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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE TYROSINE-REGULATED 3-DEOXY-D-ARABIN HEPTULOSONATE-7-PHOSPHATE SYNTHASE FROM SACCHAROMYCES CEREV COMPLEX WITH MANGANESE(II)
Keywords BETA-ALPHA-BARREL, LYASE, AROMATIC AMINO-ACID BIOSYNTHESIS S ALDOLASE, SYNTHETASE, MANGANESE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1OFQ     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE  A 343 2562 0
2  Protein   PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE  B 343 2565 0
3  Protein   PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE  C 344 2573 0
4  Protein   PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE  D 346 2583 0
5  Ligand   PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE  A 1 0 1
6  Ligand   PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE  B 1 0 1
7  Ligand   PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE  C 1 0 1
8  Ligand   PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE  D 1 0 1
9 Water     285 0 285
total       1665 10283 289
Proteins
Unit 1 VAL1023 ARG1024 ILE1025 LEU1026 GLY1027 TYR1028 ASP1029 PRO1030 LEU1031 ALA1032 SER1033 PRO1034 ALA1035 LEU1036 LEU1037 GLN1038 VAL1039 GLN1040 ILE1041 PRO1042 ALA1043 THR1044 PRO1045 THR1046 SER1047 LEU1048 GLU1049 THR1050 ALA1051 LYS1052 ARG1053 GLY1054 ARG1055 ARG1056 GLU1057 ALA1058 ILE1059 ASP1060 ILE1061 ILE1062 THR1063 GLY1064 LYS1065 ASP1066 ASP1067 ARG1068 VAL1069 LEU1070 VAL1071 ILE1072 VAL1073 GLY1074 PRO1075 CYS1076 SER1077 ILE1078 HIS1079 ASP1080 LEU1081 GLU1082 ALA1083 ALA1084 GLN1085 GLU1086 TYR1087 ALA1088 LEU1089 ARG1090 LEU1091 LYS1092 LYS1093 LEU1094 SER1095 ASP1096 GLU1097 LEU1098 LYS1099 GLY1100 ASP1101 LEU1102 SER1103 ILE1104 ILE1105 MET1106 ARG1107 ALA1108 TYR1109 LEU1110 GLU1111 LYS1112 PRO1113 VAL1117 GLY1118 TRP1119 LYS1120 GLY1121 LEU1122 ILE1123 ASN1124 ASP1125 PRO1126 ASP1127 VAL1128 ASN1129 ASN1130 THR1131 PHE1132 ASN1133 ILE1134 ASN1135 LYS1136 GLY1137 LEU1138 GLN1139 SER1140 ALA1141 ARG1142 GLN1143 LEU1144 PHE1145 VAL1146 ASN1147 LEU1148 THR1149 ASN1150 ILE1151 GLY1152 LEU1153 PRO1154 ILE1155 GLY1156 SER1157 GLU1158 MET1159 LEU1160 ASP1161 THR1162 ILE1163 SER1164 PRO1165 GLN1166 TYR1167 LEU1168 ALA1169 ASP1170 LEU1171 VAL1172 SER1173 PHE1174 GLY1175 ALA1176 ILE1177 GLY1178 ALA1179 ARG1180 THR1181 THR1182 GLU1183 SER1184 GLN1185 LEU1186 HIS1187 ARG1188 GLU1189 LEU1190 ALA1191 SER1192 GLY1193 LEU1194 SER1195 PHE1196 PRO1197 VAL1198 GLY1199 PHE1200 LYS1201 ASN1202 GLY1203 THR1204 ASP1205 GLY1206 THR1207 LEU1208 ASN1209 VAL1210 ALA1211 VAL1212 ASP1213 ALA1214 CYS1215 GLN1216 ALA1217 ALA1218 ALA1219 HIS1220 SER1221 HIS1222 HIS1223 PHE1224 MET1225 GLY1226 VAL1227 THR1228 HIS1230 GLY1231 VAL1232 ALA1233 ALA1234 ILE1235 THR1236 THR1237 THR1238 LYS1239 GLY1240 ASN1241 GLU1242 HIS1243 CYS1244 PHE1245 VAL1246 ILE1247 LEU1248 ARG1249 GLY1250 GLY1251 LYS1252 LYS1253 GLY1254 THR1255 ASN1256 TYR1257 ASP1258 ALA1259 LYS1260 SER1261 VAL1262 ALA1263 GLU1264 ALA1265 LYS1266 ALA1267 GLN1268 LEU1269 PRO1270 ALA1271 GLY1272 SER1273 ASN1274 GLY1275 LEU1276 MET1277 ILE1278 ASP1279 TYR1280 SER1281 HIS1282 GLY1283 ASN1284 SER1285 ASN1286 LYS1287 ASP1288 PHE1289 ARG1290 ASN1291 GLN1292 PRO1293 LYS1294 VAL1295 ASN1296 ASP1297 VAL1298 VAL1299 CYS1300 GLU1301 GLN1302 ILE1303 ALA1304 ASN1305 GLY1306 GLU1307 ASN1308 ALA1309 ILE1310 THR1311 GLY1312 VAL1313 MET1314 ILE1315 GLU1316 SER1317 ASN1318 ILE1319 ASN1320 GLU1321 GLY1322 ASN1323 GLN1324 GLY1325 ILE1326 PRO1327 ALA1328 GLU1329 GLY1330 LYS1331 ALA1332 GLY1333 LEU1334 LYS1335 TYR1336 GLY1337 VAL1338 SER1339 ILE1340 THR1341 ASP1342 ALA1343 CYS1344 ILE1345 GLY1346 TRP1347 GLU1348 THR1349 THR1350 GLU1351 ASP1352 VAL1353 LEU1354 ARG1355 LYS1356 LEU1357 ALA1358 ALA1359 ALA1360 VAL1361 ARG1362 GLN1363 ARG1364 ARG1365 GLU1366 VAL1367 ASN1368 LYS1369
Unit 2 VAL2023 ARG2024 ILE2025 LEU2026 GLY2027 TYR2028 ASP2029 PRO2030 LEU2031 ALA2032 SER2033 PRO2034 ALA2035 LEU2036 LEU2037 GLN2038 VAL2039 GLN2040 ILE2041 PRO2042 ALA2043 THR2044 PRO2045 THR2046 SER2047 LEU2048 GLU2049 THR2050 ALA2051 LYS2052 ARG2053 GLY2054 ARG2055 ARG2056 GLU2057 ALA2058 ILE2059 ASP2060 ILE2061 ILE2062 THR2063 GLY2064 LYS2065 ASP2066 ASP2067 ARG2068 VAL2069 LEU2070 VAL2071 ILE2072 VAL2073 GLY2074 PRO2075 CYS2076 SER2077 ILE2078 HIS2079 ASP2080 LEU2081 GLU2082 ALA2083 ALA2084 GLN2085 GLU2086 TYR2087 ALA2088 LEU2089 ARG2090 LEU2091 LYS2092 LYS2093 LEU2094 SER2095 ASP2096 GLU2097 LEU2098 LYS2099 GLY2100 ASP2101 LEU2102 SER2103 ILE2104 ILE2105 MET2106 ARG2107 ALA2108 TYR2109 LEU2110 GLU2111 PRO2113 ARG2114 THR2115 THR2116 TRP2119 LYS2120 GLY2121 LEU2122 ILE2123 ASN2124 ASP2125 PRO2126 ASP2127 VAL2128 ASN2129 ASN2130 THR2131 PHE2132 ASN2133 ILE2134 ASN2135 LYS2136 GLY2137 LEU2138 GLN2139 SER2140 ALA2141 ARG2142 GLN2143 LEU2144 PHE2145 VAL2146 ASN2147 LEU2148 THR2149 ASN2150 ILE2151 GLY2152 LEU2153 PRO2154 ILE2155 GLY2156 SER2157 GLU2158 MET2159 LEU2160 ASP2161 THR2162 ILE2163 SER2164 PRO2165 GLN2166 TYR2167 LEU2168 ALA2169 ASP2170 LEU2171 VAL2172 SER2173 PHE2174 GLY2175 ALA2176 ILE2177 GLY2178 ALA2179 ARG2180 THR2181 THR2182 GLU2183 SER2184 GLN2185 LEU2186 HIS2187 ARG2188 GLU2189 LEU2190 ALA2191 SER2192 GLY2193 LEU2194 SER2195 PHE2196 PRO2197 VAL2198 GLY2199 PHE2200 LYS2201 ASN2202 GLY2203 THR2204 ASP2205 GLY2206 THR2207 LEU2208 ASN2209 VAL2210 ALA2211 VAL2212 ASP2213 ALA2214 CYS2215 GLN2216 ALA2217 ALA2218 ALA2219 HIS2220 SER2221 HIS2222 HIS2223 PHE2224 MET2225 GLY2226 VAL2227 THR2228 LYS2229 HIS2230 GLY2231 VAL2232 ALA2233 ALA2234 ILE2235 THR2236 THR2237 THR2238 LYS2239 GLY2240 ASN2241 GLU2242 HIS2243 CYS2244 PHE2245 VAL2246 ILE2247 LEU2248 ARG2249 GLY2250 GLY2251 LYS2252 LYS2253 GLY2254 THR2255 ASN2256 TYR2257 ASP2258 ALA2259 LYS2260 SER2261 VAL2262 ALA2263 GLU2264 ALA2265 LYS2266 ALA2267 GLN2268 LEU2269 PRO2270 ALA2271 GLY2272 SER2273 ASN2274 GLY2275 LEU2276 MET2277 ILE2278 ASP2279 TYR2280 SER2281 HIS2282 GLY2283 ASN2284 SER2285 ASN2286 LYS2287 ASP2288 PHE2289 ARG2290 ASN2291 GLN2292 PRO2293 LYS2294 VAL2295 ASN2296 ASP2297 VAL2298 VAL2299 CYS2300 GLU2301 GLN2302 ILE2303 ALA2304 ASN2305 GLY2306 GLU2307 ASN2308 ALA2309 ILE2310 THR2311 GLY2312 VAL2313 MET2314 ILE2315 GLU2316 SER2317 ASN2318 ILE2319 ASN2320 GLU2321 GLY2322 ASN2323 GLN2324 GLY2325 ILE2326 GLU2329 GLY2330 LYS2331 ALA2332 GLY2333 LEU2334 LYS2335 TYR2336 GLY2337 VAL2338 SER2339 ILE2340 THR2341 ASP2342 ALA2343 CYS2344 ILE2345 GLY2346 TRP2347 GLU2348 THR2349 THR2350 GLU2351 ASP2352 VAL2353 LEU2354 ARG2355 LYS2356 LEU2357 ALA2358 ALA2359 ALA2360 VAL2361 ARG2362 GLN2363 ARG2364 ARG2365 GLU2366 VAL2367 ASN2368 LYS2369 LYS2370
Unit 3 VAL3023 ARG3024 ILE3025 LEU3026 GLY3027 TYR3028 ASP3029 PRO3030 LEU3031 ALA3032 SER3033 PRO3034 ALA3035 LEU3036 LEU3037 GLN3038 VAL3039 GLN3040 ILE3041 PRO3042 ALA3043 THR3044 PRO3045 THR3046 SER3047 LEU3048 GLU3049 THR3050 ALA3051 LYS3052 ARG3053 GLY3054 ARG3055 ARG3056 GLU3057 ALA3058 ILE3059 ASP3060 ILE3061 ILE3062 THR3063 GLY3064 LYS3065 ASP3066 ASP3067 ARG3068 VAL3069 LEU3070 VAL3071 ILE3072 VAL3073 GLY3074 PRO3075 CYS3076 SER3077 ILE3078 HIS3079 ASP3080 LEU3081 GLU3082 ALA3083 ALA3084 GLN3085 GLU3086 TYR3087 ALA3088 LEU3089 ARG3090 LEU3091 LYS3092 LYS3093 LEU3094 SER3095 ASP3096 GLU3097 LEU3098 LYS3099 GLY3100 ASP3101 LEU3102 SER3103 ILE3104 ILE3105 MET3106 ARG3107 ALA3108 TYR3109 LEU3110 GLU3111 LYS3112 PRO3113 ARG3114 VAL3117 GLY3118 TRP3119 LYS3120 GLY3121 LEU3122 ILE3123 ASN3124 ASP3125 PRO3126 ASP3127 VAL3128 ASN3129 ASN3130 THR3131 PHE3132 ASN3133 ILE3134 ASN3135 LYS3136 GLY3137 LEU3138 GLN3139 SER3140 ALA3141 ARG3142 GLN3143 LEU3144 PHE3145 VAL3146 ASN3147 LEU3148 THR3149 ASN3150 ILE3151 GLY3152 LEU3153 PRO3154 ILE3155 GLY3156 SER3157 GLU3158 MET3159 LEU3160 ASP3161 THR3162 ILE3163 SER3164 PRO3165 GLN3166 TYR3167 LEU3168 ALA3169 ASP3170 LEU3171 VAL3172 SER3173 PHE3174 GLY3175 ALA3176 ILE3177 GLY3178 ALA3179 ARG3180 THR3181 THR3182 GLU3183 SER3184 GLN3185 LEU3186 HIS3187 ARG3188 GLU3189 LEU3190 ALA3191 SER3192 GLY3193 LEU3194 SER3195 PHE3196 PRO3197 VAL3198 GLY3199 PHE3200 LYS3201 ASN3202 GLY3203 THR3204 ASP3205 GLY3206 THR3207 LEU3208 ASN3209 VAL3210 ALA3211 VAL3212 ASP3213 ALA3214 CYS3215 GLN3216 ALA3217 ALA3218 ALA3219 HIS3220 SER3221 HIS3222 HIS3223 PHE3224 MET3225 GLY3226 VAL3227 THR3228 HIS3230 GLY3231 VAL3232 ALA3233 ALA3234 ILE3235 THR3236 THR3237 THR3238 LYS3239 GLY3240 ASN3241 GLU3242 HIS3243 CYS3244 PHE3245 VAL3246 ILE3247 LEU3248 ARG3249 GLY3250 GLY3251 LYS3252 LYS3253 GLY3254 THR3255 ASN3256 TYR3257 ASP3258 ALA3259 LYS3260 SER3261 VAL3262 ALA3263 GLU3264 ALA3265 LYS3266 ALA3267 GLN3268 LEU3269 PRO3270 ALA3271 GLY3272 SER3273 ASN3274 GLY3275 LEU3276 MET3277 ILE3278 ASP3279 TYR3280 SER3281 HIS3282 GLY3283 ASN3284 SER3285 ASN3286 LYS3287 ASP3288 PHE3289 ARG3290 ASN3291 GLN3292 PRO3293 LYS3294 VAL3295 ASN3296 ASP3297 VAL3298 VAL3299 CYS3300 GLU3301 GLN3302 ILE3303 ALA3304 ASN3305 GLY3306 GLU3307 ASN3308 ALA3309 ILE3310 THR3311 GLY3312 VAL3313 MET3314 ILE3315 GLU3316 SER3317 ASN3318 ILE3319 ASN3320 GLU3321 GLY3322 ASN3323 GLN3324 GLY3325 ILE3326 PRO3327 ALA3328 GLU3329 GLY3330 LYS3331 ALA3332 GLY3333 LEU3334 LYS3335 TYR3336 GLY3337 VAL3338 SER3339 ILE3340 THR3341 ASP3342 ALA3343 CYS3344 ILE3345 GLY3346 TRP3347 GLU3348 THR3349 THR3350 GLU3351 ASP3352 VAL3353 LEU3354 ARG3355 LYS3356 LEU3357 ALA3358 ALA3359 ALA3360 VAL3361 ARG3362 GLN3363 ARG3364 ARG3365 GLU3366 VAL3367 ASN3368 LYS3369
Unit 4 VAL4023 ARG4024 ILE4025 LEU4026 GLY4027 TYR4028 ASP4029 PRO4030 LEU4031 ALA4032 SER4033 PRO4034 ALA4035 LEU4036 LEU4037 GLN4038 VAL4039 GLN4040 ILE4041 PRO4042 ALA4043 THR4044 PRO4045 THR4046 SER4047 LEU4048 GLU4049 THR4050 ALA4051 LYS4052 ARG4053 GLY4054 ARG4055 ARG4056 GLU4057 ALA4058 ILE4059 ASP4060 ILE4061 ILE4062 THR4063 GLY4064 LYS4065 ASP4066 ASP4067 ARG4068 VAL4069 LEU4070 VAL4071 ILE4072 VAL4073 GLY4074 PRO4075 CYS4076 SER4077 ILE4078 HIS4079 ASP4080 LEU4081 GLU4082 ALA4083 ALA4084 GLN4085 GLU4086 TYR4087 ALA4088 LEU4089 ARG4090 LEU4091 LYS4092 LYS4093 LEU4094 SER4095 ASP4096 GLU4097 LEU4098 LYS4099 GLY4100 ASP4101 LEU4102 SER4103 ILE4104 ILE4105 MET4106 ARG4107 ALA4108 TYR4109 LEU4110 GLU4111 PRO4113 ARG4114 THR4115 THR4116 VAL4117 GLY4118 TRP4119 LYS4120 GLY4121 LEU4122 ILE4123 ASN4124 ASP4125 PRO4126 ASP4127 VAL4128 ASN4129 ASN4130 THR4131 PHE4132 ASN4133 ILE4134 ASN4135 LYS4136 GLY4137 LEU4138 GLN4139 SER4140 ALA4141 ARG4142 GLN4143 LEU4144 PHE4145 VAL4146 ASN4147 LEU4148 THR4149 ASN4150 ILE4151 GLY4152 LEU4153 PRO4154 ILE4155 GLY4156 SER4157 GLU4158 MET4159 LEU4160 ASP4161 THR4162 ILE4163 SER4164 PRO4165 GLN4166 TYR4167 LEU4168 ALA4169 ASP4170 LEU4171 VAL4172 SER4173 PHE4174 GLY4175 ALA4176 ILE4177 GLY4178 ALA4179 ARG4180 THR4181 THR4182 GLU4183 SER4184 GLN4185 LEU4186 HIS4187 ARG4188 GLU4189 LEU4190 ALA4191 SER4192 GLY4193 LEU4194 SER4195 PHE4196 PRO4197 VAL4198 GLY4199 PHE4200 LYS4201 ASN4202 GLY4203 THR4204 ASP4205 GLY4206 THR4207 LEU4208 ASN4209 VAL4210 ALA4211 VAL4212 ASP4213 ALA4214 CYS4215 GLN4216 ALA4217 ALA4218 ALA4219 HIS4220 SER4221 HIS4222 HIS4223 PHE4224 MET4225 GLY4226 VAL4227 THR4228 LYS4229 HIS4230 GLY4231 VAL4232 ALA4233 ALA4234 ILE4235 THR4236 THR4237 THR4238 LYS4239 GLY4240 ASN4241 GLU4242 HIS4243 CYS4244 PHE4245 VAL4246 ILE4247 LEU4248 ARG4249 GLY4250 GLY4251 LYS4252 LYS4253 GLY4254 THR4255 ASN4256 TYR4257 ASP4258 ALA4259 LYS4260 SER4261 VAL4262 ALA4263 GLU4264 ALA4265 LYS4266 ALA4267 GLN4268 LEU4269 PRO4270 ALA4271 GLY4272 SER4273 ASN4274 GLY4275 LEU4276 MET4277 ILE4278 ASP4279 TYR4280 SER4281 HIS4282 GLY4283 ASN4284 SER4285 ASN4286 LYS4287 ASP4288 PHE4289 ARG4290 ASN4291 GLN4292 PRO4293 LYS4294 VAL4295 ASN4296 ASP4297 VAL4298 VAL4299 CYS4300 GLU4301 GLN4302 ILE4303 ALA4304 ASN4305 GLY4306 GLU4307 ASN4308 ALA4309 ILE4310 THR4311 GLY4312 VAL4313 MET4314 ILE4315 GLU4316 SER4317 ASN4318 ILE4319 ASN4320 GLU4321 GLY4322 ASN4323 GLN4324 GLY4325 ILE4326 PRO4327 ALA4328 GLU4329 GLY4330 LYS4331 ALA4332 GLY4333 LEU4334 LYS4335 TYR4336 GLY4337 VAL4338 SER4339 ILE4340 THR4341 ASP4342 ALA4343 CYS4344 ILE4345 GLY4346 TRP4347 GLU4348 THR4349 THR4350 GLU4351 ASP4352 VAL4353 LEU4354 ARG4355 LYS4356 LEU4357 ALA4358 ALA4359 ALA4360 VAL4361 ARG4362 GLN4363 ARG4364 ARG4365 GLU4366 VAL4367 ASN4368 LYS4369
Ligands
Unit 5 MN1000
Unit 6 MN2000
Unit 7 MN3000
Unit 8 MN4000
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany