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Sequence, Chains, Asymmetric and Biological Units

Title THE THREE-DIMENSIONAL STRUCTURE OF BETA-AGARASE B FROM ZOBELLIA GALACTANIVORANS
Keywords BETA-AGARASE, GLYCOSIDE HYDROLASE FAMILY 16, AGAROSE DEGRADATION, CLEAVAGE OF BETA-1, 4-D-GALACTOSE LINKAGES
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1O4Z     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   BETA-AGARASE B  A 295 2413 0
2  Protein   BETA-AGARASE B  B 297 2428 0
3  Protein   BETA-AGARASE B  C 296 2420 0
4  Protein   BETA-AGARASE B  D 297 2428 0
5  Ligand   BETA-AGARASE B  A 3 0 17
6  Ligand   BETA-AGARASE B  B 4 0 18
7  Ligand   BETA-AGARASE B  C 4 0 18
8  Ligand   BETA-AGARASE B  D 2 0 16
9 Water     888 0 888
total       2086 9689 957
Proteins
Unit 1 ASP59 TRP60 LYS61 ASP62 ILE63 PRO64 VAL65 PRO66 ALA67 ASP68 ALA69 GLY70 PRO71 ASN72 MET73 LYS74 TRP75 GLU76 PHE77 GLN78 GLU79 ILE80 SER81 ASP82 ASN83 PHE84 GLU85 TYR86 GLU87 ALA88 PRO89 ALA90 ASP91 ASN92 LYS93 GLY94 SER95 GLU96 PHE97 LEU98 GLU99 LYS100 TRP101 ASP102 ASP103 PHE104 TYR105 HIS106 ASN107 ALA108 TRP109 ALA110 GLY111 PRO112 GLY113 LEU114 THR115 GLU116 TRP117 LYS118 ARG119 ASP120 ARG121 SER122 TYR123 VAL124 ALA125 ASP126 GLY127 GLU128 LEU129 LYS130 MET131 TRP132 ALA133 THR134 ARG135 LYS136 PRO137 GLY138 SER139 ASP140 LYS141 ILE142 ASN143 MET144 GLY145 CYS146 ILE147 THR148 SER149 LYS150 THR151 ARG152 VAL153 VAL154 TYR155 PRO156 VAL157 TYR158 ILE159 GLU160 ALA161 ARG162 ALA163 LYS164 VAL165 MET166 ASN167 SER168 THR169 LEU170 ALA171 SER172 ASP173 VAL174 TRP175 LEU176 LEU177 SER178 ALA179 ASP180 ASP181 THR182 GLN183 GLU184 ILE185 ASP186 ILE187 LEU188 GLU189 ALA190 TYR191 GLY192 ALA193 ASP194 TYR195 SER196 GLU197 SER198 ALA199 GLY200 LYS201 ASP202 HIS203 SER204 TYR205 PHE206 SER207 LYS208 LYS209 VAL210 HIS211 ILE212 SER213 HIS214 HIS215 VAL216 PHE217 ILE218 ARG219 ASP220 PRO221 PHE222 GLN223 ASP224 TYR225 GLN226 PRO227 LYS228 ASP229 ALA230 GLY231 SER232 TRP233 PHE234 GLU235 ASP236 GLY237 THR238 VAL239 TRP240 ASN241 LYS242 GLU243 PHE244 HIS245 ARG246 PHE247 GLY248 VAL249 TYR250 TRP251 ARG252 ASP253 PRO254 TRP255 HIS256 LEU257 GLU258 TYR259 TYR260 ILE261 ASP262 GLY263 VAL264 LEU265 VAL266 ARG267 THR268 VAL269 SER270 GLY271 LYS272 ASP273 ILE274 ILE275 ASP276 PRO277 LYS278 HIS279 PHE280 THR281 ASN282 THR283 THR284 ASP285 PRO286 GLY287 ASN288 THR289 GLU290 ILE291 ASP292 THR293 ARG294 THR295 GLY296 LEU297 ASN298 LYS299 GLU300 MET301 ASP302 ILE303 ILE304 ILE305 ASN306 THR307 GLU308 ASP309 GLN310 THR311 TRP312 ARG313 SER314 SER315 PRO316 ALA317 SER318 GLY319 LEU320 GLN321 SER322 ASN323 THR324 TYR325 THR326 PRO327 THR328 ASP329 ASN330 GLU331 LEU332 SER333 ASN334 ILE335 GLU336 ASN337 ASN338 THR339 PHE340 GLY341 VAL342 ASP343 TRP344 ILE345 ARG346 ILE347 TYR348 LYS349 PRO350 VAL351 GLU352 LYS353
Unit 2 VAL58 ASP59 TRP60 LYS61 ASP62 ILE63 PRO64 VAL65 PRO66 ALA67 ASP68 ALA69 GLY70 PRO71 ASN72 MET73 LYS74 TRP75 GLU76 PHE77 GLN78 GLU79 ILE80 SER81 ASP82 ASN83 PHE84 GLU85 TYR86 GLU87 ALA88 PRO89 ALA90 ASP91 ASN92 LYS93 GLY94 SER95 GLU96 PHE97 LEU98 GLU99 LYS100 TRP101 ASP102 ASP103 PHE104 TYR105 HIS106 ASN107 ALA108 TRP109 ALA110 GLY111 PRO112 GLY113 LEU114 THR115 GLU116 TRP117 LYS118 ARG119 ASP120 ARG121 SER122 TYR123 VAL124 ALA125 ASP126 GLY127 GLU128 LEU129 LYS130 MET131 TRP132 ALA133 THR134 ARG135 LYS136 PRO137 GLY138 SER139 ASP140 LYS141 ILE142 ASN143 MET144 GLY145 CYS146 ILE147 THR148 SER149 LYS150 THR151 ARG152 VAL153 VAL154 TYR155 PRO156 VAL157 TYR158 ILE159 GLU160 ALA161 ARG162 ALA163 LYS164 VAL165 MET166 ASN167 SER168 THR169 LEU170 ALA171 SER172 ASP173 VAL174 TRP175 LEU176 LEU177 SER178 ALA179 ASP180 ASP181 THR182 GLN183 GLU184 ILE185 ASP186 ILE187 LEU188 GLU189 ALA190 TYR191 GLY192 ALA193 ASP194 TYR195 SER196 GLU197 SER198 ALA199 GLY200 LYS201 ASP202 HIS203 SER204 TYR205 PHE206 SER207 LYS208 LYS209 VAL210 HIS211 ILE212 SER213 HIS214 HIS215 VAL216 PHE217 ILE218 ARG219 ASP220 PRO221 PHE222 GLN223 ASP224 TYR225 GLN226 PRO227 LYS228 ASP229 ALA230 GLY231 SER232 TRP233 PHE234 GLU235 ASP236 GLY237 THR238 VAL239 TRP240 ASN241 LYS242 GLU243 PHE244 HIS245 ARG246 PHE247 GLY248 VAL249 TYR250 TRP251 ARG252 ASP253 PRO254 TRP255 HIS256 LEU257 GLU258 TYR259 TYR260 ILE261 ASP262 GLY263 VAL264 LEU265 VAL266 ARG267 THR268 VAL269 SER270 GLY271 LYS272 ASP273 ILE274 ILE275 ASP276 PRO277 LYS278 HIS279 PHE280 THR281 ASN282 THR283 THR284 ASP285 PRO286 GLY287 ASN288 THR289 GLU290 ILE291 ASP292 THR293 ARG294 THR295 GLY296 LEU297 ASN298 LYS299 GLU300 MET301 ASP302 ILE303 ILE304 ILE305 ASN306 THR307 GLU308 ASP309 GLN310 THR311 TRP312 ARG313 SER314 SER315 PRO316 ALA317 SER318 GLY319 LEU320 GLN321 SER322 ASN323 THR324 TYR325 THR326 PRO327 THR328 ASP329 ASN330 GLU331 LEU332 SER333 ASN334 ILE335 GLU336 ASN337 ASN338 THR339 PHE340 GLY341 VAL342 ASP343 TRP344 ILE345 ARG346 ILE347 TYR348 LYS349 PRO350 VAL351 GLU352 LYS353 LEU354
Unit 3 VAL58 ASP59 TRP60 LYS61 ASP62 ILE63 PRO64 VAL65 PRO66 ALA67 ASP68 ALA69 GLY70 PRO71 ASN72 MET73 LYS74 TRP75 GLU76 PHE77 GLN78 GLU79 ILE80 SER81 ASP82 ASN83 PHE84 GLU85 TYR86 GLU87 ALA88 PRO89 ALA90 ASP91 ASN92 LYS93 GLY94 SER95 GLU96 PHE97 LEU98 GLU99 LYS100 TRP101 ASP102 ASP103 PHE104 TYR105 HIS106 ASN107 ALA108 TRP109 ALA110 GLY111 PRO112 GLY113 LEU114 THR115 GLU116 TRP117 LYS118 ARG119 ASP120 ARG121 SER122 TYR123 VAL124 ALA125 ASP126 GLY127 GLU128 LEU129 LYS130 MET131 TRP132 ALA133 THR134 ARG135 LYS136 PRO137 GLY138 SER139 ASP140 LYS141 ILE142 ASN143 MET144 GLY145 CYS146 ILE147 THR148 SER149 LYS150 THR151 ARG152 VAL153 VAL154 TYR155 PRO156 VAL157 TYR158 ILE159 GLU160 ALA161 ARG162 ALA163 LYS164 VAL165 MET166 ASN167 SER168 THR169 LEU170 ALA171 SER172 ASP173 VAL174 TRP175 LEU176 LEU177 SER178 ALA179 ASP180 ASP181 THR182 GLN183 GLU184 ILE185 ASP186 ILE187 LEU188 GLU189 ALA190 TYR191 GLY192 ALA193 ASP194 TYR195 SER196 GLU197 SER198 ALA199 GLY200 LYS201 ASP202 HIS203 SER204 TYR205 PHE206 SER207 LYS208 LYS209 VAL210 HIS211 ILE212 SER213 HIS214 HIS215 VAL216 PHE217 ILE218 ARG219 ASP220 PRO221 PHE222 GLN223 ASP224 TYR225 GLN226 PRO227 LYS228 ASP229 ALA230 GLY231 SER232 TRP233 PHE234 GLU235 ASP236 GLY237 THR238 VAL239 TRP240 ASN241 LYS242 GLU243 PHE244 HIS245 ARG246 PHE247 GLY248 VAL249 TYR250 TRP251 ARG252 ASP253 PRO254 TRP255 HIS256 LEU257 GLU258 TYR259 TYR260 ILE261 ASP262 GLY263 VAL264 LEU265 VAL266 ARG267 THR268 VAL269 SER270 GLY271 LYS272 ASP273 ILE274 ILE275 ASP276 PRO277 LYS278 HIS279 PHE280 THR281 ASN282 THR283 THR284 ASP285 PRO286 GLY287 ASN288 THR289 GLU290 ILE291 ASP292 THR293 ARG294 THR295 GLY296 LEU297 ASN298 LYS299 GLU300 MET301 ASP302 ILE303 ILE304 ILE305 ASN306 THR307 GLU308 ASP309 GLN310 THR311 TRP312 ARG313 SER314 SER315 PRO316 ALA317 SER318 GLY319 LEU320 GLN321 SER322 ASN323 THR324 TYR325 THR326 PRO327 THR328 ASP329 ASN330 GLU331 LEU332 SER333 ASN334 ILE335 GLU336 ASN337 ASN338 THR339 PHE340 GLY341 VAL342 ASP343 TRP344 ILE345 ARG346 ILE347 TYR348 LYS349 PRO350 VAL351 GLU352 LYS353
Unit 4 VAL58 ASP59 TRP60 LYS61 ASP62 ILE63 PRO64 VAL65 PRO66 ALA67 ASP68 ALA69 GLY70 PRO71 ASN72 MET73 LYS74 TRP75 GLU76 PHE77 GLN78 GLU79 ILE80 SER81 ASP82 ASN83 PHE84 GLU85 TYR86 GLU87 ALA88 PRO89 ALA90 ASP91 ASN92 LYS93 GLY94 SER95 GLU96 PHE97 LEU98 GLU99 LYS100 TRP101 ASP102 ASP103 PHE104 TYR105 HIS106 ASN107 ALA108 TRP109 ALA110 GLY111 PRO112 GLY113 LEU114 THR115 GLU116 TRP117 LYS118 ARG119 ASP120 ARG121 SER122 TYR123 VAL124 ALA125 ASP126 GLY127 GLU128 LEU129 LYS130 MET131 TRP132 ALA133 THR134 ARG135 LYS136 PRO137 GLY138 SER139 ASP140 LYS141 ILE142 ASN143 MET144 GLY145 CYS146 ILE147 THR148 SER149 LYS150 THR151 ARG152 VAL153 VAL154 TYR155 PRO156 VAL157 TYR158 ILE159 GLU160 ALA161 ARG162 ALA163 LYS164 VAL165 MET166 ASN167 SER168 THR169 LEU170 ALA171 SER172 ASP173 VAL174 TRP175 LEU176 LEU177 SER178 ALA179 ASP180 ASP181 THR182 GLN183 GLU184 ILE185 ASP186 ILE187 LEU188 GLU189 ALA190 TYR191 GLY192 ALA193 ASP194 TYR195 SER196 GLU197 SER198 ALA199 GLY200 LYS201 ASP202 HIS203 SER204 TYR205 PHE206 SER207 LYS208 LYS209 VAL210 HIS211 ILE212 SER213 HIS214 HIS215 VAL216 PHE217 ILE218 ARG219 ASP220 PRO221 PHE222 GLN223 ASP224 TYR225 GLN226 PRO227 LYS228 ASP229 ALA230 GLY231 SER232 TRP233 PHE234 GLU235 ASP236 GLY237 THR238 VAL239 TRP240 ASN241 LYS242 GLU243 PHE244 HIS245 ARG246 PHE247 GLY248 VAL249 TYR250 TRP251 ARG252 ASP253 PRO254 TRP255 HIS256 LEU257 GLU258 TYR259 TYR260 ILE261 ASP262 GLY263 VAL264 LEU265 VAL266 ARG267 THR268 VAL269 SER270 GLY271 LYS272 ASP273 ILE274 ILE275 ASP276 PRO277 LYS278 HIS279 PHE280 THR281 ASN282 THR283 THR284 ASP285 PRO286 GLY287 ASN288 THR289 GLU290 ILE291 ASP292 THR293 ARG294 THR295 GLY296 LEU297 ASN298 LYS299 GLU300 MET301 ASP302 ILE303 ILE304 ILE305 ASN306 THR307 GLU308 ASP309 GLN310 THR311 TRP312 ARG313 SER314 SER315 PRO316 ALA317 SER318 GLY319 LEU320 GLN321 SER322 ASN323 THR324 TYR325 THR326 PRO327 THR328 ASP329 ASN330 GLU331 LEU332 SER333 ASN334 ILE335 GLU336 ASN337 ASN338 THR339 PHE340 GLY341 VAL342 ASP343 TRP344 ILE345 ARG346 ILE347 TYR348 LYS349 PRO350 VAL351 GLU352 LYS353 LEU354
Ligands
Unit 5 NA1004 NA1007 EPE2002
Unit 6 MG1001 NA1005 NA1008 EPE2004
Unit 7 MG1002 NA1006 NA1009 EPE2001
Unit 8 NA1003 EPE2003
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany