2DFK - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF THE CDC42-COLLYBISTIN II COMPLEX
• Keywords: DH DOMAIN, PH DOMAIN, CELL CYCLE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2DFK	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	COLLYBISTIN II	A	365	3078	0
2	Protein	CELL DIVISION CYCLE 42 ISOFORM 1	B	187	1461	0
3	Protein	COLLYBISTIN II	C	353	2991	0
4	Protein	CELL DIVISION CYCLE 42 ISOFORM 1	D	189	1472	0
5	Ligand	COLLYBISTIN II	A	3	0	18
6	Ligand	CELL DIVISION CYCLE 42 ISOFORM 1	B	2	0	11
7	Ligand	CELL DIVISION CYCLE 42 ISOFORM 1	D	3	0	17
8	Water			581	0	581
total				1683	9002	627

Proteins

Unit 1	CYS 37 LEU 38 CYS 39 LEU 40 GLY 41 ARG 42 PRO 43 LEU 44 GLN 45 ASN 46 ARG 47 ASP 48 GLN 49 MET 50 ARG 51 ALA 52 ASN 53 VAL 54 ILE 55 ASN 56 GLU 57 ILE 58 MET 59 SER 60 THR 61 GLU 62 ARG 63 HIS 64 TYR 65 ILE 66 LYS 67 HIS 68 LEU 69 LYS 70 ASP 71 ILE 72 CYS 73 GLU 74 GLY 75 TYR 76 LEU 77 LYS 78 GLN 79 CYS 80 ARG 81 LYS 82 ARG 83 ARG 84 ASP 85 MET 86 PHE 87 SER 88 ASP 89 GLU 90 GLN 91 LEU 92 LYS 93 VAL 94 ILE 95 PHE 96 GLY 97 ASN 98 ILE 99 GLU 100 ASP 101 ILE 102 TYR 103 ARG 104 PHE 105 GLN 106 MET 107 GLY 108 PHE 109 VAL 110 ARG 111 ASP 112 LEU 113 GLU 114 LYS 115 GLN 116 TYR 117 ASN 118 ASN 119 ASP 120 ASP 121 PRO 122 HIS 123 LEU 124 SER 125 GLU 126 ILE 127 GLY 128 PRO 129 CYS 130 PHE 131 LEU 132 GLU 133 HIS 134 GLN 135 ASP 136 GLY 137 PHE 138 TRP 139 ILE 140 TYR 141 SER 142 GLU 143 TYR 144 CYS 145 ASN 146 ASN 147 HIS 148 LEU 149 ASP 150 ALA 151 CYS 152 MET 153 GLU 154 LEU 155 SER 156 LYS 157 LEU 158 MET 159 LYS 160 ASP 161 SER 162 ARG 163 TYR 164 GLN 165 HIS 166 PHE 167 PHE 168 GLU 169 ALA 170 CYS 171 ARG 172 LEU 173 LEU 174 GLN 175 GLN 176 MET 177 ILE 178 ASP 179 ILE 180 ALA 181 ILE 182 ASP 183 GLY 184 PHE 185 LEU 186 LEU 187 THR 188 PRO 189 VAL 190 GLN 191 LYS 192 ILE 193 CYS 194 LYS 195 TYR 196 PRO 197 LEU 198 GLN 199 LEU 200 ALA 201 GLU 202 LEU 203 LEU 204 LYS 205 TYR 206 THR 207 ALA 208 GLN 209 ASP 210 HIS 211 SER 212 ASP 213 TYR 214 ARG 215 TYR 216 VAL 217 ALA 218 ALA 219 ALA 220 LEU 221 ALA 222 VAL 223 MET 224 ARG 225 ASN 226 VAL 227 THR 228 GLN 229 GLN 230 ILE 231 ASN 232 GLU 233 ARG 234 LYS 235 ARG 236 ARG 237 LEU 238 GLU 239 ASN 240 ILE 241 ASP 242 LYS 243 ILE 244 ALA 245 GLN 246 TRP 247 GLN 248 ALA 249 SER 250 VAL 251 LEU 252 ASP 253 TRP 254 GLU 255 GLY 256 ASP 257 ASP 258 ILE 259 LEU 260 ASP 261 ARG 262 SER 263 SER 264 GLU 265 LEU 266 ILE 267 TYR 268 THR 269 GLY 270 GLU 271 MET 272 ALA 273 TRP 274 ILE 275 TYR 276 GLN 277 PRO 278 TYR 279 GLY 280 ARG 281 ASN 282 GLN 283 GLN 284 ARG 285 VAL 286 PHE 287 PHE 288 LEU 289 PHE 290 ASP 291 HIS 292 GLN 293 MET 294 VAL 295 LEU 296 CYS 297 LYS 298 LYS 299 ASP 300 LEU 301 ILE 302 ARG 303 ARG 304 ASP 305 ILE 306 LEU 307 TYR 308 TYR 309 LYS 310 GLY 311 ARG 312 ILE 313 ASP 314 MET 315 ASP 316 LYS 317 TYR 318 GLU 319 VAL 320 ILE 321 ASP 322 ILE 323 GLU 324 ASP 325 GLY 326 ARG 327 ASP 328 ASP 329 ASP 330 PHE 331 ASN 332 VAL 333 SER 334 MET 335 LYS 336 ASN 337 ALA 338 PHE 339 LYS 340 LEU 341 HIS 342 ASN 343 LYS 344 GLU 345 THR 346 GLU 347 GLU 348 VAL 349 HIS 350 LEU 351 PHE 352 PHE 353 ALA 354 LYS 355 LYS 356 LEU 357 GLU 358 GLU 359 LYS 360 ILE 361 ARG 362 TRP 363 LEU 364 ARG 365 ALA 366 PHE 367 ARG 368 GLU 369 GLU 370 ARG 371 LYS 372 MET 373 VAL 374 GLN 375 GLU 376 ASP 377 GLU 378 LYS 379 ILE 380 GLY 381 PHE 382 GLU 383 ILE 384 SER 385 GLU 386 ASN 387 GLN 388 LYS 389 ARG 390 GLN 391 ALA 392 ALA 393 MET 394 THR 395 VAL 396 ARG 397 LYS 398 ALA 399 SER 400 LYS 401
Unit 2	MET 1 GLN 2 THR 3 ILE 4 LYS 5 CYS 6 VAL 7 VAL 8 VAL 9 GLY 10 ASP 11 GLY 12 ALA 13 VAL 14 GLY 15 LYS 16 THR 17 CYS 18 LEU 19 LEU 20 ILE 21 SER 22 TYR 23 THR 24 THR 25 ASN 26 LYS 27 PHE 28 PRO 29 SER 30 GLU 31 TYR 32 VAL 33 PRO 34 THR 35 VAL 36 PHE 37 ASP 38 ASN 39 TYR 40 ALA 41 VAL 42 THR 43 VAL 44 MET 45 ILE 46 GLY 47 GLY 48 GLU 49 PRO 50 TYR 51 THR 52 LEU 53 GLY 54 LEU 55 PHE 56 ASP 57 THR 58 ALA 59 GLY 60 GLN 61 GLU 62 ASP 63 TYR 64 ASP 65 ARG 66 LEU 67 ARG 68 PRO 69 LEU 70 SER 71 TYR 72 PRO 73 GLN 74 THR 75 ASP 76 VAL 77 PHE 78 LEU 79 VAL 80 CYS 81 PHE 82 SER 83 VAL 84 VAL 85 SER 86 PRO 87 SER 88 SER 89 PHE 90 GLU 91 ASN 92 VAL 93 LYS 94 GLU 95 LYS 96 TRP 97 VAL 98 PRO 99 GLU 100 ILE 101 THR 102 HIS 103 HIS 104 CYS 105 PRO 106 LYS 107 THR 108 PRO 109 PHE 110 LEU 111 LEU 112 VAL 113 GLY 114 THR 115 GLN 116 ILE 117 ASP 118 LEU 119 ARG 120 ASP 121 ASP 122 PRO 123 SER 124 THR 125 ILE 126 GLU 127 LYS 128 LEU 129 ALA 130 LYS 131 ASN 132 LYS 133 GLN 134 LYS 135 PRO 136 ILE 137 THR 138 PRO 139 GLU 140 THR 141 ALA 142 GLU 143 LYS 144 LEU 145 ALA 146 ARG 147 ASP 148 LEU 149 LYS 150 ALA 151 VAL 152 LYS 153 TYR 154 VAL 155 GLU 156 CYS 157 SER 158 ALA 159 LEU 160 THR 161 GLN 162 LYS 163 GLY 164 LEU 165 LYS 166 ASN 167 VAL 168 PHE 169 ASP 170 GLU 171 ALA 172 ILE 173 LEU 174 ALA 175 ALA 176 LEU 177 GLU 178 PRO 179 LYS 184 SER 185 ARG 186 ARG 187 CYS 188 VAL 189 LEU 190 LEU 191
Unit 3	GLN 45 ASN 46 ARG 47 ASP 48 GLN 49 MET 50 ARG 51 ALA 52 ASN 53 VAL 54 ILE 55 ASN 56 GLU 57 ILE 58 MET 59 SER 60 THR 61 GLU 62 ARG 63 HIS 64 TYR 65 ILE 66 LYS 67 HIS 68 LEU 69 LYS 70 ASP 71 ILE 72 CYS 73 GLU 74 GLY 75 TYR 76 LEU 77 LYS 78 GLN 79 CYS 80 ARG 81 LYS 82 ARG 83 ARG 84 ASP 85 MET 86 PHE 87 SER 88 ASP 89 GLU 90 GLN 91 LEU 92 LYS 93 VAL 94 ILE 95 PHE 96 GLY 97 ASN 98 ILE 99 GLU 100 ASP 101 ILE 102 TYR 103 ARG 104 PHE 105 GLN 106 MET 107 GLY 108 PHE 109 VAL 110 ARG 111 ASP 112 LEU 113 GLU 114 LYS 115 GLN 116 TYR 117 ASN 118 ASN 119 ASP 120 ASP 121 PRO 122 HIS 123 LEU 124 SER 125 GLU 126 ILE 127 GLY 128 PRO 129 CYS 130 PHE 131 LEU 132 GLU 133 HIS 134 GLN 135 ASP 136 GLY 137 PHE 138 TRP 139 ILE 140 TYR 141 SER 142 GLU 143 TYR 144 CYS 145 ASN 146 ASN 147 HIS 148 LEU 149 ASP 150 ALA 151 CYS 152 MET 153 GLU 154 LEU 155 SER 156 LYS 157 LEU 158 MET 159 LYS 160 ASP 161 SER 162 ARG 163 TYR 164 GLN 165 HIS 166 PHE 167 PHE 168 GLU 169 ALA 170 CYS 171 ARG 172 LEU 173 LEU 174 GLN 175 GLN 176 MET 177 ILE 178 ASP 179 ILE 180 ALA 181 ILE 182 ASP 183 GLY 184 PHE 185 LEU 186 LEU 187 THR 188 PRO 189 VAL 190 GLN 191 LYS 192 ILE 193 CYS 194 LYS 195 TYR 196 PRO 197 LEU 198 GLN 199 LEU 200 ALA 201 GLU 202 LEU 203 LEU 204 LYS 205 TYR 206 THR 207 ALA 208 GLN 209 ASP 210 HIS 211 SER 212 ASP 213 TYR 214 ARG 215 TYR 216 VAL 217 ALA 218 ALA 219 ALA 220 LEU 221 ALA 222 VAL 223 MET 224 ARG 225 ASN 226 VAL 227 THR 228 GLN 229 GLN 230 ILE 231 ASN 232 GLU 233 ARG 234 LYS 235 ARG 236 ARG 237 LEU 238 GLU 239 ASN 240 ILE 241 ASP 242 LYS 243 ILE 244 ALA 245 GLN 246 TRP 247 GLN 248 ALA 249 SER 250 VAL 251 LEU 252 ASP 253 TRP 254 GLU 255 GLY 256 ASP 257 ASP 258 ILE 259 LEU 260 ASP 261 ARG 262 SER 263 SER 264 GLU 265 LEU 266 ILE 267 TYR 268 THR 269 GLY 270 GLU 271 MET 272 ALA 273 TRP 274 ILE 275 TYR 276 GLN 277 PRO 278 TYR 279 GLY 280 ARG 281 ASN 282 GLN 283 GLN 284 ARG 285 VAL 286 PHE 287 PHE 288 LEU 289 PHE 290 ASP 291 HIS 292 GLN 293 MET 294 VAL 295 LEU 296 CYS 297 LYS 298 LYS 299 ASP 300 LEU 301 ILE 302 ARG 303 ARG 304 ASP 305 ILE 306 LEU 307 TYR 308 TYR 309 LYS 310 GLY 311 ARG 312 ILE 313 ASP 314 MET 315 ASP 316 LYS 317 TYR 318 GLU 319 VAL 320 ILE 321 ASP 322 ILE 323 GLU 324 ASP 325 GLY 326 ARG 327 ASP 328 ASP 329 ASP 330 PHE 331 ASN 332 VAL 333 SER 334 MET 335 LYS 336 ASN 337 ALA 338 PHE 339 LYS 340 LEU 341 HIS 342 ASN 343 LYS 344 GLU 345 THR 346 GLU 347 GLU 348 VAL 349 HIS 350 LEU 351 PHE 352 PHE 353 ALA 354 LYS 355 LYS 356 LEU 357 GLU 358 GLU 359 LYS 360 ILE 361 ARG 362 TRP 363 LEU 364 ARG 365 ALA 366 PHE 367 ARG 368 GLU 369 GLU 370 ARG 371 LYS 372 MET 373 VAL 374 GLN 375 GLU 376 ASP 377 GLU 378 LYS 379 ILE 380 GLY 381 PHE 382 GLU 383 ILE 384 SER 385 GLU 386 ASN 387 GLN 388 LYS 389 ARG 390 GLN 391 ALA 392 ALA 393 MET 394 THR 395 VAL 396 ARG 397
Unit 4	GLY -2 SER -1 HIS 0 MET 1 GLN 2 THR 3 ILE 4 LYS 5 CYS 6 VAL 7 VAL 8 VAL 9 GLY 10 ASP 11 GLY 12 ALA 13 VAL 14 GLY 15 LYS 16 THR 17 CYS 18 LEU 19 LEU 20 ILE 21 SER 22 TYR 23 THR 24 THR 25 ASN 26 LYS 27 PHE 28 PRO 29 SER 30 GLU 31 TYR 32 VAL 33 PRO 34 THR 35 VAL 36 PHE 37 ASP 38 ASN 39 TYR 40 ALA 41 VAL 42 THR 43 VAL 44 MET 45 ILE 46 GLY 47 GLY 48 GLU 49 PRO 50 TYR 51 THR 52 LEU 53 GLY 54 LEU 55 PHE 56 ASP 57 THR 58 ALA 59 GLY 60 GLN 61 GLU 62 ASP 63 TYR 64 ASP 65 ARG 66 LEU 67 ARG 68 PRO 69 LEU 70 SER 71 TYR 72 PRO 73 GLN 74 THR 75 ASP 76 VAL 77 PHE 78 LEU 79 VAL 80 CYS 81 PHE 82 SER 83 VAL 84 VAL 85 SER 86 PRO 87 SER 88 SER 89 PHE 90 GLU 91 ASN 92 VAL 93 LYS 94 GLU 95 LYS 96 TRP 97 VAL 98 PRO 99 GLU 100 ILE 101 THR 102 HIS 103 HIS 104 CYS 105 PRO 106 LYS 107 THR 108 PRO 109 PHE 110 LEU 111 LEU 112 VAL 113 GLY 114 THR 115 GLN 116 ILE 117 ASP 118 LEU 119 ARG 120 ASP 121 ASP 122 PRO 123 SER 124 THR 125 ILE 126 GLU 127 LYS 128 LEU 129 ALA 130 LYS 131 ASN 132 LYS 133 GLN 134 LYS 135 PRO 136 ILE 137 THR 138 PRO 139 GLU 140 THR 141 ALA 142 GLU 143 LYS 144 LEU 145 ALA 146 ARG 147 ASP 148 LEU 149 LYS 150 ALA 151 VAL 152 LYS 153 TYR 154 VAL 155 GLU 156 CYS 157 SER 158 ALA 159 LEU 160 THR 161 GLN 162 LYS 163 GLY 164 LEU 165 LYS 166 ASN 167 VAL 168 PHE 169 ASP 170 GLU 171 ALA 172 ILE 173 LEU 174 ALA 175 ALA 176 LEU 177 GLU 178 PRO 179 SER 185 ARG 186 ARG 187 CYS 188 VAL 189 LEU 190 LEU 191

Ligands

Unit 5	GOL 601 GOL 602 GOL 606
Unit 6	GOL 603 SO4 702
Unit 7	GOL 604 GOL 605 SO4 701