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Sequence, Chains, Asymmetric and Biological Units

Title COORDINATES OF THE THERMUS THERMOPHILUS 30S COMPONENTS NEIGH RBFA AS OBTAINED BY FITTING INTO THE CRYO-EM MAP OF A 30S-R COMPLEX
Keywords 30S RIBOSOME MATURATION PROTEIN RBFA, COLD SHOCK RESPONSE PR RBFA, 30S-RBFA COMPLEX, RBFA BINDING SITE ON THE 30S, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA-BIN TRNA-BINDING, ANTIBIOTIC RESISTANCE, RIBOSOMAL PROTEIN-RNA
Experiment ELECTRON MICROSCOPY
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2R1G     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  DNA    A 24 24 0
2  DNA    B 48 48 0
3  DNA    C 29 29 0
4  DNA    D 28 28 0
5  DNA    E 11 11 0
6  DNA    X 11 11 0
7  DNA    F 29 29 0
8  Protein   30S RIBOSOMAL PROTEIN S9  G 127 127 0
9  Protein   30S RIBOSOMAL PROTEIN S12  H 124 124 0
10  Protein   30S RIBOSOMAL PROTEIN S13  I 125 125 0
total       556 556 0

Proteins
Unit 8 GLU2 GLN3 TYR4 TYR5 GLY6 THR7 GLY8 ARG9 ARG10 LYS11 GLU12 ALA13 VAL14 ALA15 ARG16 VAL17 PHE18 LEU19 ARG20 PRO21 GLY22 ASN23 GLY24 LYS25 VAL26 THR27 VAL28 ASN29 GLY30 GLN31 ASP32 PHE33 ASN34 GLU35 TYR36 PHE37 GLN38 GLY39 LEU40 VAL41 ARG42 ALA43 VAL44 ALA45 ALA46 LEU47 GLU48 PRO49 LEU50 ARG51 ALA52 VAL53 ASP54 ALA55 LEU56 GLY57 ARG58 PHE59 ASP60 ALA61 TYR62 ILE63 THR64 VAL65 ARG66 GLY67 GLY68 GLY69 LYS70 SER71 GLY72 GLN73 ILE74 ASP75 ALA76 ILE77 LYS78 LEU79 GLY80 ILE81 ALA82 ARG83 ALA84 LEU85 VAL86 GLN87 TYR88 ASN89 PRO90 ASP91 TYR92 ARG93 ALA94 LYS95 LEU96 LYS97 PRO98 LEU99 GLY100 PHE101 LEU102 THR103 ARG104 ASP105 ALA106 ARG107 VAL108 VAL109 GLU110 ARG111 LYS112 LYS113 TYR114 GLY115 LYS116 HIS117 LYS118 ALA119 ARG120 ARG121 ALA122 PRO123 GLN124 TYR125 SER126 LYS127 ARG128
Unit 9 PRO5 THR6 ILE7 ASN8 GLN9 LEU10 VAL11 ARG12 LYS13 GLY14 ARG15 GLU16 LYS17 VAL18 ARG19 LYS20 LYS21 SER22 LYS23 VAL24 PRO25 ALA26 LEU27 LYS28 GLY29 ALA30 PRO31 PHE32 ARG33 ARG34 GLY35 VAL36 CYS37 THR38 VAL39 VAL40 ARG41 THR42 VAL43 THR44 PRO45 LYS46 LYS47 PRO48 ASN49 SER50 ALA51 LEU52 ARG53 LYS54 VAL55 ALA56 LYS57 VAL58 ARG59 LEU60 THR61 SER62 GLY63 TYR64 GLU65 VAL66 THR67 ALA68 TYR69 ILE70 PRO71 GLY72 GLU73 GLY74 HIS75 ASN76 LEU77 GLN78 GLU79 HIS80 SER81 VAL82 VAL83 LEU84 ILE85 ARG86 GLY87 GLY88 ARG89 VAL90 LYS91 ASP92 LEU93 PRO94 GLY95 VAL96 ARG97 TYR98 HIS99 ILE100 VAL101 ARG102 GLY103 VAL104 TYR105 ASP106 ALA107 ALA108 GLY109 VAL110 LYS111 ASP112 ARG113 LYS114 LYS115 SER116 ARG117 SER118 LYS119 TYR120 GLY121 THR122 LYS123 LYS124 PRO125 LYS126 GLU127 ALA128
Unit 10 ALA2 ARG3 ILE4 ALA5 GLY6 VAL7 GLU8 ILE9 PRO10 ARG11 ASN12 LYS13 ARG14 VAL15 ASP16 VAL17 ALA18 LEU19 THR20 TYR21 ILE22 TYR23 GLY24 ILE25 GLY26 LYS27 ALA28 ARG29 ALA30 LYS31 GLU32 ALA33 LEU34 GLU35 LYS36 THR37 GLY38 ILE39 ASN40 PRO41 ALA42 THR43 ARG44 VAL45 LYS46 ASP47 LEU48 THR49 GLU50 ALA51 GLU52 VAL53 VAL54 ARG55 LEU56 ARG57 GLU58 TYR59 VAL60 GLU61 ASN62 THR63 TRP64 LYS65 LEU66 GLU67 GLY68 GLU69 LEU70 ARG71 ALA72 GLU73 VAL74 ALA75 ALA76 ASN77 ILE78 LYS79 ARG80 LEU81 MET82 ASP83 ILE84 GLY85 CYS86 TYR87 ARG88 GLY89 LEU90 ARG91 HIS92 ARG93 ARG94 GLY95 LEU96 PRO97 VAL98 ARG99 GLY100 GLN101 ARG102 THR103 ARG104 THR105 ASN106 ALA107 ARG108 THR109 ARG110 LYS111 GLY112 PRO113 ARG114 LYS115 THR116 VAL117 ALA118 GLY119 LYS120 LYS121 LYS122 ALA123 PRO124 ARG125 LYS126

Nucleic acids
Unit 1 G6 G7 A8 G9 A10 G11 U12 U13 U14 G15 A16 U17 C18 C19 U20 G21 G22 C23 U24 C25 A26 G27 G28 G29
Unit 2 G500 C501 G502 C503 C504 G505 G506 C507 C508 A509 A510 C511 U512 C513 C514 G515 U516 G517 C518 C519 A520 G521 C522 A523 G524 C525 C526 G527 C528 G529 G530 U531 A532 A533 U534 A535 C536 G537 G538 A539 G540 G541 G542 C543 G544 C545 G546 A547
Unit 3 G885 G886 G887 G888 A889 G890 U891 A892 C893 G894 G895 C896 C897 G898 C899 A900 A901 G902 G903 C904 U905 G906 A907 A908 A909 C910 U911 C912 A913
Unit 4 A918 A919 U920 U921 G922 A923 C924 G925 G926 G927 G928 G929 C930 C931 G932 C933 C934 U935 U936 G937 U938 A939 C940 A941 C942 A943 C944 C945
Unit 5 C1400 G1401 C1402 C1403 C1404 G1405 U1406 C1407 A1408 C1409 G1410
Unit 6 C1490 G1491 A1492 A1493 G1494 U1495 C1496 G1497 U1498 A1499 A1500
Unit 7 C1501 A1502 A1503 G1504 G1505 U1506 A1507 G1508 C1509 U1510 G1511 U1512 A1513 C1514 C1515 G1516 G1517 A1518 A1519 G1520 G1521 U1522 G1523 C1524 G1525 G1526 C1527 U1528 G1529

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany