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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE GDP-MANNOSE 4,6-DEHYDRATASE TERNARY COMPLEX WITH NADPH AND GDP-RHAMNOSE.
Keywords ROSSMANN FOLD, SDR, SHORT-CHAIN DEHYDROGENASE/REDUCTASE, LYASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1N7G     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   GDP-D-MANNOSE-4,6-DEHYDRATASE  A 333 2625 0
2  Protein   GDP-D-MANNOSE-4,6-DEHYDRATASE  B 336 2626 0
3  Protein   GDP-D-MANNOSE-4,6-DEHYDRATASE  C 334 2620 0
4  Protein   GDP-D-MANNOSE-4,6-DEHYDRATASE  D 313 2382 0
5  Ligand   GDP-D-MANNOSE-4,6-DEHYDRATASE  A 4 0 162
6  Ligand   GDP-D-MANNOSE-4,6-DEHYDRATASE  B 1 0 48
7  Ligand   GDP-D-MANNOSE-4,6-DEHYDRATASE  C 1 0 48
8  Ligand   GDP-D-MANNOSE-4,6-DEHYDRATASE  D 1 0 48
9 Water     475 0 475
total       1798 10253 781
Proteins
Unit 1 ARG28 LYS29 ILE30 ALA31 LEU32 ILE33 THR34 GLY35 ILE36 THR37 GLY38 GLN39 ASP40 GLY41 SER42 TYR43 LEU44 THR45 GLU46 PHE47 LEU48 LEU49 GLY50 LYS51 GLY52 TYR53 GLU54 VAL55 HIS56 GLY57 LEU58 ILE59 ARG60 ARG61 SER62 SER63 ASN64 PHE65 ASN66 THR67 GLN68 ARG69 ILE70 ASN71 HIS72 ILE73 TYR74 LYS82 ALA83 LEU84 MET85 LYS86 LEU87 HIS88 TYR89 ALA90 ASP91 LEU92 THR93 ASP94 ALA95 SER96 SER97 LEU98 ARG99 ARG100 TRP101 ILE102 ASP103 VAL104 ILE105 LYS106 PRO107 ASP108 GLU109 VAL110 TYR111 ASN112 LEU113 ALA114 ALA115 GLN116 SER117 HIS118 VAL119 ALA120 VAL121 SER122 PHE123 GLU124 ILE125 PRO126 ASP127 TYR128 THR129 ALA130 ASP131 VAL132 VAL133 ALA134 THR135 GLY136 ALA137 LEU138 ARG139 LEU140 LEU141 GLU142 ALA143 VAL144 ARG145 SER146 HIS147 THR148 ILE149 ASP150 SER151 GLY152 ARG153 THR154 VAL155 LYS156 TYR157 TYR158 GLN159 ALA160 GLY161 SER162 SER163 GLU164 MET165 PHE166 GLY167 SER168 THR169 PRO170 PRO171 PRO172 GLN173 SER174 GLU175 THR176 THR177 PRO178 PHE179 HIS180 PRO181 ARG182 SER183 PRO184 TYR185 ALA186 ALA187 SER188 LYS189 CYS190 ALA191 ALA192 HIS193 TRP194 TYR195 THR196 VAL197 ASN198 TYR199 ARG200 GLU201 ALA202 TYR203 GLY204 LEU205 PHE206 ALA207 CYS208 ASN209 GLY210 ILE211 LEU212 PHE213 ASN214 HIS215 GLU216 SER217 PRO218 ARG219 ARG220 GLY221 GLU222 ASN223 PHE224 VAL225 THR226 ARG227 LYS228 ILE229 THR230 ARG231 ALA232 LEU233 GLY234 ARG235 ILE236 LYS237 VAL238 GLY239 LEU240 GLN241 THR242 LYS243 LEU244 PHE245 LEU246 GLY247 ASN248 LEU249 GLN250 ALA251 SER252 ARG253 ASP254 TRP255 GLY256 PHE257 ALA258 GLY259 ASP260 TYR261 VAL262 GLU263 ALA264 MET265 TRP266 LEU267 MET268 LEU269 GLN270 GLN271 GLU272 LYS273 PRO274 ASP275 ASP276 TYR277 VAL278 VAL279 ALA280 THR281 GLU282 GLU283 GLY284 HIS285 THR286 VAL287 GLU288 GLU289 PHE290 LEU291 ASP292 VAL293 SER294 PHE295 GLY296 TYR297 LEU298 GLY299 LEU300 ASN301 TRP302 LYS303 ASP304 TYR305 VAL306 GLU307 ILE308 ASP309 GLN310 ARG311 TYR312 PHE313 ARG314 PRO315 ALA316 GLU317 VAL318 ASP319 ASN320 LEU321 GLN322 GLY323 ASP324 ALA325 SER326 LYS327 ALA328 LYS329 GLU330 VAL331 LEU332 GLY333 TRP334 LYS335 PRO336 GLN337 VAL338 GLY339 PHE340 GLU341 LYS342 LEU343 VAL344 LYS345 MET346 MET347 VAL348 ASP349 GLU350 ASP351 LEU352 GLU353 LEU354 ALA355 LYS356 ARG357 GLU358 LYS359 VAL360 LEU361 VAL362 ASP363 ALA364 GLY365 TYR366 MET367
Unit 2 ARG28 LYS29 ILE30 ALA31 LEU32 ILE33 THR34 GLY35 ILE36 THR37 GLY38 GLN39 ASP40 GLY41 SER42 TYR43 LEU44 THR45 GLU46 PHE47 LEU48 LEU49 GLY50 LYS51 GLY52 TYR53 GLU54 VAL55 HIS56 GLY57 LEU58 ILE59 ARG60 ARG61 SER62 SER63 ASN64 PHE65 ASN66 THR67 GLN68 ARG69 ILE70 ASN71 HIS72 ILE73 TYR74 ILE75 ASP76 LYS82 ALA83 LEU84 MET85 LYS86 LEU87 HIS88 TYR89 ALA90 ASP91 LEU92 THR93 ASP94 ALA95 SER96 SER97 LEU98 ARG99 ARG100 TRP101 ILE102 ASP103 VAL104 ILE105 LYS106 PRO107 ASP108 GLU109 VAL110 TYR111 ASN112 LEU113 ALA114 ALA115 GLN116 SER117 HIS118 VAL119 ALA120 VAL121 SER122 PHE123 GLU124 ILE125 PRO126 ASP127 TYR128 THR129 ALA130 ASP131 VAL132 VAL133 ALA134 THR135 GLY136 ALA137 LEU138 ARG139 LEU140 LEU141 GLU142 ALA143 VAL144 ARG145 SER146 HIS147 THR148 ILE149 ASP150 SER151 GLY152 ARG153 THR154 VAL155 LYS156 TYR157 TYR158 GLN159 ALA160 GLY161 SER162 SER163 GLU164 MET165 PHE166 GLY167 SER168 THR169 PRO170 PRO171 PRO172 GLN173 SER174 GLU175 THR176 THR177 PRO178 PHE179 HIS180 PRO181 ARG182 SER183 PRO184 TYR185 ALA186 ALA187 SER188 LYS189 CYS190 ALA191 ALA192 HIS193 TRP194 TYR195 THR196 VAL197 ASN198 TYR199 ARG200 GLU201 ALA202 TYR203 GLY204 LEU205 PHE206 ALA207 CYS208 ASN209 GLY210 ILE211 LEU212 PHE213 ASN214 HIS215 GLU216 SER217 PRO218 ARG219 ARG220 GLY221 GLU222 ASN223 PHE224 VAL225 THR226 ARG227 LYS228 ILE229 THR230 ARG231 ALA232 LEU233 GLY234 ARG235 ILE236 LYS237 VAL238 GLY239 LEU240 GLN241 THR242 LYS243 LEU244 PHE245 LEU246 GLY247 ASN248 LEU249 GLN250 ALA251 SER252 ARG253 ASP254 TRP255 GLY256 PHE257 ALA258 GLY259 ASP260 TYR261 VAL262 GLU263 ALA264 MET265 TRP266 LEU267 MET268 LEU269 GLN270 GLN271 GLU272 LYS273 PRO274 ASP275 ASP276 TYR277 VAL278 VAL279 ALA280 THR281 GLU282 GLU283 GLY284 HIS285 THR286 VAL287 GLU288 GLU289 PHE290 LEU291 ASP292 VAL293 SER294 PHE295 GLY296 TYR297 LEU298 GLY299 LEU300 ASN301 TRP302 LYS303 ASP304 TYR305 VAL306 GLU307 ILE308 ASP309 GLN310 ARG311 TYR312 PHE313 ARG314 PRO315 ALA316 GLU317 VAL318 ASP319 ASN320 LEU321 GLN322 GLY323 ASP324 ALA325 SER326 LYS327 ALA328 LYS329 GLU330 VAL331 LEU332 GLY333 TRP334 LYS335 PRO336 GLN337 VAL338 GLY339 PHE340 GLU341 LYS342 LEU343 VAL344 LYS345 MET346 MET347 VAL348 ASP349 GLU350 ASP351 LEU352 GLU353 LEU354 ALA355 LYS356 ARG357 GLU358 LYS359 VAL360 LEU361 VAL362 ASP363 ALA364 GLY365 TYR366 MET367 ASP368
Unit 3 ARG28 LYS29 ILE30 ALA31 LEU32 ILE33 THR34 GLY35 ILE36 THR37 GLY38 GLN39 ASP40 GLY41 SER42 TYR43 LEU44 THR45 GLU46 PHE47 LEU48 LEU49 GLY50 LYS51 GLY52 TYR53 GLU54 VAL55 HIS56 GLY57 LEU58 ILE59 ARG60 ARG61 SER62 SER63 ASN64 PHE65 ASN66 THR67 GLN68 ARG69 ILE70 ASN71 HIS72 ILE73 TYR74 ILE75 LYS82 ALA83 LEU84 MET85 LYS86 LEU87 HIS88 TYR89 ALA90 ASP91 LEU92 THR93 ASP94 ALA95 SER96 SER97 LEU98 ARG99 ARG100 TRP101 ILE102 ASP103 VAL104 ILE105 LYS106 PRO107 ASP108 GLU109 VAL110 TYR111 ASN112 LEU113 ALA114 ALA115 GLN116 SER117 HIS118 VAL119 ALA120 VAL121 SER122 PHE123 GLU124 ILE125 PRO126 ASP127 TYR128 THR129 ALA130 ASP131 VAL132 VAL133 ALA134 THR135 GLY136 ALA137 LEU138 ARG139 LEU140 LEU141 GLU142 ALA143 VAL144 ARG145 SER146 HIS147 THR148 ILE149 ASP150 SER151 GLY152 ARG153 THR154 VAL155 LYS156 TYR157 TYR158 GLN159 ALA160 GLY161 SER162 SER163 GLU164 MET165 PHE166 GLY167 SER168 THR169 PRO170 PRO171 PRO172 GLN173 SER174 GLU175 THR176 THR177 PRO178 PHE179 HIS180 PRO181 ARG182 SER183 PRO184 TYR185 ALA186 ALA187 SER188 LYS189 CYS190 ALA191 ALA192 HIS193 TRP194 TYR195 THR196 VAL197 ASN198 TYR199 ARG200 GLU201 ALA202 TYR203 GLY204 LEU205 PHE206 ALA207 CYS208 ASN209 GLY210 ILE211 LEU212 PHE213 ASN214 HIS215 GLU216 SER217 PRO218 ARG219 ARG220 GLY221 GLU222 ASN223 PHE224 VAL225 THR226 ARG227 LYS228 ILE229 THR230 ARG231 ALA232 LEU233 GLY234 ARG235 ILE236 LYS237 VAL238 GLY239 LEU240 GLN241 THR242 LYS243 LEU244 PHE245 LEU246 GLY247 ASN248 LEU249 GLN250 ALA251 SER252 ARG253 ASP254 TRP255 GLY256 PHE257 ALA258 GLY259 ASP260 TYR261 VAL262 GLU263 ALA264 MET265 TRP266 LEU267 MET268 LEU269 GLN270 GLN271 GLU272 LYS273 PRO274 ASP275 ASP276 TYR277 VAL278 VAL279 ALA280 THR281 GLU282 GLU283 GLY284 HIS285 THR286 VAL287 GLU288 GLU289 PHE290 LEU291 ASP292 VAL293 SER294 PHE295 GLY296 TYR297 LEU298 GLY299 LEU300 ASN301 TRP302 LYS303 ASP304 TYR305 VAL306 GLU307 ILE308 ASP309 GLN310 ARG311 TYR312 PHE313 ARG314 PRO315 ALA316 GLU317 VAL318 ASP319 ASN320 LEU321 GLN322 GLY323 ASP324 ALA325 SER326 LYS327 ALA328 LYS329 GLU330 VAL331 LEU332 GLY333 TRP334 LYS335 PRO336 GLN337 VAL338 GLY339 PHE340 GLU341 LYS342 LEU343 VAL344 LYS345 MET346 MET347 VAL348 ASP349 GLU350 ASP351 LEU352 GLU353 LEU354 ALA355 LYS356 ARG357 GLU358 LYS359 VAL360 LEU361 VAL362 ASP363 ALA364 GLY365 TYR366 MET367
Unit 4 ARG28 LYS29 ILE30 ALA31 LEU32 ILE33 THR34 GLY35 ILE36 THR37 GLY38 GLN39 ASP40 GLY41 SER42 TYR43 LEU44 THR45 GLU46 PHE47 LEU48 LEU49 GLY50 LYS51 GLY52 TYR53 GLU54 VAL55 HIS56 GLY57 LEU58 ILE59 ARG60 ARG61 SER62 SER63 ASN64 PHE65 ASN66 THR67 GLN68 ARG69 ILE70 ASN71 HIS72 ILE73 TYR74 ILE75 LEU84 MET85 LYS86 LEU87 HIS88 TYR89 ALA90 ASP91 LEU92 THR93 ASP94 ALA95 SER96 SER97 LEU98 ARG99 ARG100 TRP101 ILE102 ASP103 VAL104 ILE105 LYS106 PRO107 ASP108 GLU109 VAL110 TYR111 ASN112 LEU113 ALA114 ALA115 GLN116 SER117 HIS118 VAL119 ALA120 VAL121 SER122 PHE123 GLU124 ILE125 PRO126 ASP127 TYR128 THR129 ALA130 ASP131 VAL132 VAL133 ALA134 THR135 GLY136 ALA137 LEU138 ARG139 LEU140 LEU141 GLU142 ALA143 VAL144 ARG145 SER146 HIS147 THR148 ILE149 ASP150 SER151 GLY152 ARG153 THR154 VAL155 LYS156 TYR157 TYR158 GLN159 ALA160 GLY161 SER162 SER163 GLU164 MET165 PHE166 GLY167 SER168 THR169 PRO170 PRO171 PRO172 GLN173 SER174 GLU175 THR176 THR177 PRO178 PHE179 HIS180 PRO181 ARG182 SER183 PRO184 TYR185 ALA186 ALA187 SER188 LYS189 CYS190 ALA191 ALA192 HIS193 TRP194 TYR195 THR196 VAL197 ASN198 TYR199 ARG200 GLU201 ALA202 TYR203 GLY204 LEU205 PHE206 ALA207 CYS208 ASN209 GLY210 ILE211 LEU212 PHE213 ASN214 HIS215 GLU216 SER217 PRO218 ARG219 ARG220 GLY221 GLU222 ASN223 PHE224 VAL225 THR226 ARG227 LYS228 ILE229 THR230 ARG231 ALA232 LEU233 GLY234 ARG235 ILE236 LYS237 VAL238 GLY239 LEU240 GLN241 THR242 LYS243 LEU244 PHE245 ALA251 SER252 ARG253 ASP254 TRP255 GLY256 PHE257 ALA258 GLY259 ASP260 TYR261 VAL262 GLU263 ALA264 MET265 TRP266 LEU267 MET268 LEU269 GLN270 GLN271 GLU272 LYS273 PRO274 ASP275 ASP276 TYR277 VAL278 VAL279 ALA280 THR281 GLU282 GLU283 GLY284 HIS285 THR286 VAL287 GLU288 GLU289 PHE290 LEU291 ASP292 VAL293 SER294 PHE295 GLY296 TYR297 LEU298 GLY299 LEU300 ASN301 TRP302 LYS303 ASP304 TYR305 VAL306 GLU307 ILE308 ASP309 ASP319 ASN320 LEU321 GLN322 GLY323 ASP324 ALA325 SER326 LYS327 ALA328 LYS329 GLU330 VAL331 LEU332 GLY333 TRP334 LYS335 PRO336 GLN337 VAL338 GLY339 PHE340 GLU341 LYS342 LEU343 VAL344 LYS345 MET346 MET347 VAL348 ASP349 GLU350 ASP351 LEU352 GLU353 LEU354 ALA355 LYS356 ARG357 GLU358 LYS359 VAL360 LEU361 VAL362
Ligands
Unit 5 NDP701 GDR801 GDR802 GDR803
Unit 6 NDP702
Unit 7 NDP703
Unit 8 NDP704
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany