GLU450 LEU451 ILE452 GLU453 GLU454 LYS455 ASN456 PRO457 ALA458 LEU459 SER460 ASP461 GLU462 GLU463 LYS464 ALA465 GLU466 VAL467 ALA468 GLU469 LYS470 VAL471 GLY472 ILE473 GLY474 ALA475 ILE476 ARG477 TYR478 ASN479 LEU480 ILE481 LYS482 TYR483 SER484 PRO485 ASP486 LYS487 LYS488 ILE489 ILE490 PHE491 ARG492 TRP493 GLU494 ASP495 VAL496 LEU497 ASN498 PHE499 GLU500 GLY501 GLU502 SER503 ALA504 PRO505 TYR506 ILE507 GLN508 TYR509 ALA510 HIS511 ALA512 ARG513 CYS514 SER515 SER516 ILE517 LEU518 ARG519 LYS520 ALA521 GLU522 GLU523 GLU524 GLY525 ILE526 LYS527 VAL528 ASP529 PRO530 GLU531 THR532 LEU533 PHE534 LYS535 ASN536 ALA537 ASP538 PHE539 THR540 LYS541 LEU542 SER543 GLU544 ARG545 GLU546 ARG547 GLU548 LEU549 VAL550 ILE551 MET552 LEU553 SER554 LYS555 PHE556 PRO557 ARG558 ILE559 VAL560 GLU561 GLN562 ALA563 GLY564 LYS565 ASP566 VAL567 LYS568 PRO569 HIS570 LEU571 ILE572 ALA573 TRP574 PHE575 ALA576 ASN577 GLU578 LEU579 ALA580 SER581 LEU582 PHE583 ASN584 LYS585 PHE586 TYR587 MET588 ASP589 HIS590 PRO591 VAL592 LEU593 LYS594 ALA595 GLU596 GLU597 GLY598 VAL599 ARG600 GLU601 ALA602 ARG603 LEU604 LEU605 LEU606 VAL607 MET608 ALA609 VAL610 GLU611 GLN612 VAL613 LEU614 LYS615 ASN616 ALA617 LEU618 TYR619 LEU620 MET621 GLY622 ILE623 GLU624 ALA625 PRO626 GLU627 ARG628 MET629 |
Unit 2 | G901 G902 A903 C904 C905 G906 G907 U908 A909 G910 C911 C912 U913 A914 G915 C916 C917 A917A G918 G919 A920 C920A A921 G922 G923 G924 C925 G926 G927 C928 G929 G930 C931 C932 U933 C934 C935 U936 A937 A938 G939 C940 C941 G942 C943 A944 G945 G946 U947 C948 C949 G950 G951 G952 G953 U954 U955 C956 A957 A958 A959 U960 C961 C962 C963 C964 G965 C966 C967 G968 G969 U970 C971 C972 G973 C974 |
Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |