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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF CORONAVIRUS MAIN PROTEINASE REVEALS COMBINATION CHYMOTRYPSIN FOLD WITH AN EXTRA ALPHA-HELICAL DOMAIN
Keywords 3C LIKE, CORONA, PROTEINASE, CHYMOTRYPSIN, CYSTEINE HISTIDIN BETA BARREL, HYDROLASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1LVO     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   REPLICASE, HYDROLASE DOMAIN  A 299 2297 0
2  Protein   REPLICASE, HYDROLASE DOMAIN  B 300 2305 0
3  Protein   REPLICASE, HYDROLASE DOMAIN  C 300 2305 0
4  Protein   REPLICASE, HYDROLASE DOMAIN  D 301 2313 0
5  Protein   REPLICASE, HYDROLASE DOMAIN  E 299 2297 0
6  Protein   REPLICASE, HYDROLASE DOMAIN  F 299 2288 0
7  Ligand   REPLICASE, HYDROLASE DOMAIN  A 9 0 51
8  Ligand   REPLICASE, HYDROLASE DOMAIN  B 6 0 34
9  Ligand   REPLICASE, HYDROLASE DOMAIN  C 8 0 45
10  Ligand   REPLICASE, HYDROLASE DOMAIN  D 6 0 33
11  Ligand   REPLICASE, HYDROLASE DOMAIN  E 7 0 40
12  Ligand   REPLICASE, HYDROLASE DOMAIN  F 6 0 34
13 Water     1003 0 1003
total       2843 13805 1240
Proteins
Unit 1 SER1 GLY2 LEU3 ARG4 LYS5 MET6 ALA7 GLN8 PRO9 SER10 GLY11 LEU12 VAL13 GLU14 PRO15 CYS16 ILE17 VAL18 ARG19 VAL20 SER21 TYR22 GLY23 ASN24 ASN25 VAL26 LEU27 ASN28 GLY29 LEU30 TRP31 LEU32 GLY33 ASP34 GLU35 VAL36 ILE37 CYS38 PRO39 ARG40 HIS41 VAL42 ILE43 ALA44 SER45 ASP46 THR47 THR48 ARG49 VAL50 ILE51 ASN52 TYR53 GLU54 ASN55 GLU56 MET57 SER58 SER59 VAL60 ARG61 LEU62 HIS63 ASN64 PHE65 SER66 VAL67 SER68 LYS69 ASN70 ASN71 VAL72 PHE73 LEU74 GLY75 VAL76 VAL77 SER78 ALA79 ARG80 TYR81 LYS82 GLY83 VAL84 ASN85 LEU86 VAL87 LEU88 LYS89 VAL90 ASN91 GLN92 VAL93 ASN94 PRO95 ASN96 THR97 PRO98 GLU99 HIS100 LYS101 PHE102 LYS103 SER104 ILE105 LYS106 ALA107 GLY108 GLU109 SER110 PHE111 ASN112 ILE113 LEU114 ALA115 CYS116 TYR117 GLU118 GLY119 CYS120 PRO121 GLY122 SER123 VAL124 TYR125 GLY126 VAL127 ASN128 MET129 ARG130 SER131 GLN132 GLY133 THR134 ILE135 LYS136 GLY137 SER138 PHE139 ILE140 ALA141 GLY142 THR143 CYS144 GLY145 SER146 VAL147 GLY148 TYR149 VAL150 LEU151 GLU152 ASN153 GLY154 ILE155 LEU156 TYR157 PHE158 VAL159 TYR160 MET161 HIS162 HIS163 LEU164 GLU165 LEU166 GLY167 ASN168 GLY169 SER170 HIS171 VAL172 GLY173 SER174 ASN175 PHE176 GLU177 GLY178 GLU179 MET180 TYR181 GLY182 GLY183 TYR184 GLU185 ASP186 GLN187 PRO188 SER189 MET190 GLN191 LEU192 GLU193 GLY194 THR195 ASN196 VAL197 MET198 SER199 SER200 ASP201 ASN202 VAL203 VAL204 ALA205 PHE206 LEU207 TYR208 ALA209 ALA210 LEU211 ILE212 ASN213 GLY214 GLU215 ARG216 TRP217 PHE218 VAL219 THR220 ASN221 THR222 SER223 MET224 SER225 LEU226 GLU227 SER228 TYR229 ASN230 THR231 TRP232 ALA233 LYS234 THR235 ASN236 SER237 PHE238 THR239 GLU240 LEU241 SER242 SER243 THR244 ASP245 ALA246 PHE247 SER248 MET249 LEU250 ALA251 ALA252 LYS253 THR254 GLY255 GLN256 SER257 VAL258 GLU259 LYS260 LEU261 LEU262 ASP263 SER264 ILE265 VAL266 ARG267 LEU268 ASN269 LYS270 GLY271 PHE272 GLY273 GLY274 ARG275 THR276 ILE277 LEU278 SER279 TYR280 GLY281 SER282 LEU283 CYS284 ASP285 GLU286 PHE287 THR288 PRO289 THR290 GLU291 VAL292 ILE293 ARG294 GLN295 MET296 TYR297 GLY298 VAL299
Unit 2 SER1 GLY2 LEU3 ARG4 LYS5 MET6 ALA7 GLN8 PRO9 SER10 GLY11 LEU12 VAL13 GLU14 PRO15 CYS16 ILE17 VAL18 ARG19 VAL20 SER21 TYR22 GLY23 ASN24 ASN25 VAL26 LEU27 ASN28 GLY29 LEU30 TRP31 LEU32 GLY33 ASP34 GLU35 VAL36 ILE37 CYS38 PRO39 ARG40 HIS41 VAL42 ILE43 ALA44 SER45 ASP46 THR47 THR48 ARG49 VAL50 ILE51 ASN52 TYR53 GLU54 ASN55 GLU56 MET57 SER58 SER59 VAL60 ARG61 LEU62 HIS63 ASN64 PHE65 SER66 VAL67 SER68 LYS69 ASN70 ASN71 VAL72 PHE73 LEU74 GLY75 VAL76 VAL77 SER78 ALA79 ARG80 TYR81 LYS82 GLY83 VAL84 ASN85 LEU86 VAL87 LEU88 LYS89 VAL90 ASN91 GLN92 VAL93 ASN94 PRO95 ASN96 THR97 PRO98 GLU99 HIS100 LYS101 PHE102 LYS103 SER104 ILE105 LYS106 ALA107 GLY108 GLU109 SER110 PHE111 ASN112 ILE113 LEU114 ALA115 CYS116 TYR117 GLU118 GLY119 CYS120 PRO121 GLY122 SER123 VAL124 TYR125 GLY126 VAL127 ASN128 MET129 ARG130 SER131 GLN132 GLY133 THR134 ILE135 LYS136 GLY137 SER138 PHE139 ILE140 ALA141 GLY142 THR143 CYS144 GLY145 SER146 VAL147 GLY148 TYR149 VAL150 LEU151 GLU152 ASN153 GLY154 ILE155 LEU156 TYR157 PHE158 VAL159 TYR160 MET161 HIS162 HIS163 LEU164 GLU165 LEU166 GLY167 ASN168 GLY169 SER170 HIS171 VAL172 GLY173 SER174 ASN175 PHE176 GLU177 GLY178 GLU179 MET180 TYR181 GLY182 GLY183 TYR184 GLU185 ASP186 GLN187 PRO188 SER189 MET190 GLN191 LEU192 GLU193 GLY194 THR195 ASN196 VAL197 MET198 SER199 SER200 ASP201 ASN202 VAL203 VAL204 ALA205 PHE206 LEU207 TYR208 ALA209 ALA210 LEU211 ILE212 ASN213 GLY214 GLU215 ARG216 TRP217 PHE218 VAL219 THR220 ASN221 THR222 SER223 MET224 SER225 LEU226 GLU227 SER228 TYR229 ASN230 THR231 TRP232 ALA233 LYS234 THR235 ASN236 SER237 PHE238 THR239 GLU240 LEU241 SER242 SER243 THR244 ASP245 ALA246 PHE247 SER248 MET249 LEU250 ALA251 ALA252 LYS253 THR254 GLY255 GLN256 SER257 VAL258 GLU259 LYS260 LEU261 LEU262 ASP263 SER264 ILE265 VAL266 ARG267 LEU268 ASN269 LYS270 GLY271 PHE272 GLY273 GLY274 ARG275 THR276 ILE277 LEU278 SER279 TYR280 GLY281 SER282 LEU283 CYS284 ASP285 GLU286 PHE287 THR288 PRO289 THR290 GLU291 VAL292 ILE293 ARG294 GLN295 MET296 TYR297 GLY298 VAL299 ASN300
Unit 3 SER1 GLY2 LEU3 ARG4 LYS5 MET6 ALA7 GLN8 PRO9 SER10 GLY11 LEU12 VAL13 GLU14 PRO15 CYS16 ILE17 VAL18 ARG19 VAL20 SER21 TYR22 GLY23 ASN24 ASN25 VAL26 LEU27 ASN28 GLY29 LEU30 TRP31 LEU32 GLY33 ASP34 GLU35 VAL36 ILE37 CYS38 PRO39 ARG40 HIS41 VAL42 ILE43 ALA44 SER45 ASP46 THR47 THR48 ARG49 VAL50 ILE51 ASN52 TYR53 GLU54 ASN55 GLU56 MET57 SER58 SER59 VAL60 ARG61 LEU62 HIS63 ASN64 PHE65 SER66 VAL67 SER68 LYS69 ASN70 ASN71 VAL72 PHE73 LEU74 GLY75 VAL76 VAL77 SER78 ALA79 ARG80 TYR81 LYS82 GLY83 VAL84 ASN85 LEU86 VAL87 LEU88 LYS89 VAL90 ASN91 GLN92 VAL93 ASN94 PRO95 ASN96 THR97 PRO98 GLU99 HIS100 LYS101 PHE102 LYS103 SER104 ILE105 LYS106 ALA107 GLY108 GLU109 SER110 PHE111 ASN112 ILE113 LEU114 ALA115 CYS116 TYR117 GLU118 GLY119 CYS120 PRO121 GLY122 SER123 VAL124 TYR125 GLY126 VAL127 ASN128 MET129 ARG130 SER131 GLN132 GLY133 THR134 ILE135 LYS136 GLY137 SER138 PHE139 ILE140 ALA141 GLY142 THR143 CYS144 GLY145 SER146 VAL147 GLY148 TYR149 VAL150 LEU151 GLU152 ASN153 GLY154 ILE155 LEU156 TYR157 PHE158 VAL159 TYR160 MET161 HIS162 HIS163 LEU164 GLU165 LEU166 GLY167 ASN168 GLY169 SER170 HIS171 VAL172 GLY173 SER174 ASN175 PHE176 GLU177 GLY178 GLU179 MET180 TYR181 GLY182 GLY183 TYR184 GLU185 ASP186 GLN187 PRO188 SER189 MET190 GLN191 LEU192 GLU193 GLY194 THR195 ASN196 VAL197 MET198 SER199 SER200 ASP201 ASN202 VAL203 VAL204 ALA205 PHE206 LEU207 TYR208 ALA209 ALA210 LEU211 ILE212 ASN213 GLY214 GLU215 ARG216 TRP217 PHE218 VAL219 THR220 ASN221 THR222 SER223 MET224 SER225 LEU226 GLU227 SER228 TYR229 ASN230 THR231 TRP232 ALA233 LYS234 THR235 ASN236 SER237 PHE238 THR239 GLU240 LEU241 SER242 SER243 THR244 ASP245 ALA246 PHE247 SER248 MET249 LEU250 ALA251 ALA252 LYS253 THR254 GLY255 GLN256 SER257 VAL258 GLU259 LYS260 LEU261 LEU262 ASP263 SER264 ILE265 VAL266 ARG267 LEU268 ASN269 LYS270 GLY271 PHE272 GLY273 GLY274 ARG275 THR276 ILE277 LEU278 SER279 TYR280 GLY281 SER282 LEU283 CYS284 ASP285 GLU286 PHE287 THR288 PRO289 THR290 GLU291 VAL292 ILE293 ARG294 GLN295 MET296 TYR297 GLY298 VAL299 ASN300
Unit 4 SER1 GLY2 LEU3 ARG4 LYS5 MET6 ALA7 GLN8 PRO9 SER10 GLY11 LEU12 VAL13 GLU14 PRO15 CYS16 ILE17 VAL18 ARG19 VAL20 SER21 TYR22 GLY23 ASN24 ASN25 VAL26 LEU27 ASN28 GLY29 LEU30 TRP31 LEU32 GLY33 ASP34 GLU35 VAL36 ILE37 CYS38 PRO39 ARG40 HIS41 VAL42 ILE43 ALA44 SER45 ASP46 THR47 THR48 ARG49 VAL50 ILE51 ASN52 TYR53 GLU54 ASN55 GLU56 MET57 SER58 SER59 VAL60 ARG61 LEU62 HIS63 ASN64 PHE65 SER66 VAL67 SER68 LYS69 ASN70 ASN71 VAL72 PHE73 LEU74 GLY75 VAL76 VAL77 SER78 ALA79 ARG80 TYR81 LYS82 GLY83 VAL84 ASN85 LEU86 VAL87 LEU88 LYS89 VAL90 ASN91 GLN92 VAL93 ASN94 PRO95 ASN96 THR97 PRO98 GLU99 HIS100 LYS101 PHE102 LYS103 SER104 ILE105 LYS106 ALA107 GLY108 GLU109 SER110 PHE111 ASN112 ILE113 LEU114 ALA115 CYS116 TYR117 GLU118 GLY119 CYS120 PRO121 GLY122 SER123 VAL124 TYR125 GLY126 VAL127 ASN128 MET129 ARG130 SER131 GLN132 GLY133 THR134 ILE135 LYS136 GLY137 SER138 PHE139 ILE140 ALA141 GLY142 THR143 CYS144 GLY145 SER146 VAL147 GLY148 TYR149 VAL150 LEU151 GLU152 ASN153 GLY154 ILE155 LEU156 TYR157 PHE158 VAL159 TYR160 MET161 HIS162 HIS163 LEU164 GLU165 LEU166 GLY167 ASN168 GLY169 SER170 HIS171 VAL172 GLY173 SER174 ASN175 PHE176 GLU177 GLY178 GLU179 MET180 TYR181 GLY182 GLY183 TYR184 GLU185 ASP186 GLN187 PRO188 SER189 MET190 GLN191 LEU192 GLU193 GLY194 THR195 ASN196 VAL197 MET198 SER199 SER200 ASP201 ASN202 VAL203 VAL204 ALA205 PHE206 LEU207 TYR208 ALA209 ALA210 LEU211 ILE212 ASN213 GLY214 GLU215 ARG216 TRP217 PHE218 VAL219 THR220 ASN221 THR222 SER223 MET224 SER225 LEU226 GLU227 SER228 TYR229 ASN230 THR231 TRP232 ALA233 LYS234 THR235 ASN236 SER237 PHE238 THR239 GLU240 LEU241 SER242 SER243 THR244 ASP245 ALA246 PHE247 SER248 MET249 LEU250 ALA251 ALA252 LYS253 THR254 GLY255 GLN256 SER257 VAL258 GLU259 LYS260 LEU261 LEU262 ASP263 SER264 ILE265 VAL266 ARG267 LEU268 ASN269 LYS270 GLY271 PHE272 GLY273 GLY274 ARG275 THR276 ILE277 LEU278 SER279 TYR280 GLY281 SER282 LEU283 CYS284 ASP285 GLU286 PHE287 THR288 PRO289 THR290 GLU291 VAL292 ILE293 ARG294 GLN295 MET296 TYR297 GLY298 VAL299 ASN300 LEU301
Unit 5 SER1 GLY2 LEU3 ARG4 LYS5 MET6 ALA7 GLN8 PRO9 SER10 GLY11 LEU12 VAL13 GLU14 PRO15 CYS16 ILE17 VAL18 ARG19 VAL20 SER21 TYR22 GLY23 ASN24 ASN25 VAL26 LEU27 ASN28 GLY29 LEU30 TRP31 LEU32 GLY33 ASP34 GLU35 VAL36 ILE37 CYS38 PRO39 ARG40 HIS41 VAL42 ILE43 ALA44 SER45 ASP46 THR47 THR48 ARG49 VAL50 ILE51 ASN52 TYR53 GLU54 ASN55 GLU56 MET57 SER58 SER59 VAL60 ARG61 LEU62 HIS63 ASN64 PHE65 SER66 VAL67 SER68 LYS69 ASN70 ASN71 VAL72 PHE73 LEU74 GLY75 VAL76 VAL77 SER78 ALA79 ARG80 TYR81 LYS82 GLY83 VAL84 ASN85 LEU86 VAL87 LEU88 LYS89 VAL90 ASN91 GLN92 VAL93 ASN94 PRO95 ASN96 THR97 PRO98 GLU99 HIS100 LYS101 PHE102 LYS103 SER104 ILE105 LYS106 ALA107 GLY108 GLU109 SER110 PHE111 ASN112 ILE113 LEU114 ALA115 CYS116 TYR117 GLU118 GLY119 CYS120 PRO121 GLY122 SER123 VAL124 TYR125 GLY126 VAL127 ASN128 MET129 ARG130 SER131 GLN132 GLY133 THR134 ILE135 LYS136 GLY137 SER138 PHE139 ILE140 ALA141 GLY142 THR143 CYS144 GLY145 SER146 VAL147 GLY148 TYR149 VAL150 LEU151 GLU152 ASN153 GLY154 ILE155 LEU156 TYR157 PHE158 VAL159 TYR160 MET161 HIS162 HIS163 LEU164 GLU165 LEU166 GLY167 ASN168 GLY169 SER170 HIS171 VAL172 GLY173 SER174 ASN175 PHE176 GLU177 GLY178 GLU179 MET180 TYR181 GLY182 GLY183 TYR184 GLU185 ASP186 GLN187 PRO188 SER189 MET190 GLN191 LEU192 GLU193 GLY194 THR195 ASN196 VAL197 MET198 SER199 SER200 ASP201 ASN202 VAL203 VAL204 ALA205 PHE206 LEU207 TYR208 ALA209 ALA210 LEU211 ILE212 ASN213 GLY214 GLU215 ARG216 TRP217 PHE218 VAL219 THR220 ASN221 THR222 SER223 MET224 SER225 LEU226 GLU227 SER228 TYR229 ASN230 THR231 TRP232 ALA233 LYS234 THR235 ASN236 SER237 PHE238 THR239 GLU240 LEU241 SER242 SER243 THR244 ASP245 ALA246 PHE247 SER248 MET249 LEU250 ALA251 ALA252 LYS253 THR254 GLY255 GLN256 SER257 VAL258 GLU259 LYS260 LEU261 LEU262 ASP263 SER264 ILE265 VAL266 ARG267 LEU268 ASN269 LYS270 GLY271 PHE272 GLY273 GLY274 ARG275 THR276 ILE277 LEU278 SER279 TYR280 GLY281 SER282 LEU283 CYS284 ASP285 GLU286 PHE287 THR288 PRO289 THR290 GLU291 VAL292 ILE293 ARG294 GLN295 MET296 TYR297 GLY298 VAL299
Unit 6 SER1 GLY2 LEU3 ARG4 LYS5 MET6 ALA7 GLN8 PRO9 SER10 GLY11 LEU12 VAL13 GLU14 PRO15 CYS16 ILE17 VAL18 ARG19 VAL20 SER21 TYR22 GLY23 ASN24 ASN25 VAL26 LEU27 ASN28 GLY29 LEU30 TRP31 LEU32 GLY33 ASP34 GLU35 VAL36 ILE37 CYS38 PRO39 ARG40 HIS41 VAL42 ILE43 ALA44 SER45 ASP46 THR47 THR48 ARG49 VAL50 ILE51 ASN52 TYR53 GLU54 ASN55 GLU56 MET57 SER58 SER59 VAL60 ARG61 LEU62 HIS63 ASN64 PHE65 SER66 VAL67 SER68 LYS69 ASN70 ASN71 VAL72 PHE73 LEU74 GLY75 VAL76 VAL77 SER78 ALA79 ARG80 TYR81 LYS82 GLY83 VAL84 ASN85 LEU86 VAL87 LEU88 LYS89 VAL90 ASN91 GLN92 VAL93 ASN94 PRO95 ASN96 THR97 PRO98 GLU99 HIS100 LYS101 PHE102 LYS103 SER104 ILE105 LYS106 ALA107 GLY108 GLU109 SER110 PHE111 ASN112 ILE113 LEU114 ALA115 CYS116 TYR117 GLU118 GLY119 CYS120 PRO121 GLY122 SER123 VAL124 TYR125 GLY126 VAL127 ASN128 MET129 ARG130 SER131 GLN132 GLY133 THR134 ILE135 LYS136 GLY137 SER138 PHE139 ILE140 ALA141 GLY142 THR143 CYS144 GLY145 SER146 VAL147 GLY148 TYR149 VAL150 LEU151 GLU152 ASN153 GLY154 ILE155 LEU156 TYR157 PHE158 VAL159 TYR160 MET161 HIS162 HIS163 LEU164 GLU165 LEU166 GLY167 ASN168 GLY169 SER170 HIS171 VAL172 GLY173 SER174 ASN175 PHE176 GLU177 GLY178 GLU179 MET180 TYR181 GLY182 GLY183 TYR184 GLU185 ASP186 GLN187 PRO188 SER189 MET190 GLN191 LEU192 GLU193 GLY194 THR195 ASN196 VAL197 MET198 SER199 SER200 ASP201 ASN202 VAL203 VAL204 ALA205 PHE206 LEU207 TYR208 ALA209 ALA210 LEU211 ILE212 ASN213 GLY214 GLU215 ARG216 TRP217 PHE218 VAL219 THR220 ASN221 THR222 SER223 MET224 SER225 LEU226 GLU227 SER228 TYR229 ASN230 THR231 TRP232 ALA233 LYS234 THR235 ASN236 SER237 PHE238 THR239 GLU240 LEU241 SER242 SER243 THR244 ASP245 ALA246 PHE247 SER248 MET249 LEU250 ALA251 ALA252 LYS253 THR254 GLY255 GLN256 SER257 VAL258 GLU259 LYS260 LEU261 LEU262 ASP263 SER264 ILE265 VAL266 ARG267 LEU268 ASN269 LYS270 GLY271 PHE272 GLY273 GLY274 ARG275 THR276 ILE277 LEU278 SER279 TYR280 GLY281 SER282 LEU283 CYS284 ASP285 GLU286 PHE287 THR288 PRO289 THR290 GLU291 VAL292 ILE293 ARG294 GLN295 MET296 TYR297 GLY298 VAL299
Ligands
Unit 7 DIO2004 DIO2005 DIO2006 SO43003 SO43004 SO43011 SO43022 SO43027 MRD4001
Unit 8 DIO2007 SO43006 SO43014 SO43020 SO43026 MRD4002
Unit 9 DIO2008 DIO2009 SO43001 SO43002 SO43005 SO43015 SO43023 MRD4003
Unit 10 SO43008 SO43012 SO43016 SO43017 SO43021 MRD4004
Unit 11 DIO2001 DIO2002 SO43007 SO43009 SO43013 SO43018 MRD4005
Unit 12 DIO2003 SO43010 SO43019 SO43024 SO43025 MRD4006
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany