1Q1J - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE ANALYSIS OF ANTI-HIV-1 FAB 447-52D IN COMPLEX WITH V3 PEPTIDE
• Keywords: FAB-PEPTIDE COMPLEX, HIV-1, GP120, V3 LOOP, IMMUNE SYSTEM
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	1Q1J	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	FAB 447-52D, LIGHT CHAIN	L	215	1598	0
2	Protein	FAB 447-52D, HEAVY CHAIN	H	231	1740	0
3	Protein	GP120 V3 PEPTIDE	P	10	73	0
4	Protein	FAB 447-52D, LIGHT CHAIN	M	215	1598	0
5	Protein	FAB 447-52D, HEAVY CHAIN	I	231	1740	0
6	Protein	GP120 V3 PEPTIDE	Q	10	73	0
7	Water			53	0	53
total				965	6822	53

Proteins

Unit 1	GLN 1 SER 2 VAL 3 LEU 4 THR 5 GLN 6 PRO 7 PRO 8 SER 9 VAL 11 SER 12 ALA 13 ALA 14 PRO 15 GLY 16 GLN 17 LYS 18 VAL 19 THR 20 ILE 21 SER 22 CYS 23 SER 24 GLY 25 SER 26 SER 27 SER 27A ASN 27B ILE 28 GLY 29 ASN 30 ASN 31 TYR 32 VAL 33 LEU 34 TRP 35 TYR 36 GLN 37 GLN 38 PHE 39 PRO 40 GLY 41 THR 42 ALA 43 PRO 44 LYS 45 LEU 46 LEU 47 ILE 48 TYR 49 GLY 50 ASN 51 ASN 52 LYS 53 ARG 54 PRO 55 SER 56 GLY 57 ILE 58 PRO 59 ASP 60 ARG 61 PHE 62 SER 63 GLY 64 SER 65 LYS 66 SER 67 GLY 68 THR 69 SER 70 ALA 71 THR 72 LEU 73 GLY 74 ILE 75 THR 76 GLY 77 LEU 78 GLN 79 THR 80 GLY 81 ASP 82 GLU 83 ALA 84 ASP 85 TYR 86 PHE 87 CYS 88 ALA 89 THR 90 TRP 91 ASP 92 SER 93 GLY 94 LEU 95 SER 95A ALA 95B ASP 95C TRP 96 VAL 97 PHE 98 GLY 99 GLY 100 GLY 101 THR 102 LYS 103 LEU 104 THR 105 VAL 106 LEU 106A SER 107 GLN 108 PRO 109 LYS 110 ALA 111 ALA 112 PRO 113 SER 114 VAL 115 THR 116 LEU 117 PHE 118 PRO 119 PRO 120 SER 121 SER 122 GLU 123 GLU 124 LEU 125 GLN 126 ALA 127 ASN 128 LYS 129 ALA 130 THR 131 LEU 132 VAL 133 CYS 134 LEU 135 ILE 136 SER 137 ASP 138 PHE 139 TYR 140 PRO 141 GLY 142 ALA 143 VAL 144 THR 145 VAL 146 ALA 147 TRP 148 LYS 149 ALA 150 ASP 151 SER 152 SER 153 PRO 154 VAL 155 LYS 156 ALA 157 GLY 158 VAL 159 GLU 160 THR 161 THR 162 THR 163 PRO 164 SER 165 LYS 166 GLN 167 SER 168 ASN 170 ASN 171 LYS 172 TYR 173 ALA 174 ALA 175 SER 176 SER 177 TYR 178 LEU 179 SER 180 LEU 181 THR 182 PRO 183 GLU 184 GLN 185 TRP 186 LYS 187 SER 188 HIS 189 ARG 190 SER 191 TYR 192 SER 193 CYS 194 GLN 195 VAL 196 THR 197 HIS 198 GLU 199 GLY 200 SER 203 THR 204 VAL 205 GLU 206 LYS 207 THR 208 VAL 209 ALA 210 PRO 211 THR 212 GLU 213
Unit 2	GLU 1 VAL 2 GLN 3 LEU 4 VAL 5 GLU 6 SER 7 GLY 8 GLY 9 GLY 10 LEU 11 VAL 12 LYS 13 PRO 14 GLY 15 GLY 16 SER 17 LEU 18 ARG 19 LEU 20 THR 21 CYS 22 VAL 23 ALA 24 SER 25 GLY 26 PHE 27 THR 28 PHE 29 SER 30 ASP 31 VAL 32 TRP 33 LEU 34 ASN 35 TRP 36 VAL 37 ARG 38 GLN 39 ALA 40 PRO 41 GLY 42 LYS 43 GLY 44 LEU 45 GLU 46 TRP 47 VAL 48 GLY 49 ARG 50 ILE 51 LYS 52 SER 52A ARG 52B THR 52C ASP 53 GLY 54 GLY 55 THR 56 THR 57 ASP 58 TYR 59 ALA 60 ALA 61 SER 62 VAL 63 LYS 64 GLY 65 ARG 66 PHE 67 THR 68 ILE 69 SER 70 ARG 71 ASP 72 ASP 73 SER 74 LYS 75 ASN 76 THR 77 LEU 78 TYR 79 LEU 80 GLN 81 MET 82 ASN 82A SER 82B LEU 82C LYS 83 THR 84 GLU 85 ASP 86 THR 87 ALA 88 VAL 89 TYR 90 SER 91 CYS 92 THR 93 THR 94 ASP 95 GLY 96 PHE 97 ILE 98 MET 99 ILE 100 ARG 100A GLY 100B VAL 100C SER 100D GLU 100E ASP 100F TYR 100G TYR 100H TYR 100I TYR 100J TYR 100K MET 100L ASP 101 VAL 102 TRP 103 GLY 104 LYS 105 GLY 106 THR 107 THR 108 VAL 109 THR 110 VAL 111 SER 112 SER 113 ALA 114 SER 115 THR 116 LYS 117 GLY 118 PRO 119 SER 120 VAL 121 PHE 122 PRO 123 LEU 124 ALA 125 PRO 126 CYS 127 SER 128 ARG 129 SER 130 THR 133 SER 134 GLY 135 GLY 136 THR 137 ALA 138 ALA 139 LEU 140 GLY 141 CYS 142 LEU 143 VAL 144 LYS 145 ASP 146 TYR 147 PHE 148 PRO 149 GLU 150 PRO 151 VAL 152 THR 153 VAL 154 SER 156 TRP 157 ASN 162 SER 163 GLY 164 ALA 165 LEU 166 THR 167 SER 168 GLY 169 VAL 171 HIS 172 THR 173 PHE 174 PRO 175 ALA 176 VAL 177 LEU 178 GLN 179 SER 180 SER 182 GLY 183 LEU 184 TYR 185 SER 186 LEU 187 SER 188 SER 189 VAL 190 VAL 191 THR 192 VAL 193 PRO 194 SER 195 SER 196 SER 197 LEU 198 GLY 199 THR 200 GLN 203 THR 205 TYR 206 THR 207 CYS 208 ASN 209 VAL 210 ASN 211 HIS 212 LYS 213 PRO 214 SER 215 ASN 216 THR 217 LYS 218 VAL 219 ASP 220 LYS 221 ARG 222 VAL 223 GLU 226 LEU 227
Unit 3	LYS 305 ARG 306 ILE 307 HIS 308 ILE 309 GLY 312 PRO 313 GLY 314 ARG 315 ALA 316
Unit 4	GLN 1 SER 2 VAL 3 LEU 4 THR 5 GLN 6 PRO 7 PRO 8 SER 9 VAL 11 SER 12 ALA 13 ALA 14 PRO 15 GLY 16 GLN 17 LYS 18 VAL 19 THR 20 ILE 21 SER 22 CYS 23 SER 24 GLY 25 SER 26 SER 27 SER 27A ASN 27B ILE 28 GLY 29 ASN 30 ASN 31 TYR 32 VAL 33 LEU 34 TRP 35 TYR 36 GLN 37 GLN 38 PHE 39 PRO 40 GLY 41 THR 42 ALA 43 PRO 44 LYS 45 LEU 46 LEU 47 ILE 48 TYR 49 GLY 50 ASN 51 ASN 52 LYS 53 ARG 54 PRO 55 SER 56 GLY 57 ILE 58 PRO 59 ASP 60 ARG 61 PHE 62 SER 63 GLY 64 SER 65 LYS 66 SER 67 GLY 68 THR 69 SER 70 ALA 71 THR 72 LEU 73 GLY 74 ILE 75 THR 76 GLY 77 LEU 78 GLN 79 THR 80 GLY 81 ASP 82 GLU 83 ALA 84 ASP 85 TYR 86 PHE 87 CYS 88 ALA 89 THR 90 TRP 91 ASP 92 SER 93 GLY 94 LEU 95 SER 95A ALA 95B ASP 95C TRP 96 VAL 97 PHE 98 GLY 99 GLY 100 GLY 101 THR 102 LYS 103 LEU 104 THR 105 VAL 106 LEU 106A SER 107 GLN 108 PRO 109 LYS 110 ALA 111 ALA 112 PRO 113 SER 114 VAL 115 THR 116 LEU 117 PHE 118 PRO 119 PRO 120 SER 121 SER 122 GLU 123 GLU 124 LEU 125 GLN 126 ALA 127 ASN 128 LYS 129 ALA 130 THR 131 LEU 132 VAL 133 CYS 134 LEU 135 ILE 136 SER 137 ASP 138 PHE 139 TYR 140 PRO 141 GLY 142 ALA 143 VAL 144 THR 145 VAL 146 ALA 147 TRP 148 LYS 149 ALA 150 ASP 151 SER 152 SER 153 PRO 154 VAL 155 LYS 156 ALA 157 GLY 158 VAL 159 GLU 160 THR 161 THR 162 THR 163 PRO 164 SER 165 LYS 166 GLN 167 SER 168 ASN 170 ASN 171 LYS 172 TYR 173 ALA 174 ALA 175 SER 176 SER 177 TYR 178 LEU 179 SER 180 LEU 181 THR 182 PRO 183 GLU 184 GLN 185 TRP 186 LYS 187 SER 188 HIS 189 ARG 190 SER 191 TYR 192 SER 193 CYS 194 GLN 195 VAL 196 THR 197 HIS 198 GLU 199 GLY 200 SER 203 THR 204 VAL 205 GLU 206 LYS 207 THR 208 VAL 209 ALA 210 PRO 211 THR 212 GLU 213
Unit 5	GLU 1 VAL 2 GLN 3 LEU 4 VAL 5 GLU 6 SER 7 GLY 8 GLY 9 GLY 10 LEU 11 VAL 12 LYS 13 PRO 14 GLY 15 GLY 16 SER 17 LEU 18 ARG 19 LEU 20 THR 21 CYS 22 VAL 23 ALA 24 SER 25 GLY 26 PHE 27 THR 28 PHE 29 SER 30 ASP 31 VAL 32 TRP 33 LEU 34 ASN 35 TRP 36 VAL 37 ARG 38 GLN 39 ALA 40 PRO 41 GLY 42 LYS 43 GLY 44 LEU 45 GLU 46 TRP 47 VAL 48 GLY 49 ARG 50 ILE 51 LYS 52 SER 52A ARG 52B THR 52C ASP 53 GLY 54 GLY 55 THR 56 THR 57 ASP 58 TYR 59 ALA 60 ALA 61 SER 62 VAL 63 LYS 64 GLY 65 ARG 66 PHE 67 THR 68 ILE 69 SER 70 ARG 71 ASP 72 ASP 73 SER 74 LYS 75 ASN 76 THR 77 LEU 78 TYR 79 LEU 80 GLN 81 MET 82 ASN 82A SER 82B LEU 82C LYS 83 THR 84 GLU 85 ASP 86 THR 87 ALA 88 VAL 89 TYR 90 SER 91 CYS 92 THR 93 THR 94 ASP 95 GLY 96 PHE 97 ILE 98 MET 99 ILE 100 ARG 100A GLY 100B VAL 100C SER 100D GLU 100E ASP 100F TYR 100G TYR 100H TYR 100I TYR 100J TYR 100K MET 100L ASP 101 VAL 102 TRP 103 GLY 104 LYS 105 GLY 106 THR 107 THR 108 VAL 109 THR 110 VAL 111 SER 112 SER 113 ALA 114 SER 115 THR 116 LYS 117 GLY 118 PRO 119 SER 120 VAL 121 PHE 122 PRO 123 LEU 124 ALA 125 PRO 126 CYS 127 SER 128 ARG 129 SER 130 THR 133 SER 134 GLY 135 GLY 136 THR 137 ALA 138 ALA 139 LEU 140 GLY 141 CYS 142 LEU 143 VAL 144 LYS 145 ASP 146 TYR 147 PHE 148 PRO 149 GLU 150 PRO 151 VAL 152 THR 153 VAL 154 SER 156 TRP 157 ASN 162 SER 163 GLY 164 ALA 165 LEU 166 THR 167 SER 168 GLY 169 VAL 171 HIS 172 THR 173 PHE 174 PRO 175 ALA 176 VAL 177 LEU 178 GLN 179 SER 180 SER 182 GLY 183 LEU 184 TYR 185 SER 186 LEU 187 SER 188 SER 189 VAL 190 VAL 191 THR 192 VAL 193 PRO 194 SER 195 SER 196 SER 197 LEU 198 GLY 199 THR 200 GLN 203 THR 205 TYR 206 THR 207 CYS 208 ASN 209 VAL 210 ASN 211 HIS 212 LYS 213 PRO 214 SER 215 ASN 216 THR 217 LYS 218 VAL 219 ASP 220 LYS 221 ARG 222 VAL 223 GLU 226 LEU 227
Unit 6	LYS 305 ARG 306 ILE 307 HIS 308 ILE 309 GLY 312 PRO 313 GLY 314 ARG 315 ALA 316