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Sequence, Chains, Asymmetric and Biological Units

Title THE 1.9-A CRYSTAL STRUCTURE OF THE NONCOLLAGENOUS (NC1) DOMAIN OF HUMAN PLACENTA COLLAGEN IV SHOWS STABILIZATION VIA A NOVEL TYPE OF COVALENT MET-LYS CROSS-LINK
Keywords BASEMENT MEMBRANE, COLLAGEN IV, NC1 DOMAIN, COVALENT CROSS- LINK, PROTEIN-PROTEIN INTERACTION, STRUCTURAL PROTEIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1LI1     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   COLLAGEN ALPHA 1(IV)  A 228 1765 0
2  Protein   COLLAGEN ALPHA 1(IV)  B 227 1758 0
3  Protein   COLLAGEN ALPHA 2(IV)  C 224 1730 0
4  Protein   COLLAGEN ALPHA 1(IV)  D 228 1765 0
5  Protein   COLLAGEN ALPHA 1(IV)  E 227 1758 0
6  Protein   COLLAGEN ALPHA 2(IV)  F 225 1738 0
7  Ligand   COLLAGEN ALPHA 1(IV)  A 1 0 4
8  Ligand   COLLAGEN ALPHA 1(IV)  B 4 0 16
9  Ligand   COLLAGEN ALPHA 2(IV)  C 2 0 8
10  Ligand   COLLAGEN ALPHA 1(IV)  D 1 0 4
11  Ligand   COLLAGEN ALPHA 1(IV)  E 1 0 4
12 Water     1114 0 1114
total       2482 10514 1150
Proteins
Unit 1 VAL2 ASP3 HIS4 GLY5 PHE6 LEU7 VAL8 THR9 ARG10 HIS11 SER12 GLN13 THR14 ILE15 ASP16 ASP17 PRO18 GLN19 CYS20 PRO21 SER22 GLY23 THR24 LYS25 ILE26 LEU27 TYR28 HIS29 GLY30 TYR31 SER32 LEU33 LEU34 TYR35 VAL36 GLN37 GLY38 ASN39 GLU40 ARG41 ALA42 HIS43 GLY44 GLN45 ASP46 LEU47 GLY48 THR49 ALA50 GLY51 SER52 CYS53 LEU54 ARG55 LYS56 PHE57 SER58 THR59 MET60 PRO61 PHE62 LEU63 PHE64 CYS65 ASN66 ILE67 ASN68 ASN69 VAL70 CYS71 ASN72 PHE73 ALA74 SER75 ARG76 ASN77 ASP78 TYR79 SER80 TYR81 TRP82 LEU83 SER84 THR85 PRO86 GLU87 PRO88 MET89 PRO90 MET91 SER92 MET93 ALA94 PRO95 ILE96 THR97 GLY98 GLU99 ASN100 ILE101 ARG102 PRO103 PHE104 ILE105 SER106 ARG107 CYS108 ALA109 VAL110 CYS111 GLU112 ALA113 PRO114 ALA115 MET116 VAL117 MET118 ALA119 VAL120 HIS121 SER122 GLN123 THR124 ILE125 GLN126 ILE127 PRO128 PRO129 CYS130 PRO131 SER132 GLY133 TRP134 SER135 SER136 LEU137 TRP138 ILE139 GLY140 TYR141 SER142 PHE143 VAL144 MET145 HIS146 THR147 SER148 ALA149 GLY150 ALA151 GLU152 GLY153 SER154 GLY155 GLN156 ALA157 LEU158 ALA159 SER160 PRO161 GLY162 SER163 CYS164 LEU165 GLU166 GLU167 PHE168 ARG169 SER170 ALA171 PRO172 PHE173 ILE174 GLU175 CYS176 HIS177 GLY178 ARG179 GLY180 THR181 CYS182 ASN183 TYR184 TYR185 ALA186 ASN187 ALA188 TYR189 SER190 PHE191 TRP192 LEU193 ALA194 THR195 ILE196 GLU197 ARG198 SER199 GLU200 MET201 PHE202 LYS203 LYS204 PRO205 THR206 PRO207 SER208 THR209 LEU210 LYS211 ALA212 GLY213 GLU214 LEU215 ARG216 THR217 HIS218 VAL219 SER220 ARG221 CYS222 GLN223 VAL224 CYS225 MET226 ARG227 ARG228 THR229
Unit 2 ASP3 HIS4 GLY5 PHE6 LEU7 VAL8 THR9 ARG10 HIS11 SER12 GLN13 THR14 ILE15 ASP16 ASP17 PRO18 GLN19 CYS20 PRO21 SER22 GLY23 THR24 LYS25 ILE26 LEU27 TYR28 HIS29 GLY30 TYR31 SER32 LEU33 LEU34 TYR35 VAL36 GLN37 GLY38 ASN39 GLU40 ARG41 ALA42 HIS43 GLY44 GLN45 ASP46 LEU47 GLY48 THR49 ALA50 GLY51 SER52 CYS53 LEU54 ARG55 LYS56 PHE57 SER58 THR59 MET60 PRO61 PHE62 LEU63 PHE64 CYS65 ASN66 ILE67 ASN68 ASN69 VAL70 CYS71 ASN72 PHE73 ALA74 SER75 ARG76 ASN77 ASP78 TYR79 SER80 TYR81 TRP82 LEU83 SER84 THR85 PRO86 GLU87 PRO88 MET89 PRO90 MET91 SER92 MET93 ALA94 PRO95 ILE96 THR97 GLY98 GLU99 ASN100 ILE101 ARG102 PRO103 PHE104 ILE105 SER106 ARG107 CYS108 ALA109 VAL110 CYS111 GLU112 ALA113 PRO114 ALA115 MET116 VAL117 MET118 ALA119 VAL120 HIS121 SER122 GLN123 THR124 ILE125 GLN126 ILE127 PRO128 PRO129 CYS130 PRO131 SER132 GLY133 TRP134 SER135 SER136 LEU137 TRP138 ILE139 GLY140 TYR141 SER142 PHE143 VAL144 MET145 HIS146 THR147 SER148 ALA149 GLY150 ALA151 GLU152 GLY153 SER154 GLY155 GLN156 ALA157 LEU158 ALA159 SER160 PRO161 GLY162 SER163 CYS164 LEU165 GLU166 GLU167 PHE168 ARG169 SER170 ALA171 PRO172 PHE173 ILE174 GLU175 CYS176 HIS177 GLY178 ARG179 GLY180 THR181 CYS182 ASN183 TYR184 TYR185 ALA186 ASN187 ALA188 TYR189 SER190 PHE191 TRP192 LEU193 ALA194 THR195 ILE196 GLU197 ARG198 SER199 GLU200 MET201 PHE202 LYS203 LYS204 PRO205 THR206 PRO207 SER208 THR209 LEU210 LYS211 ALA212 GLY213 GLU214 LEU215 ARG216 THR217 HIS218 VAL219 SER220 ARG221 CYS222 GLN223 VAL224 CYS225 MET226 ARG227 ARG228 THR229
Unit 3 GLY5 TYR6 LEU7 LEU8 VAL9 LYS10 HIS11 SER12 GLN13 THR14 ASP15 GLN16 GLU17 PRO18 MET19 CYS20 PRO21 VAL22 GLY23 MET24 ASN25 LYS26 LEU27 TRP28 SER29 GLY30 TYR31 SER32 LEU33 LEU34 TYR35 PHE36 GLU37 GLY38 GLN39 GLU40 LYS41 ALA42 HIS43 ASN44 GLN45 ASP46 LEU47 GLY48 LEU49 ALA50 GLY51 SER52 CYS53 LEU54 ALA55 ARG56 PHE57 SER58 THR59 MET60 PRO61 PHE62 LEU63 TYR64 CYS65 ASN66 PRO67 GLY68 ASP69 VAL70 CYS71 TYR72 TYR73 ALA74 SER75 ARG76 ASN77 ASP78 LYS79 SER80 TYR81 TRP82 LEU83 SER84 THR85 THR86 ALA87 PRO88 LEU89 PRO90 MET93 MET94 PRO95 VAL96 ALA97 GLU98 ASP99 GLU100 ILE101 LYS102 PRO103 TYR104 ILE105 SER106 ARG107 CYS108 SER109 VAL110 CYS111 GLU112 ALA113 PRO114 ALA115 ILE116 ALA117 ILE118 ALA119 VAL120 HIS121 SER122 GLN123 ASP124 VAL125 SER126 ILE127 PRO128 HIS129 CYS130 PRO131 ALA132 GLY133 TRP134 ARG135 SER136 LEU137 TRP138 ILE139 GLY140 TYR141 SER142 PHE143 LEU144 MET145 HIS146 THR147 ALA148 ALA149 GLY150 ASP151 GLU152 GLY153 GLY154 GLY155 GLN156 SER157 LEU158 VAL159 SER160 PRO161 GLY162 SER163 CYS164 LEU165 GLU166 ASP167 PHE168 ARG169 ALA170 THR171 PRO172 PHE173 ILE174 GLU175 CYS176 ASN177 GLY177A GLY178 ARG179 GLY180 THR181 CYS182 HIS183 TYR184 TYR185 ALA186 ASN187 LYS188 TYR189 SER190 PHE191 TRP192 LEU193 THR194 THR195 ILE196 PRO197 GLU198 GLN199 SER200 PHE201 GLN202 GLY203 SER204 PRO205 SER206 ALA207 ASP208 THR209 LEU210 LYS211 ALA212 GLY213 LEU214 ILE215 ARG216 THR217 HIS218 ILE219 SER220 ARG221 CYS222 GLN223 VAL224 CYS225 MET226 LYS227 ASN228 LEU229
Unit 4 VAL2 ASP3 HIS4 GLY5 PHE6 LEU7 VAL8 THR9 ARG10 HIS11 SER12 GLN13 THR14 ILE15 ASP16 ASP17 PRO18 GLN19 CYS20 PRO21 SER22 GLY23 THR24 LYS25 ILE26 LEU27 TYR28 HIS29 GLY30 TYR31 SER32 LEU33 LEU34 TYR35 VAL36 GLN37 GLY38 ASN39 GLU40 ARG41 ALA42 HIS43 GLY44 GLN45 ASP46 LEU47 GLY48 THR49 ALA50 GLY51 SER52 CYS53 LEU54 ARG55 LYS56 PHE57 SER58 THR59 MET60 PRO61 PHE62 LEU63 PHE64 CYS65 ASN66 ILE67 ASN68 ASN69 VAL70 CYS71 ASN72 PHE73 ALA74 SER75 ARG76 ASN77 ASP78 TYR79 SER80 TYR81 TRP82 LEU83 SER84 THR85 PRO86 GLU87 PRO88 MET89 PRO90 MET91 SER92 MET93 ALA94 PRO95 ILE96 THR97 GLY98 GLU99 ASN100 ILE101 ARG102 PRO103 PHE104 ILE105 SER106 ARG107 CYS108 ALA109 VAL110 CYS111 GLU112 ALA113 PRO114 ALA115 MET116 VAL117 MET118 ALA119 VAL120 HIS121 SER122 GLN123 THR124 ILE125 GLN126 ILE127 PRO128 PRO129 CYS130 PRO131 SER132 GLY133 TRP134 SER135 SER136 LEU137 TRP138 ILE139 GLY140 TYR141 SER142 PHE143 VAL144 MET145 HIS146 THR147 SER148 ALA149 GLY150 ALA151 GLU152 GLY153 SER154 GLY155 GLN156 ALA157 LEU158 ALA159 SER160 PRO161 GLY162 SER163 CYS164 LEU165 GLU166 GLU167 PHE168 ARG169 SER170 ALA171 PRO172 PHE173 ILE174 GLU175 CYS176 HIS177 GLY178 ARG179 GLY180 THR181 CYS182 ASN183 TYR184 TYR185 ALA186 ASN187 ALA188 TYR189 SER190 PHE191 TRP192 LEU193 ALA194 THR195 ILE196 GLU197 ARG198 SER199 GLU200 MET201 PHE202 LYS203 LYS204 PRO205 THR206 PRO207 SER208 THR209 LEU210 LYS211 ALA212 GLY213 GLU214 LEU215 ARG216 THR217 HIS218 VAL219 SER220 ARG221 CYS222 GLN223 VAL224 CYS225 MET226 ARG227 ARG228 THR229
Unit 5 ASP3 HIS4 GLY5 PHE6 LEU7 VAL8 THR9 ARG10 HIS11 SER12 GLN13 THR14 ILE15 ASP16 ASP17 PRO18 GLN19 CYS20 PRO21 SER22 GLY23 THR24 LYS25 ILE26 LEU27 TYR28 HIS29 GLY30 TYR31 SER32 LEU33 LEU34 TYR35 VAL36 GLN37 GLY38 ASN39 GLU40 ARG41 ALA42 HIS43 GLY44 GLN45 ASP46 LEU47 GLY48 THR49 ALA50 GLY51 SER52 CYS53 LEU54 ARG55 LYS56 PHE57 SER58 THR59 MET60 PRO61 PHE62 LEU63 PHE64 CYS65 ASN66 ILE67 ASN68 ASN69 VAL70 CYS71 ASN72 PHE73 ALA74 SER75 ARG76 ASN77 ASP78 TYR79 SER80 TYR81 TRP82 LEU83 SER84 THR85 PRO86 GLU87 PRO88 MET89 PRO90 MET91 SER92 MET93 ALA94 PRO95 ILE96 THR97 GLY98 GLU99 ASN100 ILE101 ARG102 PRO103 PHE104 ILE105 SER106 ARG107 CYS108 ALA109 VAL110 CYS111 GLU112 ALA113 PRO114 ALA115 MET116 VAL117 MET118 ALA119 VAL120 HIS121 SER122 GLN123 THR124 ILE125 GLN126 ILE127 PRO128 PRO129 CYS130 PRO131 SER132 GLY133 TRP134 SER135 SER136 LEU137 TRP138 ILE139 GLY140 TYR141 SER142 PHE143 VAL144 MET145 HIS146 THR147 SER148 ALA149 GLY150 ALA151 GLU152 GLY153 SER154 GLY155 GLN156 ALA157 LEU158 ALA159 SER160 PRO161 GLY162 SER163 CYS164 LEU165 GLU166 GLU167 PHE168 ARG169 SER170 ALA171 PRO172 PHE173 ILE174 GLU175 CYS176 HIS177 GLY178 ARG179 GLY180 THR181 CYS182 ASN183 TYR184 TYR185 ALA186 ASN187 ALA188 TYR189 SER190 PHE191 TRP192 LEU193 ALA194 THR195 ILE196 GLU197 ARG198 SER199 GLU200 MET201 PHE202 LYS203 LYS204 PRO205 THR206 PRO207 SER208 THR209 LEU210 LYS211 ALA212 GLY213 GLU214 LEU215 ARG216 THR217 HIS218 VAL219 SER220 ARG221 CYS222 GLN223 VAL224 CYS225 MET226 ARG227 ARG228 THR229
Unit 6 ILE4 GLY5 TYR6 LEU7 LEU8 VAL9 LYS10 HIS11 SER12 GLN13 THR14 ASP15 GLN16 GLU17 PRO18 MET19 CYS20 PRO21 VAL22 GLY23 MET24 ASN25 LYS26 LEU27 TRP28 SER29 GLY30 TYR31 SER32 LEU33 LEU34 TYR35 PHE36 GLU37 GLY38 GLN39 GLU40 LYS41 ALA42 HIS43 ASN44 GLN45 ASP46 LEU47 GLY48 LEU49 ALA50 GLY51 SER52 CYS53 LEU54 ALA55 ARG56 PHE57 SER58 THR59 MET60 PRO61 PHE62 LEU63 TYR64 CYS65 ASN66 PRO67 GLY68 ASP69 VAL70 CYS71 TYR72 TYR73 ALA74 SER75 ARG76 ASN77 ASP78 LYS79 SER80 TYR81 TRP82 LEU83 SER84 THR85 THR86 ALA87 PRO88 LEU89 PRO90 MET93 MET94 PRO95 VAL96 ALA97 GLU98 ASP99 GLU100 ILE101 LYS102 PRO103 TYR104 ILE105 SER106 ARG107 CYS108 SER109 VAL110 CYS111 GLU112 ALA113 PRO114 ALA115 ILE116 ALA117 ILE118 ALA119 VAL120 HIS121 SER122 GLN123 ASP124 VAL125 SER126 ILE127 PRO128 HIS129 CYS130 PRO131 ALA132 GLY133 TRP134 ARG135 SER136 LEU137 TRP138 ILE139 GLY140 TYR141 SER142 PHE143 LEU144 MET145 HIS146 THR147 ALA148 ALA149 GLY150 ASP151 GLU152 GLY153 GLY154 GLY155 GLN156 SER157 LEU158 VAL159 SER160 PRO161 GLY162 SER163 CYS164 LEU165 GLU166 ASP167 PHE168 ARG169 ALA170 THR171 PRO172 PHE173 ILE174 GLU175 CYS176 ASN177 GLY177A GLY178 ARG179 GLY180 THR181 CYS182 HIS183 TYR184 TYR185 ALA186 ASN187 LYS188 TYR189 SER190 PHE191 TRP192 LEU193 THR194 THR195 ILE196 PRO197 GLU198 GLN199 SER200 PHE201 GLN202 GLY203 SER204 PRO205 SER206 ALA207 ASP208 THR209 LEU210 LYS211 ALA212 GLY213 LEU214 ILE215 ARG216 THR217 HIS218 ILE219 SER220 ARG221 CYS222 GLN223 VAL224 CYS225 MET226 LYS227 ASN228 LEU229
Ligands
Unit 7 ACT2009
Unit 8 ACT2002 ACT2003 ACT2006 ACT2007
Unit 9 ACT2004 ACT2005
Unit 10 ACT2008
Unit 11 ACT2001
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany