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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF FITAB BOUND TO IR36 DNA FRAGMENT
Keywords PIN DOMAIN, RHH PROTEIN, DNA BINDING, TETRAMER OF DIMERS, GE REGULATION-DNA COMPLEX COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

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Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  DNA    U 36 712 20
2  DNA    V 36 718 20
3  Protein   TRAFFICKING PROTEIN B  A 143 1122 0
4  Protein   TRAFFICKING PROTEIN B  B 140 1091 0
5  Protein   TRAFFICKING PROTEIN B  C 143 1122 0
6  Protein   TRAFFICKING PROTEIN B  D 140 1091 0
7  Protein   TRAFFICKING PROTEIN A  E 68 510 0
8  Protein   TRAFFICKING PROTEIN A  F 64 479 0
9  Protein   TRAFFICKING PROTEIN A  G 67 505 0
10  Protein   TRAFFICKING PROTEIN A  H 63 470 0
11 Water     46 0 46
total       946 7820 86

Proteins
Unit 3 MET1 ILE2 LEU3 LEU4 ASP5 THR6 ASN7 VAL8 ILE9 SER10 GLU11 PRO12 LEU13 ARG14 PRO15 GLN16 PRO17 ASN18 GLU19 ARG20 VAL21 VAL22 ALA23 TRP24 LEU25 ASP26 SER27 LEU28 ILE29 LEU30 GLU31 ASP32 VAL33 TYR34 LEU35 SER36 ALA37 ILE38 THR39 VAL40 ALA41 GLU42 MET43 ARG44 LEU45 GLY46 VAL47 ALA48 LEU49 LEU50 LEU51 ASN52 GLY53 LYS54 LYS55 LYS56 ASN57 VAL58 LEU59 HIS60 GLU61 ARG62 MET63 GLU64 GLN65 SER66 ILE67 LEU68 PRO69 LEU70 PHE71 ALA72 GLY73 ARG74 ILE75 LEU76 PRO77 PHE78 ASP79 GLU80 PRO81 VAL82 ALA83 ALA84 ILE85 TYR86 ALA87 GLN88 ILE89 ARG90 SER91 TYR92 ALA93 LYS94 THR95 HIS96 GLY97 LYS98 GLU99 ILE100 ALA101 ALA102 ALA103 ASP104 GLY105 TYR106 ILE107 ALA108 ALA109 THR110 ALA111 LYS112 GLN113 HIS114 SER115 MET116 THR117 VAL118 ALA119 THR120 ARG121 ASP122 THR123 GLY124 SER125 PHE126 PHE127 ALA128 ALA129 ASP130 VAL131 ALA132 VAL133 PHE134 ASN135 PRO136 TRP137 HIS138 LEU139 GLU140 HIS141 HIS142 HIS143
Unit 4 MET1 ILE2 LEU3 LEU4 ASP5 THR6 ASN7 VAL8 ILE9 SER10 GLU11 PRO12 LEU13 ARG14 PRO15 GLN16 PRO17 ASN18 GLU19 ARG20 VAL21 VAL22 ALA23 TRP24 LEU25 ASP26 SER27 LEU28 ILE29 LEU30 GLU31 ASP32 VAL33 TYR34 LEU35 SER36 ALA37 ILE38 THR39 VAL40 ALA41 GLU42 MET43 ARG44 LEU45 GLY46 VAL47 ALA48 LEU49 LEU50 LEU51 ASN52 GLY53 LYS54 LYS55 LYS56 ASN57 VAL58 LEU59 HIS60 GLU61 ARG62 MET63 GLU64 GLN65 SER66 ILE67 LEU68 PRO69 LEU70 PHE71 ALA72 GLY73 ARG74 ILE75 LEU76 PRO77 PHE78 ASP79 GLU80 PRO81 VAL82 ALA83 ALA84 ILE85 TYR86 ALA87 GLN88 ILE89 ARG90 SER91 TYR92 ALA93 LYS94 THR95 HIS96 GLY97 LYS98 GLU99 ILE100 ALA101 ALA102 ALA103 ASP104 GLY105 TYR106 ILE107 ALA108 ALA109 THR110 ALA111 LYS112 GLN113 HIS114 SER115 MET116 THR117 VAL118 ALA119 THR120 ARG121 ASP122 THR123 GLY124 SER125 PHE126 PHE127 ALA128 ALA129 ASP130 VAL131 ALA132 VAL133 PHE134 ASN135 PRO136 TRP137 HIS138 LEU139 GLU140
Unit 5 MET1 ILE2 LEU3 LEU4 ASP5 THR6 ASN7 VAL8 ILE9 SER10 GLU11 PRO12 LEU13 ARG14 PRO15 GLN16 PRO17 ASN18 GLU19 ARG20 VAL21 VAL22 ALA23 TRP24 LEU25 ASP26 SER27 LEU28 ILE29 LEU30 GLU31 ASP32 VAL33 TYR34 LEU35 SER36 ALA37 ILE38 THR39 VAL40 ALA41 GLU42 MET43 ARG44 LEU45 GLY46 VAL47 ALA48 LEU49 LEU50 LEU51 ASN52 GLY53 LYS54 LYS55 LYS56 ASN57 VAL58 LEU59 HIS60 GLU61 ARG62 MET63 GLU64 GLN65 SER66 ILE67 LEU68 PRO69 LEU70 PHE71 ALA72 GLY73 ARG74 ILE75 LEU76 PRO77 PHE78 ASP79 GLU80 PRO81 VAL82 ALA83 ALA84 ILE85 TYR86 ALA87 GLN88 ILE89 ARG90 SER91 TYR92 ALA93 LYS94 THR95 HIS96 GLY97 LYS98 GLU99 ILE100 ALA101 ALA102 ALA103 ASP104 GLY105 TYR106 ILE107 ALA108 ALA109 THR110 ALA111 LYS112 GLN113 HIS114 SER115 MET116 THR117 VAL118 ALA119 THR120 ARG121 ASP122 THR123 GLY124 SER125 PHE126 PHE127 ALA128 ALA129 ASP130 VAL131 ALA132 VAL133 PHE134 ASN135 PRO136 TRP137 HIS138 LEU139 GLU140 HIS141 HIS142 HIS143
Unit 6 MET1 ILE2 LEU3 LEU4 ASP5 THR6 ASN7 VAL8 ILE9 SER10 GLU11 PRO12 LEU13 ARG14 PRO15 GLN16 PRO17 ASN18 GLU19 ARG20 VAL21 VAL22 ALA23 TRP24 LEU25 ASP26 SER27 LEU28 ILE29 LEU30 GLU31 ASP32 VAL33 TYR34 LEU35 SER36 ALA37 ILE38 THR39 VAL40 ALA41 GLU42 MET43 ARG44 LEU45 GLY46 VAL47 ALA48 LEU49 LEU50 LEU51 ASN52 GLY53 LYS54 LYS55 LYS56 ASN57 VAL58 LEU59 HIS60 GLU61 ARG62 MET63 GLU64 GLN65 SER66 ILE67 LEU68 PRO69 LEU70 PHE71 ALA72 GLY73 ARG74 ILE75 LEU76 PRO77 PHE78 ASP79 GLU80 PRO81 VAL82 ALA83 ALA84 ILE85 TYR86 ALA87 GLN88 ILE89 ARG90 SER91 TYR92 ALA93 LYS94 THR95 HIS96 GLY97 LYS98 GLU99 ILE100 ALA101 ALA102 ALA103 ASP104 GLY105 TYR106 ILE107 ALA108 ALA109 THR110 ALA111 LYS112 GLN113 HIS114 SER115 MET116 THR117 VAL118 ALA119 THR120 ARG121 ASP122 THR123 GLY124 SER125 PHE126 PHE127 ALA128 ALA129 ASP130 VAL131 ALA132 VAL133 PHE134 ASN135 PRO136 TRP137 HIS138 LEU139 GLU140
Unit 7 ALA2 SER3 VAL4 VAL5 ILE6 ARG7 ASN8 LEU9 SER10 GLU11 ALA12 THR13 HIS14 ASN15 ALA16 ILE17 LYS18 PHE19 ARG20 ALA21 ARG22 ALA23 ALA24 GLY25 ARG26 SER27 THR28 GLU29 ALA30 GLU31 ILE32 ARG33 LEU34 ILE35 LEU36 ASP37 ASN38 ILE39 ALA40 LYS41 ALA42 GLN43 GLN44 THR45 VAL46 ARG47 LEU48 GLY49 SER50 MET51 LEU52 ALA53 SER54 ILE55 GLY56 GLN57 GLU58 ILE59 GLY60 GLY61 VAL62 GLU63 LEU64 GLU65 ASP66 VAL67 ARG68 GLY69
Unit 8 ALA2 SER3 VAL4 VAL5 ILE6 ARG7 ASN8 LEU9 SER10 GLU11 ALA12 THR13 HIS14 ASN15 ALA16 ILE17 LYS18 PHE19 ARG20 ALA21 ARG22 ALA23 ALA24 GLY25 ARG26 SER27 THR28 GLU29 ALA30 GLU31 ILE32 ARG33 LEU34 ILE35 LEU36 ASP37 ASN38 ILE39 ALA40 LYS41 ALA42 GLN43 GLN44 THR45 VAL46 ARG47 LEU48 GLY49 SER50 MET51 LEU52 ALA53 SER54 ILE55 GLY56 GLN57 GLU58 ILE59 GLY60 GLY61 VAL62 GLU63 LEU64 GLU65
Unit 9 ALA2 SER3 VAL4 VAL5 ILE6 ARG7 ASN8 LEU9 SER10 GLU11 ALA12 THR13 HIS14 ASN15 ALA16 ILE17 LYS18 PHE19 ARG20 ALA21 ARG22 ALA23 ALA24 GLY25 ARG26 SER27 THR28 GLU29 ALA30 GLU31 ILE32 ARG33 LEU34 ILE35 LEU36 ASP37 ASN38 ILE39 ALA40 LYS41 ALA42 GLN43 GLN44 THR45 VAL46 ARG47 LEU48 GLY49 SER50 MET51 LEU52 ALA53 SER54 ILE55 GLY56 GLN57 GLU58 ILE59 GLY60 GLY61 VAL62 GLU63 LEU64 GLU65 ASP66 VAL67 ARG68
Unit 10 ALA2 SER3 VAL4 VAL5 ILE6 ARG7 ASN8 LEU9 SER10 GLU11 ALA12 THR13 HIS14 ASN15 ALA16 ILE17 LYS18 PHE19 ARG20 ALA21 ARG22 ALA23 ALA24 GLY25 ARG26 SER27 THR28 GLU29 ALA30 GLU31 ILE32 ARG33 LEU34 ILE35 LEU36 ASP37 ASN38 ILE39 ALA40 LYS41 ALA42 GLN43 GLN44 THR45 VAL46 ARG47 LEU48 GLY49 SER50 MET51 LEU52 ALA53 SER54 ILE55 GLY56 GLN57 GLU58 ILE59 GLY60 GLY61 VAL62 GLU63 LEU64

Nucleic acids
Unit 1 DA1 DG2 DA3 DT4 DT5 DG6 DC7 DT8 DA9 DT10 DC11 DA12 DT13 DT14 DT15 DT16 DT17 DT18 DT19 DT20 DA21 DT22 DT23 DT24 DT25 DG26 DA27 DT28 DA29 DG30 DC31 DA32 DT33 5IU34 DT35 DG36
Unit 2 DC37 DA38 DA39 DA40 DT41 DG42 DC43 DT44 DA45 DT46 DC47 DA48 DA49 DA50 DA51 5IU52 DA53 DA54 DA55 DA56 DA57 DA58 DA59 DA60 DT61 DG62 DA63 DT64 DA65 DG66 DC67 DA68 DA69 DT70 DC71 DT72

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany