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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE COLICIN E9, MUTANT HIS103ALA, IN COMPLEX WITH ZN+2 AND DSDNA (RESOLUTION 2.4A)
Keywords HOMING ENDONUCLEASES, COLICIN, HNH MOTIF, BETA-BETA-ALPHA ME MOTIF, HYDROLASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1V15     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   COLICIN E9  A 106 828 0
2  Protein   COLICIN E9  B 134 1058 0
3  Protein   COLICIN E9  C 129 1017 0
4  Protein   COLICIN E9  D 133 1050 0
5  Other macromolecule   5'-D(*GP*CP*GP*AP*TP*CP*GP*CP)-3'  E 7 139 0
6  Other macromolecule   5'-D(*GP*CP*GP*AP*TP*CP*GP*CP)-3'  F 8 161 0
7  Other macromolecule   5'-D(*GP*CP*GP*AP*TP*CP*GP*CP)-3'  G 6 123 0
8  Other macromolecule   5'-D(*GP*CP*GP*AP*TP*CP*GP*CP)-3'  H 8 161 0
9  Other macromolecule   5'-D(*GP*CP*GP*AP*TP*CP*GP*CP)-3'  I 7 139 0
10  Other macromolecule   5'-D(*GP*CP*GP*AP*TP*CP*GP*CP)-3'  J 8 161 0
11  Other macromolecule   5'-D(*GP*CP*GP*AP*TP*CP*GP*CP)-3'  K 6 123 0
12  Other macromolecule   5'-D(*GP*CP*GP*AP*TP*CP*GP*CP)-3'  L 8 161 0
13  Ligand   COLICIN E9  A 1 0 1
14  Ligand   COLICIN E9  B 1 0 1
15  Ligand   COLICIN E9  C 1 0 1
16  Ligand   COLICIN E9  D 1 0 1
17  Ligand   5'-D(*GP*CP*GP*AP*TP*CP*GP*CP)-3'  E 1 0 1
18  Ligand   5'-D(*GP*CP*GP*AP*TP*CP*GP*CP)-3'  G 1 0 1
19  Ligand   5'-D(*GP*CP*GP*AP*TP*CP*GP*CP)-3'  I 1 0 1
20  Ligand   5'-D(*GP*CP*GP*AP*TP*CP*GP*CP)-3'  K 1 0 1
21 Water     132 0 132
total       700 5121 140

Proteins
Unit 1 SER3 LYS4 ARG5 ASN6 LYS7 PRO8 GLY9 LYS10 ALA11 THR12 GLY13 LYS14 GLY15 LYS16 PRO17 VAL18 GLY19 ASP20 LYS21 TRP22 LEU23 ASP24 ASP25 ALA26 GLY27 LYS28 ASP29 SER30 GLY31 ALA32 PRO33 ILE34 LYS48 SER49 PHE50 ASP51 ASP52 PHE53 ARG54 LYS55 ALA56 VAL57 TRP58 GLU59 GLU60 VAL61 SER62 LYS63 ASP64 PRO65 LYS76 SER77 SER78 VAL79 SER80 LYS81 GLY82 TYR83 SER84 PRO85 PHE86 THR87 PRO88 LYS89 ASN90 GLN91 GLN92 VAL93 GLY94 GLY95 ARG96 LYS97 VAL98 TYR99 GLU100 LEU101 HIS102 ALA103 ASP104 LYS105 PRO106 ILE107 SER108 GLN109 GLY110 GLY111 GLU112 VAL113 TYR114 ASP115 MET116 ASP117 ASN118 ILE119 ARG120 VAL121 THR122 THR123 PRO124 LYS125 ARG126 HIS127 ILE128 ASP129 ILE130 HIS131
Unit 2 MET1 GLU2 SER3 LYS4 ARG5 ASN6 LYS7 PRO8 GLY9 LYS10 ALA11 THR12 GLY13 LYS14 GLY15 LYS16 PRO17 VAL18 GLY19 ASP20 LYS21 TRP22 LEU23 ASP24 ASP25 ALA26 GLY27 LYS28 ASP29 SER30 GLY31 ALA32 PRO33 ILE34 PRO35 ASP36 ARG37 ILE38 ALA39 ASP40 LYS41 LEU42 ARG43 ASP44 LYS45 GLU46 PHE47 LYS48 SER49 PHE50 ASP51 ASP52 PHE53 ARG54 LYS55 ALA56 VAL57 TRP58 GLU59 GLU60 VAL61 SER62 LYS63 ASP64 PRO65 GLU66 LEU67 SER68 LYS69 ASN70 LEU71 ASN72 PRO73 SER74 ASN75 LYS76 SER77 SER78 VAL79 SER80 LYS81 GLY82 TYR83 SER84 PRO85 PHE86 THR87 PRO88 LYS89 ASN90 GLN91 GLN92 VAL93 GLY94 GLY95 ARG96 LYS97 VAL98 TYR99 GLU100 LEU101 HIS102 ALA103 ASP104 LYS105 PRO106 ILE107 SER108 GLN109 GLY110 GLY111 GLU112 VAL113 TYR114 ASP115 MET116 ASP117 ASN118 ILE119 ARG120 VAL121 THR122 THR123 PRO124 LYS125 ARG126 HIS127 ILE128 ASP129 ILE130 HIS131 ARG132 GLY133 LYS134
Unit 3 SER3 LYS4 ARG5 ASN6 LYS7 PRO8 GLY9 LYS10 ALA11 THR12 GLY13 LYS14 GLY15 LYS16 PRO17 VAL18 GLY19 ASP20 LYS21 TRP22 LEU23 ASP24 ASP25 ALA26 GLY27 LYS28 ASP29 SER30 GLY31 ALA32 PRO33 ILE34 PRO35 ASP36 ARG37 ILE38 ALA39 ASP40 LYS41 LEU42 ARG43 ASP44 LYS45 GLU46 PHE47 LYS48 SER49 PHE50 ASP51 ASP52 PHE53 ARG54 LYS55 ALA56 VAL57 TRP58 GLU59 GLU60 VAL61 SER62 LYS63 ASP64 PRO65 GLU66 LEU67 SER68 LYS69 ASN70 LEU71 ASN72 PRO73 SER74 ASN75 LYS76 SER77 SER78 VAL79 SER80 LYS81 GLY82 TYR83 SER84 PRO85 PHE86 THR87 PRO88 LYS89 ASN90 GLN91 GLN92 VAL93 GLY94 GLY95 ARG96 LYS97 VAL98 TYR99 GLU100 LEU101 HIS102 ALA103 ASP104 LYS105 PRO106 ILE107 SER108 GLN109 GLY110 GLY111 GLU112 VAL113 TYR114 ASP115 MET116 ASP117 ASN118 ILE119 ARG120 VAL121 THR122 THR123 PRO124 LYS125 ARG126 HIS127 ILE128 ASP129 ILE130 HIS131
Unit 4 GLU2 SER3 LYS4 ARG5 ASN6 LYS7 PRO8 GLY9 LYS10 ALA11 THR12 GLY13 LYS14 GLY15 LYS16 PRO17 VAL18 GLY19 ASP20 LYS21 TRP22 LEU23 ASP24 ASP25 ALA26 GLY27 LYS28 ASP29 SER30 GLY31 ALA32 PRO33 ILE34 PRO35 ASP36 ARG37 ILE38 ALA39 ASP40 LYS41 LEU42 ARG43 ASP44 LYS45 GLU46 PHE47 LYS48 SER49 PHE50 ASP51 ASP52 PHE53 ARG54 LYS55 ALA56 VAL57 TRP58 GLU59 GLU60 VAL61 SER62 LYS63 ASP64 PRO65 GLU66 LEU67 SER68 LYS69 ASN70 LEU71 ASN72 PRO73 SER74 ASN75 LYS76 SER77 SER78 VAL79 SER80 LYS81 GLY82 TYR83 SER84 PRO85 PHE86 THR87 PRO88 LYS89 ASN90 GLN91 GLN92 VAL93 GLY94 GLY95 ARG96 LYS97 VAL98 TYR99 GLU100 LEU101 HIS102 ALA103 ASP104 LYS105 PRO106 ILE107 SER108 GLN109 GLY110 GLY111 GLU112 VAL113 TYR114 ASP115 MET116 ASP117 ASN118 ILE119 ARG120 VAL121 THR122 THR123 PRO124 LYS125 ARG126 HIS127 ILE128 ASP129 ILE130 HIS131 ARG132 GLY133 LYS134

Other macromolecules
Unit 5 DC2 DG3 DA4 DT5 DC6 DG7 DC8
Unit 6 DG9 DC10 DG11 DA12 DT13 DC14 DG15 DC16
Unit 7 DG3 DA4 DT5 DC6 DG7 DC8
Unit 8 DG9 DC10 DG11 DA12 DT13 DC14 DG15 DC16
Unit 9 DC2 DG3 DA4 DT5 DC6 DG7 DC8
Unit 10 DG9 DC10 DG11 DA12 DT13 DC14 DG15 DC16
Unit 11 DG3 DA4 DT5 DC6 DG7 DC8
Unit 12 DG9 DC10 DG11 DA12 DT13 DC14 DG15 DC16

Ligands
Unit 13 ZN1132
Unit 14 ZN1135
Unit 15 ZN1132
Unit 16 ZN1135
Unit 17 ZN1009
Unit 18 ZN1009
Unit 19 ZN1009
Unit 20 ZN1009

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany