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Sequence, Chains, Asymmetric and Biological Units

Title THEORETICAL MODEL OF YEAST CENTROMERIC NUCLEOSOME
Keywords CSE4, CENH3, CENTROMERIC HISTONE VARIANT NUCLEOSOME, H3- VARIANT NUCLEOSOME
Experiment theoretical model
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2FSB     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   CHROMATIN-ASSOCIATED PROTEIN CSE4  A 228 1877 0
2  Protein   HISTONE H4  B 102 793 0
3  Protein   HISTONE H2A VARIANT  C 134 1005 0
4  Protein   HISTONE H2B.2  D 130 992 0
5  Protein   CHROMATIN-ASSOCIATED PROTEIN CSE4  E 228 1877 0
6  Protein   HISTONE H4  F 102 793 0
7  Protein   HISTONE H2A VARIANT  G 134 1005 0
8  Protein   HISTONE H2B.2  H 130 992 0
9  DNA    I 146 2990 0
10  DNA    J 146 2990 0
total       1480 15314 0

Proteins
Unit 1 MET1 SER2 SER3 LYS4 GLN5 GLN6 TRP7 VAL8 SER9 SER10 ALA11 ILE12 GLN13 SER14 ASP15 SER16 SER17 GLY18 ARG19 SER20 LEU21 SER22 ASN23 VAL24 ASN25 ARG26 LEU27 ALA28 GLY29 ASP30 GLN31 GLN32 SER33 ILE34 ASN35 ASP36 ARG37 ALA38 LEU39 SER40 LEU41 LEU42 GLN43 ARG44 THR45 ARG46 ALA47 THR48 LYS49 ASN50 LEU51 PHE52 PRO53 ARG54 ARG55 GLU56 GLU57 ARG58 ARG59 ARG60 TYR61 GLU62 SER63 SER64 LYS65 SER66 ASP67 LEU68 ASP69 ILE70 GLU71 THR72 ASP73 TYR74 GLU75 ASP76 GLN77 ALA78 GLY79 ASN80 LEU81 GLU82 ILE83 GLU84 THR85 GLU86 ASN87 GLU88 GLU89 GLU90 ALA91 GLU92 MET93 GLU94 THR95 GLU96 VAL97 PRO98 ALA99 PRO100 VAL101 ARG102 THR103 HIS104 SER105 TYR106 ALA107 LEU108 ASP109 ARG110 TYR111 VAL112 ARG113 GLN114 LYS115 ARG116 ARG117 GLU118 LYS119 GLN120 ARG121 LYS122 GLN123 SER124 LEU125 LYS126 ARG127 VAL128 GLU129 LYS130 LYS131 TYR132 THR133 PRO134 SER135 GLU136 LEU137 ALA138 LEU139 TYR140 GLU141 ILE142 ARG143 LYS144 TYR145 GLN146 ARG147 SER148 THR149 ASP150 LEU151 LEU152 ILE153 SER154 LYS155 ILE156 PRO157 PHE158 ALA159 ARG160 LEU161 VAL162 LYS163 GLU164 VAL165 THR166 ASP167 GLU168 PHE169 THR170 THR171 LYS172 ASP173 GLN174 ASP175 LEU176 ARG177 TRP178 GLN179 SER180 MET181 ALA182 ILE183 MET184 ALA185 LEU186 GLN187 GLU188 ALA189 SER190 GLU191 ALA192 TYR193 LEU194 VAL195 GLY196 LEU197 LEU198 GLU199 HIS200 THR201 ASN202 LEU203 LEU204 ALA205 LEU206 HIS207 ALA208 LYS209 ARG210 ILE211 THR212 ILE213 MET214 LYS215 LYS216 ASP217 MET218 GLN219 LEU220 ALA221 ARG222 ARG223 ILE224 ARG225 GLY226 GLN227 PHE228
Unit 2 SER1 GLY2 ARG3 GLY4 LYS5 GLY6 GLY7 LYS8 GLY9 LEU10 GLY11 LYS12 GLY13 GLY14 ALA15 LYS16 ARG17 HIS18 ARG19 LYS20 ILE21 LEU22 ARG23 ASP24 ASN25 ILE26 GLN27 GLY28 ILE29 THR30 LYS31 PRO32 ALA33 ILE34 ARG35 ARG36 LEU37 ALA38 ARG39 ARG40 GLY41 GLY42 VAL43 LYS44 ARG45 ILE46 SER47 GLY48 LEU49 ILE50 TYR51 GLU52 GLU53 VAL54 ARG55 ALA56 VAL57 LEU58 LYS59 SER60 PHE61 LEU62 GLU63 SER64 VAL65 ILE66 ARG67 ASP68 SER69 VAL70 THR71 TYR72 THR73 GLU74 HIS75 ALA76 LYS77 ARG78 LYS79 THR80 VAL81 THR82 SER83 LEU84 ASP85 VAL86 VAL87 TYR88 ALA89 LEU90 LYS91 ARG92 GLN93 GLY94 ARG95 THR96 LEU97 TYR98 GLY99 PHE100 GLY101 GLY102
Unit 3 MET1 SER2 GLY3 LYS4 ALA5 HIS6 GLY7 GLY8 LYS9 GLY10 LYS11 SER12 GLY13 ALA14 LYS15 ASP16 SER17 GLY18 SER19 LEU20 ARG21 SER22 GLN23 SER24 SER25 SER26 ALA27 ARG28 ALA29 GLY30 LEU31 GLN32 PHE33 PRO34 VAL35 GLY36 ARG37 ILE38 LYS39 ARG40 TYR41 LEU42 LYS43 ARG44 HIS45 ALA46 THR47 GLY48 ARG49 THR50 ARG51 VAL52 GLY53 SER54 LYS55 ALA56 ALA57 ILE58 TYR59 LEU60 THR61 ALA62 VAL63 LEU64 GLU65 TYR66 LEU67 THR68 ALA69 GLU70 VAL71 LEU72 GLU73 LEU74 ALA75 GLY76 ASN77 ALA78 ALA79 LYS80 ASP81 LEU82 LYS83 VAL84 LYS85 ARG86 ILE87 THR88 PRO89 ARG90 HIS91 LEU92 GLN93 LEU94 ALA95 ILE96 ARG97 GLY98 ASP99 ASP100 GLU101 LEU102 ASP103 SER104 LEU105 ILE106 ARG107 ALA108 THR109 ILE110 ALA111 SER112 GLY113 GLY114 VAL115 LEU116 PRO117 HIS118 ILE119 ASN120 LYS121 ALA122 LEU123 LEU124 LEU125 LYS126 VAL127 GLU128 LYS129 LYS130 GLY131 SER132 LYS133 LYS134
Unit 4 SER1 SER2 ALA3 ALA4 GLU5 LYS6 LYS7 PRO8 ALA9 SER10 LYS11 ALA12 PRO13 ALA14 GLU15 LYS16 LYS17 PRO18 ALA19 ALA20 LYS21 LYS22 THR23 SER24 THR25 SER26 VAL27 ASP28 GLY29 LYS30 LYS31 ARG32 SER33 LYS34 VAL35 ARG36 LYS37 GLU38 THR39 TYR40 SER41 SER42 TYR43 ILE44 TYR45 LYS46 VAL47 LEU48 LYS49 GLN50 THR51 HIS52 PRO53 ASP54 THR55 GLY56 ILE57 SER58 GLN59 LYS60 SER61 MET62 SER63 ILE64 LEU65 ASN66 SER67 PHE68 VAL69 ASN70 ASP71 ILE72 PHE73 GLU74 ARG75 ILE76 ALA77 THR78 GLU79 ALA80 SER81 LYS82 LEU83 ALA84 ALA85 TYR86 ASN87 LYS88 LYS89 SER90 THR91 ILE92 SER93 ALA94 ARG95 GLU96 ILE97 GLN98 THR99 ALA100 VAL101 ARG102 LEU103 ILE104 LEU105 PRO106 GLY107 GLU108 LEU109 ALA110 LYS111 HIS112 ALA113 VAL114 SER115 GLU116 GLY117 THR118 ARG119 ALA120 VAL121 THR122 LYS123 TYR124 SER125 SER126 SER127 THR128 GLN129 ALA130
Unit 5 MET1 SER2 SER3 LYS4 GLN5 GLN6 TRP7 VAL8 SER9 SER10 ALA11 ILE12 GLN13 SER14 ASP15 SER16 SER17 GLY18 ARG19 SER20 LEU21 SER22 ASN23 VAL24 ASN25 ARG26 LEU27 ALA28 GLY29 ASP30 GLN31 GLN32 SER33 ILE34 ASN35 ASP36 ARG37 ALA38 LEU39 SER40 LEU41 LEU42 GLN43 ARG44 THR45 ARG46 ALA47 THR48 LYS49 ASN50 LEU51 PHE52 PRO53 ARG54 ARG55 GLU56 GLU57 ARG58 ARG59 ARG60 TYR61 GLU62 SER63 SER64 LYS65 SER66 ASP67 LEU68 ASP69 ILE70 GLU71 THR72 ASP73 TYR74 GLU75 ASP76 GLN77 ALA78 GLY79 ASN80 LEU81 GLU82 ILE83 GLU84 THR85 GLU86 ASN87 GLU88 GLU89 GLU90 ALA91 GLU92 MET93 GLU94 THR95 GLU96 VAL97 PRO98 ALA99 PRO100 VAL101 ARG102 THR103 HIS104 SER105 TYR106 ALA107 LEU108 ASP109 ARG110 TYR111 VAL112 ARG113 GLN114 LYS115 ARG116 ARG117 GLU118 LYS119 GLN120 ARG121 LYS122 GLN123 SER124 LEU125 LYS126 ARG127 VAL128 GLU129 LYS130 LYS131 TYR132 THR133 PRO134 SER135 GLU136 LEU137 ALA138 LEU139 TYR140 GLU141 ILE142 ARG143 LYS144 TYR145 GLN146 ARG147 SER148 THR149 ASP150 LEU151 LEU152 ILE153 SER154 LYS155 ILE156 PRO157 PHE158 ALA159 ARG160 LEU161 VAL162 LYS163 GLU164 VAL165 THR166 ASP167 GLU168 PHE169 THR170 THR171 LYS172 ASP173 GLN174 ASP175 LEU176 ARG177 TRP178 GLN179 SER180 MET181 ALA182 ILE183 MET184 ALA185 LEU186 GLN187 GLU188 ALA189 SER190 GLU191 ALA192 TYR193 LEU194 VAL195 GLY196 LEU197 LEU198 GLU199 HIS200 THR201 ASN202 LEU203 LEU204 ALA205 LEU206 HIS207 ALA208 LYS209 ARG210 ILE211 THR212 ILE213 MET214 LYS215 LYS216 ASP217 MET218 GLN219 LEU220 ALA221 ARG222 ARG223 ILE224 ARG225 GLY226 GLN227 PHE228
Unit 6 SER1 GLY2 ARG3 GLY4 LYS5 GLY6 GLY7 LYS8 GLY9 LEU10 GLY11 LYS12 GLY13 GLY14 ALA15 LYS16 ARG17 HIS18 ARG19 LYS20 ILE21 LEU22 ARG23 ASP24 ASN25 ILE26 GLN27 GLY28 ILE29 THR30 LYS31 PRO32 ALA33 ILE34 ARG35 ARG36 LEU37 ALA38 ARG39 ARG40 GLY41 GLY42 VAL43 LYS44 ARG45 ILE46 SER47 GLY48 LEU49 ILE50 TYR51 GLU52 GLU53 VAL54 ARG55 ALA56 VAL57 LEU58 LYS59 SER60 PHE61 LEU62 GLU63 SER64 VAL65 ILE66 ARG67 ASP68 SER69 VAL70 THR71 TYR72 THR73 GLU74 HIS75 ALA76 LYS77 ARG78 LYS79 THR80 VAL81 THR82 SER83 LEU84 ASP85 VAL86 VAL87 TYR88 ALA89 LEU90 LYS91 ARG92 GLN93 GLY94 ARG95 THR96 LEU97 TYR98 GLY99 PHE100 GLY101 GLY102
Unit 7 MET1 SER2 GLY3 LYS4 ALA5 HIS6 GLY7 GLY8 LYS9 GLY10 LYS11 SER12 GLY13 ALA14 LYS15 ASP16 SER17 GLY18 SER19 LEU20 ARG21 SER22 GLN23 SER24 SER25 SER26 ALA27 ARG28 ALA29 GLY30 LEU31 GLN32 PHE33 PRO34 VAL35 GLY36 ARG37 ILE38 LYS39 ARG40 TYR41 LEU42 LYS43 ARG44 HIS45 ALA46 THR47 GLY48 ARG49 THR50 ARG51 VAL52 GLY53 SER54 LYS55 ALA56 ALA57 ILE58 TYR59 LEU60 THR61 ALA62 VAL63 LEU64 GLU65 TYR66 LEU67 THR68 ALA69 GLU70 VAL71 LEU72 GLU73 LEU74 ALA75 GLY76 ASN77 ALA78 ALA79 LYS80 ASP81 LEU82 LYS83 VAL84 LYS85 ARG86 ILE87 THR88 PRO89 ARG90 HIS91 LEU92 GLN93 LEU94 ALA95 ILE96 ARG97 GLY98 ASP99 ASP100 GLU101 LEU102 ASP103 SER104 LEU105 ILE106 ARG107 ALA108 THR109 ILE110 ALA111 SER112 GLY113 GLY114 VAL115 LEU116 PRO117 HIS118 ILE119 ASN120 LYS121 ALA122 LEU123 LEU124 LEU125 LYS126 VAL127 GLU128 LYS129 LYS130 GLY131 SER132 LYS133 LYS134
Unit 8 SER1 SER2 ALA3 ALA4 GLU5 LYS6 LYS7 PRO8 ALA9 SER10 LYS11 ALA12 PRO13 ALA14 GLU15 LYS16 LYS17 PRO18 ALA19 ALA20 LYS21 LYS22 THR23 SER24 THR25 SER26 VAL27 ASP28 GLY29 LYS30 LYS31 ARG32 SER33 LYS34 VAL35 ARG36 LYS37 GLU38 THR39 TYR40 SER41 SER42 TYR43 ILE44 TYR45 LYS46 VAL47 LEU48 LYS49 GLN50 THR51 HIS52 PRO53 ASP54 THR55 GLY56 ILE57 SER58 GLN59 LYS60 SER61 MET62 SER63 ILE64 LEU65 ASN66 SER67 PHE68 VAL69 ASN70 ASP71 ILE72 PHE73 GLU74 ARG75 ILE76 ALA77 THR78 GLU79 ALA80 SER81 LYS82 LEU83 ALA84 ALA85 TYR86 ASN87 LYS88 LYS89 SER90 THR91 ILE92 SER93 ALA94 ARG95 GLU96 ILE97 GLN98 THR99 ALA100 VAL101 ARG102 LEU103 ILE104 LEU105 PRO106 GLY107 GLU108 LEU109 ALA110 LYS111 HIS112 ALA113 VAL114 SER115 GLU116 GLY117 THR118 ARG119 ALA120 VAL121 THR122 LYS123 TYR124 SER125 SER126 SER127 THR128 GLN129 ALA130

Nucleic acids
Unit 9 A1 T2 C3 A4 A5 T6 A7 T8 C9 C10 A11 C12 C13 T14 G15 C16 A17 G18 A19 T20 T21 C22 T23 A24 C25 C26 A27 A28 A29 A30 G31 T32 G33 T34 A35 T36 T37 T38 G39 G40 A41 A42 A43 C44 T45 G46 C47 T48 C49 C50 A51 T52 C53 A54 A55 A56 A57 G58 G59 C60 A61 T62 G63 T64 T65 C66 A67 G68 C69 G70 G71 A72 A73 T74 T75 C76 C77 G78 C79 T80 G81 A82 A83 C84 A85 T86 G87 C88 C89 T90 T91 T92 T93 G94 A95 T96 G97 G98 A99 G100 C101 A102 G103 T104 T105 T106 C107 C108 A109 A110 A111 T112 A113 C114 A115 C116 T117 T118 T119 T120 G121 G122 T123 A124 G125 A126 A127 T128 C129 T130 G131 C132 A133 G134 G135 T136 G137 G138 A139 T140 A141 T142 T143 G144 A145 T146
Unit 10 A1 T2 C3 A4 A5 T6 A7 T8 C9 C10 A11 C12 C13 T14 G15 C16 A17 G18 A19 T20 T21 C22 T23 A24 C25 C26 A27 A28 A29 A30 G31 T32 G33 T34 A35 T36 T37 T38 G39 G40 A41 A42 A43 C44 T45 G46 C47 T48 C49 C50 A51 T52 C53 A54 A55 A56 A57 G58 G59 C60 A61 T62 G63 T64 T65 C66 A67 G68 C69 G70 G71 A72 A73 T74 T75 C76 C77 G78 C79 T80 G81 A82 A83 C84 A85 T86 G87 C88 C89 T90 T91 T92 T93 G94 A95 T96 G97 G98 A99 G100 C101 A102 G103 T104 T105 T106 C107 C108 A109 A110 A111 T112 A113 C114 A115 C116 T117 T118 T119 T120 G121 G122 T123 A124 G125 A126 A127 T128 C129 T130 G131 C132 A133 G134 G135 T136 G137 G138 A139 T140 A141 T142 T143 G144 A145 T146

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany