1J3L - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURE OF THE RNA-PROCESSING INHIBITOR RRAA FROM THERMUS THERMOPHILIS
• Keywords: VITAMINE K2, STRUCTURAL GENOMICS, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSFERASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	1J3L	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	DEMETHYLMENAQUINONE METHYLTRANSFERASE	A	164	1216	8
2	Protein	DEMETHYLMENAQUINONE METHYLTRANSFERASE	B	164	1215	8
3	Protein	DEMETHYLMENAQUINONE METHYLTRANSFERASE	C	161	1203	8
4	Protein	DEMETHYLMENAQUINONE METHYLTRANSFERASE	D	164	1218	8
5	Protein	DEMETHYLMENAQUINONE METHYLTRANSFERASE	E	164	1218	8
6	Protein	DEMETHYLMENAQUINONE METHYLTRANSFERASE	F	157	1173	8
7	Ligand	DEMETHYLMENAQUINONE METHYLTRANSFERASE	A	2	0	2
8	Ligand	DEMETHYLMENAQUINONE METHYLTRANSFERASE	B	1	0	1
9	Water			398	0	398
total				1375	7243	449

Proteins

Unit 1	MET 1 GLU 2 ALA 3 ARG 4 THR 5 THR 6 ASP 7 LEU 8 SER 9 ASP 10 LEU 11 TYR 12 PRO 13 GLU 14 GLY 15 GLU 16 ALA 17 LEU 18 PRO 19 MSE 20 VAL 21 PHE 22 LYS 23 SER 24 PHE 25 GLY 26 GLY 27 ARG 28 ALA 29 ARG 30 PHE 31 ALA 32 GLY 33 ARG 34 VAL 35 ARG 36 THR 37 LEU 38 ARG 39 VAL 40 PHE 41 GLU 42 ASP 43 ASN 44 ALA 45 LEU 46 VAL 47 ARG 48 LYS 49 VAL 50 LEU 51 GLU 52 GLU 53 GLU 54 GLY 55 ALA 56 GLY 57 GLN 58 VAL 59 LEU 60 PHE 61 VAL 62 ASP 63 GLY 64 GLY 65 GLY 66 SER 67 LEU 68 ARG 69 THR 70 ALA 71 LEU 72 LEU 73 GLY 74 GLY 75 ASN 76 LEU 77 ALA 78 ARG 79 ARG 80 ALA 81 TRP 82 GLU 83 LYS 84 GLY 85 TRP 86 ALA 87 GLY 88 VAL 89 VAL 90 VAL 91 HIS 92 GLY 93 ALA 94 VAL 95 ARG 96 ASP 97 THR 98 GLU 99 GLU 100 LEU 101 ARG 102 GLU 103 VAL 104 PRO 105 ILE 106 GLY 107 LEU 108 LEU 109 ALA 110 LEU 111 ALA 112 ALA 113 THR 114 PRO 115 LYS 116 LYS 117 SER 118 ALA 119 LYS 120 GLU 121 GLY 122 LYS 123 GLY 124 GLU 125 VAL 126 ASP 127 VAL 128 PRO 129 LEU 130 LYS 131 VAL 132 LEU 133 GLY 134 VAL 135 GLU 136 VAL 137 LEU 138 PRO 139 GLY 140 SER 141 PHE 142 LEU 143 LEU 144 ALA 145 ASP 146 GLU 147 ASP 148 GLY 149 LEU 150 LEU 151 LEU 152 LEU 153 PRO 154 GLU 155 PRO 156 PRO 157 SER 158 GLY 159 VAL 160 ARG 161 SER 162 GLY 163 GLY 164
Unit 2	MET 1 GLU 2 ALA 3 ARG 4 THR 5 THR 6 ASP 7 LEU 8 SER 9 ASP 10 LEU 11 TYR 12 PRO 13 GLU 14 GLY 15 GLU 16 ALA 17 LEU 18 PRO 19 MSE 20 VAL 21 PHE 22 LYS 23 SER 24 PHE 25 GLY 26 GLY 27 ARG 28 ALA 29 ARG 30 PHE 31 ALA 32 GLY 33 ARG 34 VAL 35 ARG 36 THR 37 LEU 38 ARG 39 VAL 40 PHE 41 GLU 42 ASP 43 ASN 44 ALA 45 LEU 46 VAL 47 ARG 48 LYS 49 VAL 50 LEU 51 GLU 52 GLU 53 GLU 54 GLY 55 ALA 56 GLY 57 GLN 58 VAL 59 LEU 60 PHE 61 VAL 62 ASP 63 GLY 64 GLY 65 GLY 66 SER 67 LEU 68 ARG 69 THR 70 ALA 71 LEU 72 LEU 73 GLY 74 GLY 75 ASN 76 LEU 77 ALA 78 ARG 79 ARG 80 ALA 81 TRP 82 GLU 83 LYS 84 GLY 85 TRP 86 ALA 87 GLY 88 VAL 89 VAL 90 VAL 91 HIS 92 GLY 93 ALA 94 VAL 95 ARG 96 ASP 97 THR 98 GLU 99 GLU 100 LEU 101 ARG 102 GLU 103 VAL 104 PRO 105 ILE 106 GLY 107 LEU 108 LEU 109 ALA 110 LEU 111 ALA 112 ALA 113 THR 114 PRO 115 LYS 116 LYS 117 SER 118 ALA 119 LYS 120 GLU 121 GLY 122 LYS 123 GLY 124 GLU 125 VAL 126 ASP 127 VAL 128 PRO 129 LEU 130 LYS 131 VAL 132 LEU 133 GLY 134 VAL 135 GLU 136 VAL 137 LEU 138 PRO 139 GLY 140 SER 141 PHE 142 LEU 143 LEU 144 ALA 145 ASP 146 GLU 147 ASP 148 GLY 149 LEU 150 LEU 151 LEU 152 LEU 153 PRO 154 GLU 155 PRO 156 PRO 157 SER 158 GLY 159 VAL 160 ARG 161 SER 162 GLY 163 GLY 164
Unit 3	MET 1 GLU 2 ALA 3 ARG 4 THR 5 THR 6 ASP 7 LEU 8 SER 9 ASP 10 LEU 11 TYR 12 PRO 13 GLU 14 GLY 15 GLU 16 ALA 17 LEU 18 PRO 19 MSE 20 VAL 21 PHE 22 LYS 23 SER 24 PHE 25 GLY 26 GLY 27 ARG 28 ALA 29 ARG 30 PHE 31 ALA 32 GLY 33 ARG 34 VAL 35 ARG 36 THR 37 LEU 38 ARG 39 VAL 40 PHE 41 GLU 42 ASP 43 ASN 44 ALA 45 LEU 46 VAL 47 ARG 48 LYS 49 VAL 50 LEU 51 GLU 52 GLU 53 GLU 54 GLY 55 ALA 56 GLY 57 GLN 58 VAL 59 LEU 60 PHE 61 VAL 62 ASP 63 GLY 64 GLY 65 GLY 66 SER 67 LEU 68 ARG 69 THR 70 ALA 71 LEU 72 LEU 73 GLY 74 GLY 75 ASN 76 LEU 77 ALA 78 ARG 79 ARG 80 ALA 81 TRP 82 GLU 83 LYS 84 GLY 85 TRP 86 ALA 87 GLY 88 VAL 89 VAL 90 VAL 91 HIS 92 GLY 93 ALA 94 VAL 95 ARG 96 ASP 97 THR 98 GLU 99 GLU 100 LEU 101 ARG 102 GLU 103 VAL 104 PRO 105 ILE 106 GLY 107 LEU 108 LEU 109 ALA 110 LEU 111 ALA 112 ALA 113 THR 114 PRO 115 LYS 116 LYS 117 SER 118 ALA 119 LYS 120 GLU 121 GLY 122 LYS 123 GLY 124 GLU 125 VAL 126 ASP 127 VAL 128 PRO 129 LEU 130 LYS 131 VAL 132 LEU 133 GLY 134 VAL 135 GLU 136 VAL 137 LEU 138 PRO 139 GLY 140 SER 141 PHE 142 LEU 143 LEU 144 ALA 145 ASP 146 GLU 147 ASP 148 GLY 149 LEU 150 LEU 151 LEU 152 LEU 153 PRO 154 GLU 155 PRO 156 PRO 157 SER 158 GLY 159 VAL 160 ARG 161
Unit 4	MET 1 GLU 2 ALA 3 ARG 4 THR 5 THR 6 ASP 7 LEU 8 SER 9 ASP 10 LEU 11 TYR 12 PRO 13 GLU 14 GLY 15 GLU 16 ALA 17 LEU 18 PRO 19 MSE 20 VAL 21 PHE 22 LYS 23 SER 24 PHE 25 GLY 26 GLY 27 ARG 28 ALA 29 ARG 30 PHE 31 ALA 32 GLY 33 ARG 34 VAL 35 ARG 36 THR 37 LEU 38 ARG 39 VAL 40 PHE 41 GLU 42 ASP 43 ASN 44 ALA 45 LEU 46 VAL 47 ARG 48 LYS 49 VAL 50 LEU 51 GLU 52 GLU 53 GLU 54 GLY 55 ALA 56 GLY 57 GLN 58 VAL 59 LEU 60 PHE 61 VAL 62 ASP 63 GLY 64 GLY 65 GLY 66 SER 67 LEU 68 ARG 69 THR 70 ALA 71 LEU 72 LEU 73 GLY 74 GLY 75 ASN 76 LEU 77 ALA 78 ARG 79 ARG 80 ALA 81 TRP 82 GLU 83 LYS 84 GLY 85 TRP 86 ALA 87 GLY 88 VAL 89 VAL 90 VAL 91 HIS 92 GLY 93 ALA 94 VAL 95 ARG 96 ASP 97 THR 98 GLU 99 GLU 100 LEU 101 ARG 102 GLU 103 VAL 104 PRO 105 ILE 106 GLY 107 LEU 108 LEU 109 ALA 110 LEU 111 ALA 112 ALA 113 THR 114 PRO 115 LYS 116 LYS 117 SER 118 ALA 119 LYS 120 GLU 121 GLY 122 LYS 123 GLY 124 GLU 125 VAL 126 ASP 127 VAL 128 PRO 129 LEU 130 LYS 131 VAL 132 LEU 133 GLY 134 VAL 135 GLU 136 VAL 137 LEU 138 PRO 139 GLY 140 SER 141 PHE 142 LEU 143 LEU 144 ALA 145 ASP 146 GLU 147 ASP 148 GLY 149 LEU 150 LEU 151 LEU 152 LEU 153 PRO 154 GLU 155 PRO 156 PRO 157 SER 158 GLY 159 VAL 160 ARG 161 SER 162 GLY 163 GLY 164
Unit 5	MET 1 GLU 2 ALA 3 ARG 4 THR 5 THR 6 ASP 7 LEU 8 SER 9 ASP 10 LEU 11 TYR 12 PRO 13 GLU 14 GLY 15 GLU 16 ALA 17 LEU 18 PRO 19 MSE 20 VAL 21 PHE 22 LYS 23 SER 24 PHE 25 GLY 26 GLY 27 ARG 28 ALA 29 ARG 30 PHE 31 ALA 32 GLY 33 ARG 34 VAL 35 ARG 36 THR 37 LEU 38 ARG 39 VAL 40 PHE 41 GLU 42 ASP 43 ASN 44 ALA 45 LEU 46 VAL 47 ARG 48 LYS 49 VAL 50 LEU 51 GLU 52 GLU 53 GLU 54 GLY 55 ALA 56 GLY 57 GLN 58 VAL 59 LEU 60 PHE 61 VAL 62 ASP 63 GLY 64 GLY 65 GLY 66 SER 67 LEU 68 ARG 69 THR 70 ALA 71 LEU 72 LEU 73 GLY 74 GLY 75 ASN 76 LEU 77 ALA 78 ARG 79 ARG 80 ALA 81 TRP 82 GLU 83 LYS 84 GLY 85 TRP 86 ALA 87 GLY 88 VAL 89 VAL 90 VAL 91 HIS 92 GLY 93 ALA 94 VAL 95 ARG 96 ASP 97 THR 98 GLU 99 GLU 100 LEU 101 ARG 102 GLU 103 VAL 104 PRO 105 ILE 106 GLY 107 LEU 108 LEU 109 ALA 110 LEU 111 ALA 112 ALA 113 THR 114 PRO 115 LYS 116 LYS 117 SER 118 ALA 119 LYS 120 GLU 121 GLY 122 LYS 123 GLY 124 GLU 125 VAL 126 ASP 127 VAL 128 PRO 129 LEU 130 LYS 131 VAL 132 LEU 133 GLY 134 VAL 135 GLU 136 VAL 137 LEU 138 PRO 139 GLY 140 SER 141 PHE 142 LEU 143 LEU 144 ALA 145 ASP 146 GLU 147 ASP 148 GLY 149 LEU 150 LEU 151 LEU 152 LEU 153 PRO 154 GLU 155 PRO 156 PRO 157 SER 158 GLY 159 VAL 160 ARG 161 SER 162 GLY 163 GLY 164
Unit 6	MET 1 GLU 2 ALA 3 ARG 4 THR 5 THR 6 ASP 7 LEU 8 SER 9 ASP 10 LEU 11 TYR 12 PRO 13 GLU 14 GLY 15 GLU 16 ALA 17 LEU 18 PRO 19 MSE 20 VAL 21 PHE 22 LYS 23 SER 24 PHE 25 GLY 26 GLY 27 ARG 28 ALA 29 ARG 30 PHE 31 ALA 32 GLY 33 ARG 34 VAL 35 ARG 36 THR 37 LEU 38 ARG 39 VAL 40 PHE 41 GLU 42 ASP 43 ASN 44 ALA 45 LEU 46 VAL 47 ARG 48 LYS 49 VAL 50 LEU 51 GLU 52 GLU 53 GLU 54 GLY 55 ALA 56 GLY 57 GLN 58 VAL 59 LEU 60 PHE 61 VAL 62 ASP 63 GLY 64 GLY 65 GLY 66 SER 67 LEU 68 ARG 69 THR 70 ALA 71 LEU 72 LEU 73 GLY 74 GLY 75 ASN 76 LEU 77 ALA 78 ARG 79 ARG 80 ALA 81 TRP 82 GLU 83 LYS 84 GLY 85 TRP 86 ALA 87 GLY 88 VAL 89 VAL 90 VAL 91 HIS 92 GLY 93 ALA 94 VAL 95 ARG 96 ASP 97 THR 98 GLU 99 GLU 100 LEU 101 ARG 102 GLU 103 VAL 104 PRO 105 ILE 106 GLY 107 LEU 108 LEU 109 ALA 110 LEU 111 ALA 112 ALA 113 THR 114 PRO 115 LYS 116 LYS 117 SER 118 ALA 119 LYS 120 GLU 121 GLY 122 LYS 123 GLY 124 GLU 125 VAL 126 ASP 127 VAL 128 PRO 129 LEU 130 LYS 131 VAL 132 LEU 133 GLY 134 VAL 135 GLU 136 VAL 137 LEU 138 PRO 139 GLY 140 SER 141 PHE 142 LEU 143 LEU 144 ALA 145 ASP 146 GLU 147 ASP 148 GLY 149 LEU 150 LEU 151 LEU 152 LEU 153 PRO 154 GLU 155 PRO 156 PRO 157

Ligands

Unit 7	MG 1001 CL 1002
Unit 8	CL 1003