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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTALS OF PEPTIDE DEFORMYLASE FROM PLASMODIUM FALCIPARUM WITH TEN SUBUNITS PER ASYMMETRIC UNIT REVEAL CRITICAL CHARACTERISTICS OF THE ACTIVE SITE FOR DRUG DESIGN
Keywords HYDROLASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1RQC     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   FORMYLMETHIONINE DEFORMYLASE  A 178 1454 24
2  Protein   FORMYLMETHIONINE DEFORMYLASE  B 178 1454 24
3  Protein   FORMYLMETHIONINE DEFORMYLASE  C 168 1369 24
4  Protein   FORMYLMETHIONINE DEFORMYLASE  D 173 1410 24
5  Protein   FORMYLMETHIONINE DEFORMYLASE  E 175 1425 24
6  Protein   FORMYLMETHIONINE DEFORMYLASE  F 172 1401 24
7  Protein   FORMYLMETHIONINE DEFORMYLASE  G 171 1392 24
8  Protein   FORMYLMETHIONINE DEFORMYLASE  H 173 1410 24
9  Protein   FORMYLMETHIONINE DEFORMYLASE  I 171 1392 24
10  Protein   FORMYLMETHIONINE DEFORMYLASE  J 171 1392 24
11  Ligand   FORMYLMETHIONINE DEFORMYLASE  A 1 0 1
12  Ligand   FORMYLMETHIONINE DEFORMYLASE  B 1 0 1
13  Ligand   FORMYLMETHIONINE DEFORMYLASE  C 1 0 1
14  Ligand   FORMYLMETHIONINE DEFORMYLASE  D 1 0 1
15  Ligand   FORMYLMETHIONINE DEFORMYLASE  E 1 0 1
16  Ligand   FORMYLMETHIONINE DEFORMYLASE  F 1 0 1
17  Ligand   FORMYLMETHIONINE DEFORMYLASE  G 1 0 1
18  Ligand   FORMYLMETHIONINE DEFORMYLASE  H 1 0 1
19  Ligand   FORMYLMETHIONINE DEFORMYLASE  I 1 0 1
20  Ligand   FORMYLMETHIONINE DEFORMYLASE  J 1 0 1
21 Water     149 0 149
total       1889 14099 399

Proteins
Unit 1 LYS66 ILE67 VAL68 LYS69 TYR70 PRO71 ASP72 PRO73 ILE74 LEU75 ARG76 ARG77 ARG78 SER79 GLU80 GLU81 VAL82 THR83 ASN84 PHE85 ASP86 ASP87 ASN88 LEU89 LYS90 ARG91 VAL92 VAL93 ARG94 LYS95 MSE96 PHE97 ASP98 ILE99 MSE100 TYR101 GLU102 SER103 LYS104 GLY105 ILE106 GLY107 LEU108 SER109 ALA110 PRO111 GLN112 VAL113 ASN114 ILE115 SER116 LYS117 ARG118 ILE119 ILE120 VAL121 TRP122 ASN123 ALA124 LEU125 TYR126 GLU127 LYS128 ARG129 LYS130 GLU131 GLU132 ASN133 GLU134 ARG135 ILE136 PHE137 ILE138 ASN139 PRO140 SER141 ILE142 VAL143 GLU144 GLN145 SER146 LEU147 VAL148 LYS149 LEU150 LYS151 LEU152 ILE153 GLU154 GLY155 CYS156 LEU157 SER158 PHE159 PRO160 GLY161 ILE162 GLU163 GLY164 LYS165 VAL166 GLU167 ARG168 PRO169 SER170 ILE171 VAL172 SER173 ILE174 SER175 TYR176 TYR177 ASP178 ILE179 ASN180 GLY181 TYR182 LYS183 HIS184 LEU185 LYS186 ILE187 LEU188 LYS189 GLY190 ILE191 HIS192 SER193 ARG194 ILE195 PHE196 GLN197 HIS198 GLU199 PHE200 ASP201 HIS202 LEU203 ASN204 GLY205 THR206 LEU207 PHE208 ILE209 ASP210 LYS211 MSE212 THR213 GLN214 VAL215 ASP216 LYS217 LYS218 LYS219 VAL220 ARG221 PRO222 LYS223 LEU224 ASN225 GLU226 LEU227 ILE228 ARG229 ASP230 TYR231 LYS232 ALA233 THR234 HIS235 SER236 GLU237 GLU238 PRO239 LEU240 GLU241 HIS242 HIS243
Unit 2 LYS66 ILE67 VAL68 LYS69 TYR70 PRO71 ASP72 PRO73 ILE74 LEU75 ARG76 ARG77 ARG78 SER79 GLU80 GLU81 VAL82 THR83 ASN84 PHE85 ASP86 ASP87 ASN88 LEU89 LYS90 ARG91 VAL92 VAL93 ARG94 LYS95 MSE96 PHE97 ASP98 ILE99 MSE100 TYR101 GLU102 SER103 LYS104 GLY105 ILE106 GLY107 LEU108 SER109 ALA110 PRO111 GLN112 VAL113 ASN114 ILE115 SER116 LYS117 ARG118 ILE119 ILE120 VAL121 TRP122 ASN123 ALA124 LEU125 TYR126 GLU127 LYS128 ARG129 LYS130 GLU131 GLU132 ASN133 GLU134 ARG135 ILE136 PHE137 ILE138 ASN139 PRO140 SER141 ILE142 VAL143 GLU144 GLN145 SER146 LEU147 VAL148 LYS149 LEU150 LYS151 LEU152 ILE153 GLU154 GLY155 CYS156 LEU157 SER158 PHE159 PRO160 GLY161 ILE162 GLU163 GLY164 LYS165 VAL166 GLU167 ARG168 PRO169 SER170 ILE171 VAL172 SER173 ILE174 SER175 TYR176 TYR177 ASP178 ILE179 ASN180 GLY181 TYR182 LYS183 HIS184 LEU185 LYS186 ILE187 LEU188 LYS189 GLY190 ILE191 HIS192 SER193 ARG194 ILE195 PHE196 GLN197 HIS198 GLU199 PHE200 ASP201 HIS202 LEU203 ASN204 GLY205 THR206 LEU207 PHE208 ILE209 ASP210 LYS211 MSE212 THR213 GLN214 VAL215 ASP216 LYS217 LYS218 LYS219 VAL220 ARG221 PRO222 LYS223 LEU224 ASN225 GLU226 LEU227 ILE228 ARG229 ASP230 TYR231 LYS232 ALA233 THR234 HIS235 SER236 GLU237 GLU238 PRO239 LEU240 GLU241 HIS242 HIS243
Unit 3 LYS66 ILE67 VAL68 LYS69 TYR70 PRO71 ASP72 PRO73 ILE74 LEU75 ARG76 ARG77 ARG78 SER79 GLU80 GLU81 VAL82 THR83 ASN84 PHE85 ASP86 ASP87 ASN88 LEU89 LYS90 ARG91 VAL92 VAL93 ARG94 LYS95 MSE96 PHE97 ASP98 ILE99 MSE100 TYR101 GLU102 SER103 LYS104 GLY105 ILE106 GLY107 LEU108 SER109 ALA110 PRO111 GLN112 VAL113 ASN114 ILE115 SER116 LYS117 ARG118 ILE119 ILE120 VAL121 TRP122 ASN123 ALA124 LEU125 TYR126 GLU127 LYS128 ARG129 LYS130 GLU131 GLU132 ASN133 GLU134 ARG135 ILE136 PHE137 ILE138 ASN139 PRO140 SER141 ILE142 VAL143 GLU144 GLN145 SER146 LEU147 VAL148 LYS149 LEU150 LYS151 LEU152 ILE153 GLU154 GLY155 CYS156 LEU157 SER158 PHE159 PRO160 GLY161 ILE162 GLU163 GLY164 LYS165 VAL166 GLU167 ARG168 PRO169 SER170 ILE171 VAL172 SER173 ILE174 SER175 TYR176 TYR177 ASP178 ILE179 ASN180 GLY181 TYR182 LYS183 HIS184 LEU185 LYS186 ILE187 LEU188 LYS189 GLY190 ILE191 HIS192 SER193 ARG194 ILE195 PHE196 GLN197 HIS198 GLU199 PHE200 ASP201 HIS202 LEU203 ASN204 GLY205 THR206 LEU207 PHE208 ILE209 ASP210 LYS211 MSE212 THR213 GLN214 VAL215 ASP216 LYS217 LYS218 LYS219 VAL220 ARG221 PRO222 LYS223 LEU224 ASN225 GLU226 LEU227 ILE228 ARG229 ASP230 TYR231 LYS232 ALA233
Unit 4 LYS66 ILE67 VAL68 LYS69 TYR70 PRO71 ASP72 PRO73 ILE74 LEU75 ARG76 ARG77 ARG78 SER79 GLU80 GLU81 VAL82 THR83 ASN84 PHE85 ASP86 ASP87 ASN88 LEU89 LYS90 ARG91 VAL92 VAL93 ARG94 LYS95 MSE96 PHE97 ASP98 ILE99 MSE100 TYR101 GLU102 SER103 LYS104 GLY105 ILE106 GLY107 LEU108 SER109 ALA110 PRO111 GLN112 VAL113 ASN114 ILE115 SER116 LYS117 ARG118 ILE119 ILE120 VAL121 TRP122 ASN123 ALA124 LEU125 TYR126 GLU127 LYS128 ARG129 LYS130 GLU131 GLU132 ASN133 GLU134 ARG135 ILE136 PHE137 ILE138 ASN139 PRO140 SER141 ILE142 VAL143 GLU144 GLN145 SER146 LEU147 VAL148 LYS149 LEU150 LYS151 LEU152 ILE153 GLU154 GLY155 CYS156 LEU157 SER158 PHE159 PRO160 GLY161 ILE162 GLU163 GLY164 LYS165 VAL166 GLU167 ARG168 PRO169 SER170 ILE171 VAL172 SER173 ILE174 SER175 TYR176 TYR177 ASP178 ILE179 ASN180 GLY181 TYR182 LYS183 HIS184 LEU185 LYS186 ILE187 LEU188 LYS189 GLY190 ILE191 HIS192 SER193 ARG194 ILE195 PHE196 GLN197 HIS198 GLU199 PHE200 ASP201 HIS202 LEU203 ASN204 GLY205 THR206 LEU207 PHE208 ILE209 ASP210 LYS211 MSE212 THR213 GLN214 VAL215 ASP216 LYS217 LYS218 LYS219 VAL220 ARG221 PRO222 LYS223 LEU224 ASN225 GLU226 LEU227 ILE228 ARG229 ASP230 TYR231 LYS232 ALA233 THR234 HIS235 SER236 GLU237 GLU238
Unit 5 LYS66 ILE67 VAL68 LYS69 TYR70 PRO71 ASP72 PRO73 ILE74 LEU75 ARG76 ARG77 ARG78 SER79 GLU80 GLU81 VAL82 THR83 ASN84 PHE85 ASP86 ASP87 ASN88 LEU89 LYS90 ARG91 VAL92 VAL93 ARG94 LYS95 MSE96 PHE97 ASP98 ILE99 MSE100 TYR101 GLU102 SER103 LYS104 GLY105 ILE106 GLY107 LEU108 SER109 ALA110 PRO111 GLN112 VAL113 ASN114 ILE115 SER116 LYS117 ARG118 ILE119 ILE120 VAL121 TRP122 ASN123 ALA124 LEU125 TYR126 GLU127 LYS128 ARG129 LYS130 GLU131 GLU132 ASN133 GLU134 ARG135 ILE136 PHE137 ILE138 ASN139 PRO140 SER141 ILE142 VAL143 GLU144 GLN145 SER146 LEU147 VAL148 LYS149 LEU150 LYS151 LEU152 ILE153 GLU154 GLY155 CYS156 LEU157 SER158 PHE159 PRO160 GLY161 ILE162 GLU163 GLY164 LYS165 VAL166 GLU167 ARG168 PRO169 SER170 ILE171 VAL172 SER173 ILE174 SER175 TYR176 TYR177 ASP178 ILE179 ASN180 GLY181 TYR182 LYS183 HIS184 LEU185 LYS186 ILE187 LEU188 LYS189 GLY190 ILE191 HIS192 SER193 ARG194 ILE195 PHE196 GLN197 HIS198 GLU199 PHE200 ASP201 HIS202 LEU203 ASN204 GLY205 THR206 LEU207 PHE208 ILE209 ASP210 LYS211 MSE212 THR213 GLN214 VAL215 ASP216 LYS217 LYS218 LYS219 VAL220 ARG221 PRO222 LYS223 LEU224 ASN225 GLU226 LEU227 ILE228 ARG229 ASP230 TYR231 LYS232 ALA233 THR234 HIS235 SER236 GLU237 GLU238 PRO239 LEU240
Unit 6 LYS66 ILE67 VAL68 LYS69 TYR70 PRO71 ASP72 PRO73 ILE74 LEU75 ARG76 ARG77 ARG78 SER79 GLU80 GLU81 VAL82 THR83 ASN84 PHE85 ASP86 ASP87 ASN88 LEU89 LYS90 ARG91 VAL92 VAL93 ARG94 LYS95 MSE96 PHE97 ASP98 ILE99 MSE100 TYR101 GLU102 SER103 LYS104 GLY105 ILE106 GLY107 LEU108 SER109 ALA110 PRO111 GLN112 VAL113 ASN114 ILE115 SER116 LYS117 ARG118 ILE119 ILE120 VAL121 TRP122 ASN123 ALA124 LEU125 TYR126 GLU127 LYS128 ARG129 LYS130 GLU131 GLU132 ASN133 GLU134 ARG135 ILE136 PHE137 ILE138 ASN139 PRO140 SER141 ILE142 VAL143 GLU144 GLN145 SER146 LEU147 VAL148 LYS149 LEU150 LYS151 LEU152 ILE153 GLU154 GLY155 CYS156 LEU157 SER158 PHE159 PRO160 GLY161 ILE162 GLU163 GLY164 LYS165 VAL166 GLU167 ARG168 PRO169 SER170 ILE171 VAL172 SER173 ILE174 SER175 TYR176 TYR177 ASP178 ILE179 ASN180 GLY181 TYR182 LYS183 HIS184 LEU185 LYS186 ILE187 LEU188 LYS189 GLY190 ILE191 HIS192 SER193 ARG194 ILE195 PHE196 GLN197 HIS198 GLU199 PHE200 ASP201 HIS202 LEU203 ASN204 GLY205 THR206 LEU207 PHE208 ILE209 ASP210 LYS211 MSE212 THR213 GLN214 VAL215 ASP216 LYS217 LYS218 LYS219 VAL220 ARG221 PRO222 LYS223 LEU224 ASN225 GLU226 LEU227 ILE228 ARG229 ASP230 TYR231 LYS232 ALA233 THR234 HIS235 SER236 GLU237
Unit 7 LYS66 ILE67 VAL68 LYS69 TYR70 PRO71 ASP72 PRO73 ILE74 LEU75 ARG76 ARG77 ARG78 SER79 GLU80 GLU81 VAL82 THR83 ASN84 PHE85 ASP86 ASP87 ASN88 LEU89 LYS90 ARG91 VAL92 VAL93 ARG94 LYS95 MSE96 PHE97 ASP98 ILE99 MSE100 TYR101 GLU102 SER103 LYS104 GLY105 ILE106 GLY107 LEU108 SER109 ALA110 PRO111 GLN112 VAL113 ASN114 ILE115 SER116 LYS117 ARG118 ILE119 ILE120 VAL121 TRP122 ASN123 ALA124 LEU125 TYR126 GLU127 LYS128 ARG129 LYS130 GLU131 GLU132 ASN133 GLU134 ARG135 ILE136 PHE137 ILE138 ASN139 PRO140 SER141 ILE142 VAL143 GLU144 GLN145 SER146 LEU147 VAL148 LYS149 LEU150 LYS151 LEU152 ILE153 GLU154 GLY155 CYS156 LEU157 SER158 PHE159 PRO160 GLY161 ILE162 GLU163 GLY164 LYS165 VAL166 GLU167 ARG168 PRO169 SER170 ILE171 VAL172 SER173 ILE174 SER175 TYR176 TYR177 ASP178 ILE179 ASN180 GLY181 TYR182 LYS183 HIS184 LEU185 LYS186 ILE187 LEU188 LYS189 GLY190 ILE191 HIS192 SER193 ARG194 ILE195 PHE196 GLN197 HIS198 GLU199 PHE200 ASP201 HIS202 LEU203 ASN204 GLY205 THR206 LEU207 PHE208 ILE209 ASP210 LYS211 MSE212 THR213 GLN214 VAL215 ASP216 LYS217 LYS218 LYS219 VAL220 ARG221 PRO222 LYS223 LEU224 ASN225 GLU226 LEU227 ILE228 ARG229 ASP230 TYR231 LYS232 ALA233 THR234 HIS235 SER236
Unit 8 LYS66 ILE67 VAL68 LYS69 TYR70 PRO71 ASP72 PRO73 ILE74 LEU75 ARG76 ARG77 ARG78 SER79 GLU80 GLU81 VAL82 THR83 ASN84 PHE85 ASP86 ASP87 ASN88 LEU89 LYS90 ARG91 VAL92 VAL93 ARG94 LYS95 MSE96 PHE97 ASP98 ILE99 MSE100 TYR101 GLU102 SER103 LYS104 GLY105 ILE106 GLY107 LEU108 SER109 ALA110 PRO111 GLN112 VAL113 ASN114 ILE115 SER116 LYS117 ARG118 ILE119 ILE120 VAL121 TRP122 ASN123 ALA124 LEU125 TYR126 GLU127 LYS128 ARG129 LYS130 GLU131 GLU132 ASN133 GLU134 ARG135 ILE136 PHE137 ILE138 ASN139 PRO140 SER141 ILE142 VAL143 GLU144 GLN145 SER146 LEU147 VAL148 LYS149 LEU150 LYS151 LEU152 ILE153 GLU154 GLY155 CYS156 LEU157 SER158 PHE159 PRO160 GLY161 ILE162 GLU163 GLY164 LYS165 VAL166 GLU167 ARG168 PRO169 SER170 ILE171 VAL172 SER173 ILE174 SER175 TYR176 TYR177 ASP178 ILE179 ASN180 GLY181 TYR182 LYS183 HIS184 LEU185 LYS186 ILE187 LEU188 LYS189 GLY190 ILE191 HIS192 SER193 ARG194 ILE195 PHE196 GLN197 HIS198 GLU199 PHE200 ASP201 HIS202 LEU203 ASN204 GLY205 THR206 LEU207 PHE208 ILE209 ASP210 LYS211 MSE212 THR213 GLN214 VAL215 ASP216 LYS217 LYS218 LYS219 VAL220 ARG221 PRO222 LYS223 LEU224 ASN225 GLU226 LEU227 ILE228 ARG229 ASP230 TYR231 LYS232 ALA233 THR234 HIS235 SER236 GLU237 GLU238
Unit 9 LYS66 ILE67 VAL68 LYS69 TYR70 PRO71 ASP72 PRO73 ILE74 LEU75 ARG76 ARG77 ARG78 SER79 GLU80 GLU81 VAL82 THR83 ASN84 PHE85 ASP86 ASP87 ASN88 LEU89 LYS90 ARG91 VAL92 VAL93 ARG94 LYS95 MSE96 PHE97 ASP98 ILE99 MSE100 TYR101 GLU102 SER103 LYS104 GLY105 ILE106 GLY107 LEU108 SER109 ALA110 PRO111 GLN112 VAL113 ASN114 ILE115 SER116 LYS117 ARG118 ILE119 ILE120 VAL121 TRP122 ASN123 ALA124 LEU125 TYR126 GLU127 LYS128 ARG129 LYS130 GLU131 GLU132 ASN133 GLU134 ARG135 ILE136 PHE137 ILE138 ASN139 PRO140 SER141 ILE142 VAL143 GLU144 GLN145 SER146 LEU147 VAL148 LYS149 LEU150 LYS151 LEU152 ILE153 GLU154 GLY155 CYS156 LEU157 SER158 PHE159 PRO160 GLY161 ILE162 GLU163 GLY164 LYS165 VAL166 GLU167 ARG168 PRO169 SER170 ILE171 VAL172 SER173 ILE174 SER175 TYR176 TYR177 ASP178 ILE179 ASN180 GLY181 TYR182 LYS183 HIS184 LEU185 LYS186 ILE187 LEU188 LYS189 GLY190 ILE191 HIS192 SER193 ARG194 ILE195 PHE196 GLN197 HIS198 GLU199 PHE200 ASP201 HIS202 LEU203 ASN204 GLY205 THR206 LEU207 PHE208 ILE209 ASP210 LYS211 MSE212 THR213 GLN214 VAL215 ASP216 LYS217 LYS218 LYS219 VAL220 ARG221 PRO222 LYS223 LEU224 ASN225 GLU226 LEU227 ILE228 ARG229 ASP230 TYR231 LYS232 ALA233 THR234 HIS235 SER236
Unit 10 LYS66 ILE67 VAL68 LYS69 TYR70 PRO71 ASP72 PRO73 ILE74 LEU75 ARG76 ARG77 ARG78 SER79 GLU80 GLU81 VAL82 THR83 ASN84 PHE85 ASP86 ASP87 ASN88 LEU89 LYS90 ARG91 VAL92 VAL93 ARG94 LYS95 MSE96 PHE97 ASP98 ILE99 MSE100 TYR101 GLU102 SER103 LYS104 GLY105 ILE106 GLY107 LEU108 SER109 ALA110 PRO111 GLN112 VAL113 ASN114 ILE115 SER116 LYS117 ARG118 ILE119 ILE120 VAL121 TRP122 ASN123 ALA124 LEU125 TYR126 GLU127 LYS128 ARG129 LYS130 GLU131 GLU132 ASN133 GLU134 ARG135 ILE136 PHE137 ILE138 ASN139 PRO140 SER141 ILE142 VAL143 GLU144 GLN145 SER146 LEU147 VAL148 LYS149 LEU150 LYS151 LEU152 ILE153 GLU154 GLY155 CYS156 LEU157 SER158 PHE159 PRO160 GLY161 ILE162 GLU163 GLY164 LYS165 VAL166 GLU167 ARG168 PRO169 SER170 ILE171 VAL172 SER173 ILE174 SER175 TYR176 TYR177 ASP178 ILE179 ASN180 GLY181 TYR182 LYS183 HIS184 LEU185 LYS186 ILE187 LEU188 LYS189 GLY190 ILE191 HIS192 SER193 ARG194 ILE195 PHE196 GLN197 HIS198 GLU199 PHE200 ASP201 HIS202 LEU203 ASN204 GLY205 THR206 LEU207 PHE208 ILE209 ASP210 LYS211 MSE212 THR213 GLN214 VAL215 ASP216 LYS217 LYS218 LYS219 VAL220 ARG221 PRO222 LYS223 LEU224 ASN225 GLU226 LEU227 ILE228 ARG229 ASP230 TYR231 LYS232 ALA233 THR234 HIS235 SER236

Ligands
Unit 11 CO301
Unit 12 CO311
Unit 13 CO321
Unit 14 CO331
Unit 15 CO341
Unit 16 CO351
Unit 17 CO361
Unit 18 CO371
Unit 19 CO381
Unit 20 CO391

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany