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Sequence, Chains, Asymmetric and Biological Units

Title X-RAY CRYSTAL STRUCTURE OF S. VENEZUELAE DESV IN COMPLEX WITH KETIMINE INTERMEDIATE
Keywords PLP-DEPENDENT ENZYME, DESOSAMINE, TRANSAMINASE, DEOXYSUGARS, ANTIBIOTICS, HYDROLASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2OGA     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   TRANSAMINASE  A 371 2847 0
2  Protein   TRANSAMINASE  B 370 2839 0
3  Protein   TRANSAMINASE  C 369 2832 0
4  Protein   TRANSAMINASE  D 370 2839 0
5  Ligand   TRANSAMINASE  A 5 0 35
6  Ligand   TRANSAMINASE  B 4 0 34
7  Ligand   TRANSAMINASE  C 4 0 31
8  Ligand   TRANSAMINASE  D 2 0 26
9 Water     1010 0 1010
total       2505 11357 1136
Proteins
Unit 1 THR7 PRO8 ARG9 VAL10 PRO11 PHE12 LEU13 ASP14 LEU15 LYS16 ALA17 ALA18 TYR19 GLU20 GLU21 LEU22 ARG23 ALA24 GLU25 THR26 ASP27 ALA28 ALA29 ILE30 ALA31 ARG32 VAL33 LEU34 ASP35 SER36 GLY37 ARG38 TYR39 LEU40 LEU41 GLY42 PRO43 GLU44 LEU45 GLU46 GLY47 PHE48 GLU49 ALA50 GLU51 PHE52 ALA53 ALA54 TYR55 CYS56 GLU57 THR58 ASP59 HIS60 ALA61 VAL62 GLY63 VAL64 ASN65 SER66 GLY67 MET68 ASP69 ALA70 LEU71 GLN72 LEU73 ALA74 LEU75 ARG76 GLY77 LEU78 GLY79 ILE80 GLY81 PRO82 GLY83 ASP84 GLU85 VAL86 ILE87 VAL88 PRO89 SER90 HIS91 THR92 TYR93 ILE94 ALA95 SER96 TRP97 LEU98 ALA99 VAL100 SER101 ALA102 THR103 GLY104 ALA105 THR106 PRO107 VAL108 PRO109 VAL110 GLU111 PRO112 HIS113 GLU114 ASP115 HIS116 PRO117 THR118 LEU119 ASP120 PRO121 LEU122 LEU123 VAL124 GLU125 LYS126 ALA127 ILE128 THR129 PRO130 ARG131 THR132 ARG133 ALA134 LEU135 LEU136 PRO137 VAL138 HIS139 LEU140 TYR141 GLY142 HIS143 PRO144 ALA145 ASP146 MET147 ASP148 ALA149 LEU150 ARG151 GLU152 LEU153 ALA154 ASP155 ARG156 HIS157 GLY158 LEU159 HIS160 ILE161 VAL162 GLU163 ASP164 ALA165 ALA166 GLN167 ALA168 HIS169 GLY170 ALA171 ARG172 TYR173 ARG174 GLY175 ARG176 ARG177 ILE178 GLY179 ALA180 GLY181 SER182 SER183 VAL184 ALA185 ALA186 PHE187 SER188 PHE189 TYR190 PRO191 GLY192 LYS193 ASN194 LEU195 GLY196 CYS197 PHE198 GLY199 ASP200 GLY201 GLY202 ALA203 VAL204 VAL205 THR206 GLY207 ASP208 PRO209 GLU210 LEU211 ALA212 GLU213 ARG214 LEU215 ARG216 MET217 LEU218 ARG219 ASN220 TYR221 GLY222 SER223 ARG224 GLN225 LYS226 TYR227 SER228 HIS229 GLU230 THR231 LYS232 GLY233 THR234 ASN235 SER236 ARG237 LEU238 ASP239 GLU240 MET241 GLN242 ALA243 ALA244 VAL245 LEU246 ARG247 ILE248 ARG249 LEU250 ALA251 HIS252 LEU253 ASP254 SER255 TRP256 ASN257 GLY258 ARG259 ARG260 SER261 ALA262 LEU263 ALA264 ALA265 GLU266 TYR267 LEU268 SER269 GLY270 LEU271 ALA272 GLY273 LEU274 PRO275 GLY276 ILE277 GLY278 LEU279 PRO280 VAL281 THR282 ALA283 PRO284 ASP285 THR286 ASP287 PRO288 VAL289 TRP290 HIS291 LEU292 PHE293 THR294 VAL295 ARG296 THR297 GLU298 ARG299 ARG300 ASP301 GLU302 LEU303 ARG304 SER305 HIS306 LEU307 ASP308 ALA309 ARG310 GLY311 ILE312 ASP313 THR314 LEU315 THR316 HIS317 TYR318 PRO319 VAL320 PRO321 VAL322 HIS323 LEU324 SER325 PRO326 ALA327 TYR328 ALA329 GLY330 GLU331 ALA332 PRO333 PRO334 GLU335 GLY336 SER337 LEU338 PRO339 ARG340 ALA341 GLU342 SER343 PHE344 ALA345 ARG346 GLN347 VAL348 LEU349 SER350 LEU351 PRO352 ILE353 GLY354 PRO355 HIS356 LEU357 GLU358 ARG359 PRO360 GLN361 ALA362 LEU363 ARG364 VAL365 ILE366 ASP367 ALA368 VAL369 ARG370 GLU371 TRP372 ALA373 GLU374 ARG375 VAL376 ASP377
Unit 2 THR7 PRO8 ARG9 VAL10 PRO11 PHE12 LEU13 ASP14 LEU15 LYS16 ALA17 ALA18 TYR19 GLU20 GLU21 LEU22 ARG23 ALA24 GLU25 THR26 ASP27 ALA28 ALA29 ILE30 ALA31 ARG32 VAL33 LEU34 ASP35 SER36 GLY37 ARG38 TYR39 LEU40 LEU41 GLY42 PRO43 GLU44 LEU45 GLU46 GLY47 PHE48 GLU49 ALA50 GLU51 PHE52 ALA53 ALA54 TYR55 CYS56 GLU57 THR58 ASP59 HIS60 ALA61 VAL62 GLY63 VAL64 ASN65 SER66 GLY67 MET68 ASP69 ALA70 LEU71 GLN72 LEU73 ALA74 LEU75 ARG76 GLY77 LEU78 GLY79 ILE80 GLY81 PRO82 GLY83 ASP84 GLU85 VAL86 ILE87 VAL88 PRO89 SER90 HIS91 THR92 TYR93 ILE94 ALA95 SER96 TRP97 LEU98 ALA99 VAL100 SER101 ALA102 THR103 GLY104 ALA105 THR106 PRO107 VAL108 PRO109 VAL110 GLU111 PRO112 HIS113 GLU114 ASP115 HIS116 PRO117 THR118 LEU119 ASP120 PRO121 LEU122 LEU123 VAL124 GLU125 LYS126 ALA127 ILE128 THR129 PRO130 ARG131 THR132 ARG133 ALA134 LEU135 LEU136 PRO137 VAL138 HIS139 LEU140 TYR141 GLY142 HIS143 PRO144 ALA145 ASP146 MET147 ASP148 ALA149 LEU150 ARG151 GLU152 LEU153 ALA154 ASP155 ARG156 HIS157 GLY158 LEU159 HIS160 ILE161 VAL162 GLU163 ASP164 ALA165 ALA166 GLN167 ALA168 HIS169 GLY170 ALA171 ARG172 TYR173 ARG174 GLY175 ARG176 ARG177 ILE178 GLY179 ALA180 GLY181 SER182 SER183 VAL184 ALA185 ALA186 PHE187 SER188 PHE189 TYR190 PRO191 GLY192 LYS193 ASN194 LEU195 GLY196 CYS197 PHE198 GLY199 ASP200 GLY201 GLY202 ALA203 VAL204 VAL205 THR206 GLY207 ASP208 PRO209 GLU210 LEU211 ALA212 GLU213 ARG214 LEU215 ARG216 MET217 LEU218 ARG219 ASN220 TYR221 GLY222 SER223 ARG224 GLN225 LYS226 TYR227 SER228 HIS229 GLU230 THR231 LYS232 GLY233 THR234 ASN235 SER236 ARG237 LEU238 ASP239 GLU240 MET241 GLN242 ALA243 ALA244 VAL245 LEU246 ARG247 ILE248 ARG249 LEU250 ALA251 HIS252 LEU253 ASP254 SER255 TRP256 ASN257 GLY258 ARG259 ARG260 SER261 ALA262 LEU263 ALA264 ALA265 GLU266 TYR267 LEU268 SER269 GLY270 LEU271 ALA272 GLY273 LEU274 PRO275 GLY276 ILE277 GLY278 LEU279 PRO280 VAL281 THR282 ALA283 PRO284 ASP285 THR286 ASP287 PRO288 VAL289 TRP290 HIS291 LEU292 PHE293 THR294 VAL295 ARG296 THR297 GLU298 ARG299 ARG300 ASP301 GLU302 LEU303 ARG304 SER305 HIS306 LEU307 ASP308 ALA309 ARG310 GLY311 ILE312 ASP313 THR314 LEU315 THR316 HIS317 TYR318 PRO319 VAL320 PRO321 VAL322 HIS323 LEU324 SER325 PRO326 ALA327 TYR328 ALA329 GLY330 GLU331 ALA332 PRO333 PRO334 GLU335 GLY336 SER337 LEU338 PRO339 ARG340 ALA341 GLU342 SER343 PHE344 ALA345 ARG346 GLN347 VAL348 LEU349 SER350 LEU351 PRO352 ILE353 GLY354 PRO355 HIS356 LEU357 GLU358 ARG359 PRO360 GLN361 ALA362 LEU363 ARG364 VAL365 ILE366 ASP367 ALA368 VAL369 ARG370 GLU371 TRP372 ALA373 GLU374 ARG375 VAL376
Unit 3 PRO8 ARG9 VAL10 PRO11 PHE12 LEU13 ASP14 LEU15 LYS16 ALA17 ALA18 TYR19 GLU20 GLU21 LEU22 ARG23 ALA24 GLU25 THR26 ASP27 ALA28 ALA29 ILE30 ALA31 ARG32 VAL33 LEU34 ASP35 SER36 GLY37 ARG38 TYR39 LEU40 LEU41 GLY42 PRO43 GLU44 LEU45 GLU46 GLY47 PHE48 GLU49 ALA50 GLU51 PHE52 ALA53 ALA54 TYR55 CYS56 GLU57 THR58 ASP59 HIS60 ALA61 VAL62 GLY63 VAL64 ASN65 SER66 GLY67 MET68 ASP69 ALA70 LEU71 GLN72 LEU73 ALA74 LEU75 ARG76 GLY77 LEU78 GLY79 ILE80 GLY81 PRO82 GLY83 ASP84 GLU85 VAL86 ILE87 VAL88 PRO89 SER90 HIS91 THR92 TYR93 ILE94 ALA95 SER96 TRP97 LEU98 ALA99 VAL100 SER101 ALA102 THR103 GLY104 ALA105 THR106 PRO107 VAL108 PRO109 VAL110 GLU111 PRO112 HIS113 GLU114 ASP115 HIS116 PRO117 THR118 LEU119 ASP120 PRO121 LEU122 LEU123 VAL124 GLU125 LYS126 ALA127 ILE128 THR129 PRO130 ARG131 THR132 ARG133 ALA134 LEU135 LEU136 PRO137 VAL138 HIS139 LEU140 TYR141 GLY142 HIS143 PRO144 ALA145 ASP146 MET147 ASP148 ALA149 LEU150 ARG151 GLU152 LEU153 ALA154 ASP155 ARG156 HIS157 GLY158 LEU159 HIS160 ILE161 VAL162 GLU163 ASP164 ALA165 ALA166 GLN167 ALA168 HIS169 GLY170 ALA171 ARG172 TYR173 ARG174 GLY175 ARG176 ARG177 ILE178 GLY179 ALA180 GLY181 SER182 SER183 VAL184 ALA185 ALA186 PHE187 SER188 PHE189 TYR190 PRO191 GLY192 LYS193 ASN194 LEU195 GLY196 CYS197 PHE198 GLY199 ASP200 GLY201 GLY202 ALA203 VAL204 VAL205 THR206 GLY207 ASP208 PRO209 GLU210 LEU211 ALA212 GLU213 ARG214 LEU215 ARG216 MET217 LEU218 ARG219 ASN220 TYR221 GLY222 SER223 ARG224 GLN225 LYS226 TYR227 SER228 HIS229 GLU230 THR231 LYS232 GLY233 THR234 ASN235 SER236 ARG237 LEU238 ASP239 GLU240 MET241 GLN242 ALA243 ALA244 VAL245 LEU246 ARG247 ILE248 ARG249 LEU250 ALA251 HIS252 LEU253 ASP254 SER255 TRP256 ASN257 GLY258 ARG259 ARG260 SER261 ALA262 LEU263 ALA264 ALA265 GLU266 TYR267 LEU268 SER269 GLY270 LEU271 ALA272 GLY273 LEU274 PRO275 GLY276 ILE277 GLY278 LEU279 PRO280 VAL281 THR282 ALA283 PRO284 ASP285 THR286 ASP287 PRO288 VAL289 TRP290 HIS291 LEU292 PHE293 THR294 VAL295 ARG296 THR297 GLU298 ARG299 ARG300 ASP301 GLU302 LEU303 ARG304 SER305 HIS306 LEU307 ASP308 ALA309 ARG310 GLY311 ILE312 ASP313 THR314 LEU315 THR316 HIS317 TYR318 PRO319 VAL320 PRO321 VAL322 HIS323 LEU324 SER325 PRO326 ALA327 TYR328 ALA329 GLY330 GLU331 ALA332 PRO333 PRO334 GLU335 GLY336 SER337 LEU338 PRO339 ARG340 ALA341 GLU342 SER343 PHE344 ALA345 ARG346 GLN347 VAL348 LEU349 SER350 LEU351 PRO352 ILE353 GLY354 PRO355 HIS356 LEU357 GLU358 ARG359 PRO360 GLN361 ALA362 LEU363 ARG364 VAL365 ILE366 ASP367 ALA368 VAL369 ARG370 GLU371 TRP372 ALA373 GLU374 ARG375 VAL376
Unit 4 THR7 PRO8 ARG9 VAL10 PRO11 PHE12 LEU13 ASP14 LEU15 LYS16 ALA17 ALA18 TYR19 GLU20 GLU21 LEU22 ARG23 ALA24 GLU25 THR26 ASP27 ALA28 ALA29 ILE30 ALA31 ARG32 VAL33 LEU34 ASP35 SER36 GLY37 ARG38 TYR39 LEU40 LEU41 GLY42 PRO43 GLU44 LEU45 GLU46 GLY47 PHE48 GLU49 ALA50 GLU51 PHE52 ALA53 ALA54 TYR55 CYS56 GLU57 THR58 ASP59 HIS60 ALA61 VAL62 GLY63 VAL64 ASN65 SER66 GLY67 MET68 ASP69 ALA70 LEU71 GLN72 LEU73 ALA74 LEU75 ARG76 GLY77 LEU78 GLY79 ILE80 GLY81 PRO82 GLY83 ASP84 GLU85 VAL86 ILE87 VAL88 PRO89 SER90 HIS91 THR92 TYR93 ILE94 ALA95 SER96 TRP97 LEU98 ALA99 VAL100 SER101 ALA102 THR103 GLY104 ALA105 THR106 PRO107 VAL108 PRO109 VAL110 GLU111 PRO112 HIS113 GLU114 ASP115 HIS116 PRO117 THR118 LEU119 ASP120 PRO121 LEU122 LEU123 VAL124 GLU125 LYS126 ALA127 ILE128 THR129 PRO130 ARG131 THR132 ARG133 ALA134 LEU135 LEU136 PRO137 VAL138 HIS139 LEU140 TYR141 GLY142 HIS143 PRO144 ALA145 ASP146 MET147 ASP148 ALA149 LEU150 ARG151 GLU152 LEU153 ALA154 ASP155 ARG156 HIS157 GLY158 LEU159 HIS160 ILE161 VAL162 GLU163 ASP164 ALA165 ALA166 GLN167 ALA168 HIS169 GLY170 ALA171 ARG172 TYR173 ARG174 GLY175 ARG176 ARG177 ILE178 GLY179 ALA180 GLY181 SER182 SER183 VAL184 ALA185 ALA186 PHE187 SER188 PHE189 TYR190 PRO191 GLY192 LYS193 ASN194 LEU195 GLY196 CYS197 PHE198 GLY199 ASP200 GLY201 GLY202 ALA203 VAL204 VAL205 THR206 GLY207 ASP208 PRO209 GLU210 LEU211 ALA212 GLU213 ARG214 LEU215 ARG216 MET217 LEU218 ARG219 ASN220 TYR221 GLY222 SER223 ARG224 GLN225 LYS226 TYR227 SER228 HIS229 GLU230 THR231 LYS232 GLY233 THR234 ASN235 SER236 ARG237 LEU238 ASP239 GLU240 MET241 GLN242 ALA243 ALA244 VAL245 LEU246 ARG247 ILE248 ARG249 LEU250 ALA251 HIS252 LEU253 ASP254 SER255 TRP256 ASN257 GLY258 ARG259 ARG260 SER261 ALA262 LEU263 ALA264 ALA265 GLU266 TYR267 LEU268 SER269 GLY270 LEU271 ALA272 GLY273 LEU274 PRO275 GLY276 ILE277 GLY278 LEU279 PRO280 VAL281 THR282 ALA283 PRO284 ASP285 THR286 ASP287 PRO288 VAL289 TRP290 HIS291 LEU292 PHE293 THR294 VAL295 ARG296 THR297 GLU298 ARG299 ARG300 ASP301 GLU302 LEU303 ARG304 SER305 HIS306 LEU307 ASP308 ALA309 ARG310 GLY311 ILE312 ASP313 THR314 LEU315 THR316 HIS317 TYR318 PRO319 VAL320 PRO321 VAL322 HIS323 LEU324 SER325 PRO326 ALA327 TYR328 ALA329 GLY330 GLU331 ALA332 PRO333 PRO334 GLU335 GLY336 SER337 LEU338 PRO339 ARG340 ALA341 GLU342 SER343 PHE344 ALA345 ARG346 GLN347 VAL348 LEU349 SER350 LEU351 PRO352 ILE353 GLY354 PRO355 HIS356 LEU357 GLU358 ARG359 PRO360 GLN361 ALA362 LEU363 ARG364 VAL365 ILE366 ASP367 ALA368 VAL369 ARG370 GLU371 TRP372 ALA373 GLU374 ARG375 VAL376
Ligands
Unit 5 CL380 PGU1020 NA1022 EDO1023 EDO1024
Unit 6 CL380 EDO381 EDO382 PGU1021
Unit 7 CL380 PGU1023 NA1025 EDO1026
Unit 8 CL380 PGU1024
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany