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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF UMP KINASE FROM UREAPLASMA PARVUM
Keywords UMPK, KINASE, TRANSFERASE, URIDYLATE KINASE, PYRIMIDINE BIOSYNTHESIS, AMINO ACID KINASE FAMILY
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2VA1     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   URIDYLATE KINASE  A 226 1743 0
2  Protein   URIDYLATE KINASE  B 235 1798 0
3  Protein   URIDYLATE KINASE  C 227 1746 0
4  Protein   URIDYLATE KINASE  D 228 1757 0
5  Protein   URIDYLATE KINASE  E 235 1812 0
6  Protein   URIDYLATE KINASE  F 226 1744 0
7  Ligand   URIDYLATE KINASE  A 1 0 5
8  Ligand   URIDYLATE KINASE  B 1 0 5
9  Ligand   URIDYLATE KINASE  C 1 0 5
10  Ligand   URIDYLATE KINASE  D 1 0 5
11  Ligand   URIDYLATE KINASE  E 1 0 5
12  Ligand   URIDYLATE KINASE  F 1 0 5
13 Water     158 0 158
total       1541 10600 188
Proteins
Unit 1 ARG2 LYS3 GLN4 ARG5 ILE6 VAL7 ILE8 LYS9 ILE10 SER11 GLY12 ALA13 CYS14 LEU15 LYS16 GLN17 ASN18 ASP19 SER20 SER21 ILE22 ILE23 ASP24 PHE25 ILE26 LYS27 ILE28 ASN29 ASP30 LEU31 ALA32 GLU33 GLN34 ILE35 GLU36 LYS37 ILE38 SER39 LYS40 LYS41 TYR42 ILE43 VAL44 SER45 ILE46 VAL47 LEU48 GLY49 GLY50 GLY51 ASN52 ILE53 TRP54 ARG55 GLY56 SER57 ILE58 ALA59 LYS60 GLU61 LEU62 ASP63 MET64 ASP65 ARG66 ASN67 LEU68 ALA69 ASP70 ASN71 MET72 GLY73 MET74 MET75 ALA76 THR77 ILE78 ILE79 ASN80 GLY81 LEU82 ALA83 LEU84 GLU85 ASN86 ALA87 LEU88 ASN89 HIS90 LEU91 ASN92 VAL93 ASN94 THR95 ILE96 VAL97 LEU98 SER99 ALA100 ILE101 LYS102 CYS103 ASP104 LYS105 LEU106 VAL107 HIS108 GLU109 SER110 SER111 ALA112 ASN113 ASN114 ILE115 LYS116 LYS117 ALA118 ILE119 GLU120 LYS121 GLU122 GLN123 VAL124 MET125 ILE126 PHE127 VAL128 ALA129 GLY130 THR131 GLY132 PHE133 PRO134 TYR135 PHE136 THR137 THR138 ASP139 SER140 CYS141 ALA142 ALA143 ILE144 ARG145 ALA146 ALA147 GLU148 THR149 GLU150 SER151 SER152 ILE153 ILE154 LEU155 MET156 GLY157 LYS158 ASN159 GLY160 VAL161 ASP162 GLY163 VAL164 TYR165 ASP166 SER167 ASP168 PHE177 TYR178 GLU179 HIS180 ILE181 THR182 PHE183 ASN184 MET185 ALA186 LEU187 THR188 GLN189 ASN190 LEU191 LYS192 VAL193 MET194 ASP195 ALA196 THR197 ALA198 LEU199 ALA200 LEU201 CYS202 GLN203 GLU204 ASN205 ASN206 ILE207 ASN208 LEU209 LEU210 VAL211 PHE212 ASN213 ILE214 ASP215 LYS216 PRO217 ASN218 ALA219 ILE220 VAL221 ASP222 VAL223 LEU224 GLU225 LYS226 LYS227 ASN228 LYS229 TYR230 THR231 ILE232 VAL233 SER234 LYS235
Unit 2 PRO-5 ARG-4 GLY-3 SER-2 HIS-1 MET0 MET1 ARG2 LYS3 GLN4 ARG5 ILE6 VAL7 ILE8 LYS9 ILE10 SER11 GLY12 ALA13 CYS14 LEU15 LYS16 GLN17 ASN18 ASP19 SER20 SER21 ILE22 ILE23 ASP24 PHE25 ILE26 LYS27 ILE28 ASN29 ASP30 LEU31 ALA32 GLU33 GLN34 ILE35 GLU36 LYS37 ILE38 SER39 LYS40 LYS41 TYR42 ILE43 VAL44 SER45 ILE46 VAL47 LEU48 GLY49 GLY50 GLY51 ASN52 ILE53 TRP54 ARG55 GLY56 SER57 ILE58 ALA59 LYS60 GLU61 LEU62 ASP63 MET64 ASP65 ARG66 ASN67 LEU68 ALA69 ASP70 ASN71 MET72 GLY73 MET74 MET75 ALA76 THR77 ILE78 ILE79 ASN80 GLY81 LEU82 ALA83 LEU84 GLU85 ASN86 ALA87 LEU88 ASN89 HIS90 LEU91 ASN92 VAL93 ASN94 THR95 ILE96 VAL97 LEU98 SER99 ALA100 ILE101 LYS102 CYS103 ASP104 LYS105 LEU106 VAL107 HIS108 GLU109 SER110 SER111 ALA112 ASN113 ASN114 ILE115 LYS116 LYS117 ALA118 ILE119 GLU120 LYS121 GLU122 GLN123 VAL124 MET125 ILE126 PHE127 VAL128 ALA129 GLY130 THR131 GLY132 PHE133 PRO134 TYR135 PHE136 THR137 THR138 ASP139 SER140 CYS141 ALA142 ALA143 ILE144 ARG145 ALA146 ALA147 GLU148 THR149 GLU150 SER151 SER152 ILE153 ILE154 LEU155 MET156 GLY157 LYS158 ASN159 GLY160 VAL161 ASP162 GLY163 VAL164 TYR165 ASP166 PRO173 ASN174 ALA175 GLN176 PHE177 TYR178 GLU179 HIS180 ILE181 THR182 PHE183 ASN184 MET185 ALA186 LEU187 THR188 GLN189 ASN190 LEU191 LYS192 VAL193 MET194 ASP195 ALA196 THR197 ALA198 LEU199 ALA200 LEU201 CYS202 GLN203 GLU204 ASN205 ASN206 ILE207 ASN208 LEU209 LEU210 VAL211 PHE212 ASN213 ILE214 ASP215 LYS216 PRO217 ASN218 ALA219 ILE220 VAL221 ASP222 VAL223 LEU224 GLU225 LYS226 LYS227 ASN228 LYS229 TYR230 THR231 ILE232 VAL233 SER234 LYS235
Unit 3 LYS3 GLN4 ARG5 ILE6 VAL7 ILE8 LYS9 ILE10 SER11 GLY12 ALA13 CYS14 LEU15 LYS16 GLN17 ASN18 ASP19 SER20 SER21 ILE22 ILE23 ASP24 PHE25 ILE26 LYS27 ILE28 ASN29 ASP30 LEU31 ALA32 GLU33 GLN34 ILE35 GLU36 LYS37 ILE38 SER39 LYS40 LYS41 TYR42 ILE43 VAL44 SER45 ILE46 VAL47 LEU48 GLY49 GLY50 GLY51 ASN52 ILE53 TRP54 ARG55 GLY56 SER57 ILE58 ALA59 LYS60 GLU61 LEU62 ASP63 MET64 ASP65 ARG66 ASN67 LEU68 ALA69 ASP70 ASN71 MET72 GLY73 MET74 MET75 ALA76 THR77 ILE78 ILE79 ASN80 GLY81 LEU82 ALA83 LEU84 GLU85 ASN86 ALA87 LEU88 ASN89 HIS90 LEU91 ASN92 VAL93 ASN94 THR95 ILE96 VAL97 LEU98 SER99 ALA100 ILE101 LYS102 CYS103 ASP104 LYS105 LEU106 VAL107 HIS108 GLU109 SER110 SER111 ALA112 ASN113 ASN114 ILE115 LYS116 LYS117 ALA118 ILE119 GLU120 LYS121 GLU122 GLN123 VAL124 MET125 ILE126 PHE127 VAL128 ALA129 GLY130 THR131 GLY132 PHE133 PRO134 TYR135 PHE136 THR137 THR138 ASP139 SER140 CYS141 ALA142 ALA143 ILE144 ARG145 ALA146 ALA147 GLU148 THR149 GLU150 SER151 SER152 ILE153 ILE154 LEU155 MET156 GLY157 LYS158 ASN159 GLY160 VAL161 ASP162 GLY163 VAL164 TYR165 ASP166 SER167 ASP168 ALA175 GLN176 PHE177 TYR178 GLU179 HIS180 ILE181 THR182 PHE183 ASN184 MET185 ALA186 LEU187 THR188 GLN189 ASN190 LEU191 LYS192 VAL193 MET194 ASP195 ALA196 THR197 ALA198 LEU199 ALA200 LEU201 CYS202 GLN203 GLU204 ASN205 ASN206 ILE207 ASN208 LEU209 LEU210 VAL211 PHE212 ASN213 ILE214 ASP215 LYS216 PRO217 ASN218 ALA219 ILE220 VAL221 ASP222 VAL223 LEU224 GLU225 LYS226 LYS227 ASN228 LYS229 TYR230 THR231 ILE232 VAL233 SER234 LYS235
Unit 4 MET1 ARG2 LYS3 GLN4 ARG5 ILE6 VAL7 ILE8 LYS9 ILE10 SER11 GLY12 ALA13 CYS14 LEU15 LYS16 GLN17 ASN18 ASP19 SER20 SER21 ILE22 ILE23 ASP24 PHE25 ILE26 LYS27 ILE28 ASN29 ASP30 LEU31 ALA32 GLU33 GLN34 ILE35 GLU36 LYS37 ILE38 SER39 LYS40 LYS41 TYR42 ILE43 VAL44 SER45 ILE46 VAL47 LEU48 GLY49 GLY50 GLY51 ASN52 ILE53 TRP54 ARG55 GLY56 SER57 ILE58 ALA59 LYS60 GLU61 LEU62 ASP63 MET64 ASP65 ARG66 ASN67 LEU68 ALA69 ASP70 ASN71 MET72 GLY73 MET74 MET75 ALA76 THR77 ILE78 ILE79 ASN80 GLY81 LEU82 ALA83 LEU84 GLU85 ASN86 ALA87 LEU88 ASN89 HIS90 LEU91 ASN92 VAL93 ASN94 THR95 ILE96 VAL97 LEU98 SER99 ALA100 ILE101 LYS102 CYS103 ASP104 LYS105 LEU106 VAL107 HIS108 GLU109 SER110 SER111 ALA112 ASN113 ASN114 ILE115 LYS116 LYS117 ALA118 ILE119 GLU120 LYS121 GLU122 GLN123 VAL124 MET125 ILE126 PHE127 VAL128 ALA129 GLY130 THR131 GLY132 PHE133 PRO134 TYR135 PHE136 THR137 THR138 ASP139 SER140 CYS141 ALA142 ALA143 ILE144 ARG145 ALA146 ALA147 GLU148 THR149 GLU150 SER151 SER152 ILE153 ILE154 LEU155 MET156 GLY157 LYS158 ASN159 GLY160 VAL161 ASP162 GLY163 VAL164 TYR165 ASP166 SER167 ALA175 GLN176 PHE177 TYR178 GLU179 HIS180 ILE181 THR182 PHE183 ASN184 MET185 ALA186 LEU187 THR188 GLN189 ASN190 LEU191 LYS192 VAL193 MET194 ASP195 ALA196 THR197 ALA198 LEU199 ALA200 LEU201 CYS202 GLN203 GLU204 ASN205 ASN206 ILE207 ASN208 LEU209 LEU210 VAL211 PHE212 ASN213 ILE214 ASP215 LYS216 PRO217 ASN218 ALA219 ILE220 VAL221 ASP222 VAL223 LEU224 GLU225 LYS226 LYS227 ASN228 LYS229 TYR230 THR231 ILE232 VAL233 SER234 LYS235
Unit 5 MET1 ARG2 LYS3 GLN4 ARG5 ILE6 VAL7 ILE8 LYS9 ILE10 SER11 GLY12 ALA13 CYS14 LEU15 LYS16 GLN17 ASN18 ASP19 SER20 SER21 ILE22 ILE23 ASP24 PHE25 ILE26 LYS27 ILE28 ASN29 ASP30 LEU31 ALA32 GLU33 GLN34 ILE35 GLU36 LYS37 ILE38 SER39 LYS40 LYS41 TYR42 ILE43 VAL44 SER45 ILE46 VAL47 LEU48 GLY49 GLY50 GLY51 ASN52 ILE53 TRP54 ARG55 GLY56 SER57 ILE58 ALA59 LYS60 GLU61 LEU62 ASP63 MET64 ASP65 ARG66 ASN67 LEU68 ALA69 ASP70 ASN71 MET72 GLY73 MET74 MET75 ALA76 THR77 ILE78 ILE79 ASN80 GLY81 LEU82 ALA83 LEU84 GLU85 ASN86 ALA87 LEU88 ASN89 HIS90 LEU91 ASN92 VAL93 ASN94 THR95 ILE96 VAL97 LEU98 SER99 ALA100 ILE101 LYS102 CYS103 ASP104 LYS105 LEU106 VAL107 HIS108 GLU109 SER110 SER111 ALA112 ASN113 ASN114 ILE115 LYS116 LYS117 ALA118 ILE119 GLU120 LYS121 GLU122 GLN123 VAL124 MET125 ILE126 PHE127 VAL128 ALA129 GLY130 THR131 GLY132 PHE133 PRO134 TYR135 PHE136 THR137 THR138 ASP139 SER140 CYS141 ALA142 ALA143 ILE144 ARG145 ALA146 ALA147 GLU148 THR149 GLU150 SER151 SER152 ILE153 ILE154 LEU155 MET156 GLY157 LYS158 ASN159 GLY160 VAL161 ASP162 GLY163 VAL164 TYR165 ASP166 SER167 ASP168 PRO169 LYS170 ILE171 ASN172 PRO173 ASN174 ALA175 GLN176 PHE177 TYR178 GLU179 HIS180 ILE181 THR182 PHE183 ASN184 MET185 ALA186 LEU187 THR188 GLN189 ASN190 LEU191 LYS192 VAL193 MET194 ASP195 ALA196 THR197 ALA198 LEU199 ALA200 LEU201 CYS202 GLN203 GLU204 ASN205 ASN206 ILE207 ASN208 LEU209 LEU210 VAL211 PHE212 ASN213 ILE214 ASP215 LYS216 PRO217 ASN218 ALA219 ILE220 VAL221 ASP222 VAL223 LEU224 GLU225 LYS226 LYS227 ASN228 LYS229 TYR230 THR231 ILE232 VAL233 SER234 LYS235
Unit 6 ARG2 LYS3 GLN4 ARG5 ILE6 VAL7 ILE8 LYS9 ILE10 SER11 GLY12 ALA13 CYS14 LEU15 LYS16 GLN17 ASN18 ASP19 SER20 SER21 ILE22 ILE23 ASP24 PHE25 ILE26 LYS27 ILE28 ASN29 ASP30 LEU31 ALA32 GLU33 GLN34 ILE35 GLU36 LYS37 ILE38 SER39 LYS40 LYS41 TYR42 ILE43 VAL44 SER45 ILE46 VAL47 LEU48 GLY49 GLY50 GLY51 ASN52 ILE53 TRP54 ARG55 GLY56 SER57 ILE58 ALA59 LYS60 GLU61 LEU62 ASP63 MET64 ASP65 ARG66 ASN67 LEU68 ALA69 ASP70 ASN71 MET72 GLY73 MET74 MET75 ALA76 THR77 ILE78 ILE79 ASN80 GLY81 LEU82 ALA83 LEU84 GLU85 ASN86 ALA87 LEU88 ASN89 HIS90 LEU91 ASN92 VAL93 ASN94 THR95 ILE96 VAL97 LEU98 SER99 ALA100 ILE101 LYS102 CYS103 ASP104 LYS105 LEU106 VAL107 HIS108 GLU109 SER110 SER111 ALA112 ASN113 ASN114 ILE115 LYS116 LYS117 ALA118 ILE119 GLU120 LYS121 GLU122 GLN123 VAL124 MET125 ILE126 PHE127 VAL128 ALA129 GLY130 THR131 GLY132 PHE133 PRO134 TYR135 PHE136 THR137 THR138 ASP139 SER140 CYS141 ALA142 ALA143 ILE144 ARG145 ALA146 ALA147 GLU148 THR149 GLU150 SER151 SER152 ILE153 ILE154 LEU155 MET156 GLY157 LYS158 ASN159 GLY160 VAL161 ASP162 GLY163 VAL164 TYR165 ASP166 SER167 GLN176 PHE177 TYR178 GLU179 HIS180 ILE181 THR182 PHE183 ASN184 MET185 ALA186 LEU187 THR188 GLN189 ASN190 LEU191 LYS192 VAL193 MET194 ASP195 ALA196 THR197 ALA198 LEU199 ALA200 LEU201 CYS202 GLN203 GLU204 ASN205 ASN206 ILE207 ASN208 LEU209 LEU210 VAL211 PHE212 ASN213 ILE214 ASP215 LYS216 PRO217 ASN218 ALA219 ILE220 VAL221 ASP222 VAL223 LEU224 GLU225 LYS226 LYS227 ASN228 LYS229 TYR230 THR231 ILE232 VAL233 SER234 LYS235
Ligands
Unit 7 PO41236
Unit 8 PO41236
Unit 9 PO41236
Unit 10 PO41236
Unit 11 PO41236
Unit 12 PO41236
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany