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Sequence, Chains, Asymmetric and Biological Units

Title TERNARY COMPLEX OF PHOSPHOGLYCERATE KINASE FROM TRYPANOSOMA BRUCEI
Keywords KINASE, PHOSPHOGLYCERATE, TERNARY COMPLEX, GLYCOLYSIS, TRANSFERASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   13PK     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   3-PHOSPHOGLYCERATE KINASE  A 415 3127 0
2  Protein   3-PHOSPHOGLYCERATE KINASE  B 415 3127 0
3  Protein   3-PHOSPHOGLYCERATE KINASE  C 415 3127 0
4  Protein   3-PHOSPHOGLYCERATE KINASE  D 415 3127 0
5  Ligand   3-PHOSPHOGLYCERATE KINASE  A 5 0 49
6  Ligand   3-PHOSPHOGLYCERATE KINASE  B 3 0 39
7  Ligand   3-PHOSPHOGLYCERATE KINASE  C 5 0 43
8  Ligand   3-PHOSPHOGLYCERATE KINASE  D 3 0 33
9 Water     599 0 599
total       2275 12508 763

Proteins
Unit 1 GLU5 LYS6 LYS7 SER8 ILE9 ASN10 GLU11 CYS12 ASP13 LEU14 LYS15 GLY16 LYS17 LYS18 VAL19 LEU20 ILE21 ARG22 VAL23 ASP24 PHE25 ASN26 VAL27 PRO28 VAL29 LYS30 ASN31 GLY32 LYS33 ILE34 THR35 ASN36 ASP37 TYR38 ARG39 ILE40 ARG41 SER42 ALA43 LEU44 PRO45 THR46 LEU47 LYS48 LYS49 VAL50 LEU51 THR52 GLU53 GLY54 GLY55 SER56 CYS57 VAL58 LEU59 MET60 SER61 HIS62 LEU63 GLY64 ARG65 PRO66 LYS67 GLY68 ILE69 PRO70 MET71 ALA72 GLN73 ALA74 GLY75 LYS76 ILE77 ARG78 SER79 THR80 GLY81 GLY82 VAL83 PRO84 GLY85 PHE86 GLN87 GLN88 LYS89 ALA90 THR91 LEU92 LYS93 PRO94 VAL95 ALA96 LYS97 ARG98 LEU99 SER100 GLU101 LEU102 LEU103 LEU104 ARG105 PRO106 VAL107 THR108 PHE109 ALA110 PRO111 ASP112 CYS113 LEU114 ASN115 ALA116 ALA117 ASP118 VAL119 VAL120 SER121 LYS122 MET123 SER124 PRO125 GLY126 ASP127 VAL128 VAL129 LEU130 LEU131 GLU132 ASN133 VAL134 ARG135 PHE136 TYR137 LYS138 GLU139 GLU140 GLY141 SER142 LYS143 LYS144 ALA145 LYS146 ASP147 ARG148 GLU149 ALA150 MET151 ALA152 LYS153 ILE154 LEU155 ALA156 SER157 TYR158 GLY159 ASP160 VAL161 TYR162 ILE163 SER164 ASP165 ALA166 PHE167 GLY168 THR169 ALA170 HIS171 ARG172 ASP173 SER174 ALA175 THR176 MET177 THR178 GLY179 ILE180 PRO181 LYS182 ILE183 LEU184 GLY185 ASN186 GLY187 ALA188 ALA189 GLY190 TYR191 LEU192 MET193 GLU194 LYS195 GLU196 ILE197 SER198 TYR199 PHE200 ALA201 LYS202 VAL203 LEU204 GLY205 ASN206 PRO207 PRO208 ARG209 PRO210 LEU211 VAL212 ALA213 ILE214 VAL215 GLY216 GLY217 ALA218 LYS219 VAL220 SER221 ASP222 LYS223 ILE224 GLN225 LEU226 LEU227 ASP228 ASN229 MET230 LEU231 GLN232 ARG233 ILE234 ASP235 TYR236 LEU237 LEU238 ILE239 GLY240 GLY241 ALA242 MET243 ALA244 TYR245 THR246 PHE247 LEU248 LYS249 ALA250 GLN251 GLY252 TYR253 SER254 ILE255 GLY256 LYS257 SER258 LYS259 CYS260 GLU261 GLU262 SER263 LYS264 LEU265 GLU266 PHE267 ALA268 ARG269 SER270 LEU271 LEU272 LYS273 LYS274 ALA275 GLU276 ASP277 ARG278 LYS279 VAL280 GLN281 VAL282 ILE283 LEU284 PRO285 ILE286 ASP287 HIS288 VAL289 CYS290 HIS291 THR292 GLU293 PHE294 LYS295 ALA296 VAL297 ASP298 SER299 PRO300 LEU301 ILE302 THR303 GLU304 ASP305 GLN306 ASN307 ILE308 PRO309 GLU310 GLY311 HIS312 MET313 ALA314 LEU315 ASP316 ILE317 GLY318 PRO319 LYS320 THR321 ILE322 GLU323 LYS324 TYR325 VAL326 GLN327 THR328 ILE329 GLY330 LYS331 CYS332 LYS333 SER334 ALA335 ILE336 TRP337 ASN338 GLY339 PRO340 MET341 GLY342 VAL343 PHE344 GLU345 MET346 VAL347 PRO348 TYR349 SER350 LYS351 GLY352 THR353 PHE354 ALA355 ILE356 ALA357 LYS358 ALA359 MET360 GLY361 ARG362 GLY363 THR364 HIS365 GLU366 HIS367 GLY368 LEU369 MET370 SER371 ILE372 ILE373 GLY374 GLY375 GLY376 ASP377 SER378 ALA379 SER380 ALA381 ALA382 GLU383 LEU384 SER385 GLY386 GLU387 ALA388 LYS389 ARG390 MET391 SER392 HIS393 VAL394 SER395 THR396 GLY397 GLY398 GLY399 ALA400 SER401 LEU402 GLU403 LEU404 LEU405 GLU406 GLY407 LYS408 THR409 LEU410 PRO411 GLY412 VAL413 THR414 VAL415 LEU416 ASP417 ASP418 LYS419
Unit 2 GLU5 LYS6 LYS7 SER8 ILE9 ASN10 GLU11 CYS12 ASP13 LEU14 LYS15 GLY16 LYS17 LYS18 VAL19 LEU20 ILE21 ARG22 VAL23 ASP24 PHE25 ASN26 VAL27 PRO28 VAL29 LYS30 ASN31 GLY32 LYS33 ILE34 THR35 ASN36 ASP37 TYR38 ARG39 ILE40 ARG41 SER42 ALA43 LEU44 PRO45 THR46 LEU47 LYS48 LYS49 VAL50 LEU51 THR52 GLU53 GLY54 GLY55 SER56 CYS57 VAL58 LEU59 MET60 SER61 HIS62 LEU63 GLY64 ARG65 PRO66 LYS67 GLY68 ILE69 PRO70 MET71 ALA72 GLN73 ALA74 GLY75 LYS76 ILE77 ARG78 SER79 THR80 GLY81 GLY82 VAL83 PRO84 GLY85 PHE86 GLN87 GLN88 LYS89 ALA90 THR91 LEU92 LYS93 PRO94 VAL95 ALA96 LYS97 ARG98 LEU99 SER100 GLU101 LEU102 LEU103 LEU104 ARG105 PRO106 VAL107 THR108 PHE109 ALA110 PRO111 ASP112 CYS113 LEU114 ASN115 ALA116 ALA117 ASP118 VAL119 VAL120 SER121 LYS122 MET123 SER124 PRO125 GLY126 ASP127 VAL128 VAL129 LEU130 LEU131 GLU132 ASN133 VAL134 ARG135 PHE136 TYR137 LYS138 GLU139 GLU140 GLY141 SER142 LYS143 LYS144 ALA145 LYS146 ASP147 ARG148 GLU149 ALA150 MET151 ALA152 LYS153 ILE154 LEU155 ALA156 SER157 TYR158 GLY159 ASP160 VAL161 TYR162 ILE163 SER164 ASP165 ALA166 PHE167 GLY168 THR169 ALA170 HIS171 ARG172 ASP173 SER174 ALA175 THR176 MET177 THR178 GLY179 ILE180 PRO181 LYS182 ILE183 LEU184 GLY185 ASN186 GLY187 ALA188 ALA189 GLY190 TYR191 LEU192 MET193 GLU194 LYS195 GLU196 ILE197 SER198 TYR199 PHE200 ALA201 LYS202 VAL203 LEU204 GLY205 ASN206 PRO207 PRO208 ARG209 PRO210 LEU211 VAL212 ALA213 ILE214 VAL215 GLY216 GLY217 ALA218 LYS219 VAL220 SER221 ASP222 LYS223 ILE224 GLN225 LEU226 LEU227 ASP228 ASN229 MET230 LEU231 GLN232 ARG233 ILE234 ASP235 TYR236 LEU237 LEU238 ILE239 GLY240 GLY241 ALA242 MET243 ALA244 TYR245 THR246 PHE247 LEU248 LYS249 ALA250 GLN251 GLY252 TYR253 SER254 ILE255 GLY256 LYS257 SER258 LYS259 CYS260 GLU261 GLU262 SER263 LYS264 LEU265 GLU266 PHE267 ALA268 ARG269 SER270 LEU271 LEU272 LYS273 LYS274 ALA275 GLU276 ASP277 ARG278 LYS279 VAL280 GLN281 VAL282 ILE283 LEU284 PRO285 ILE286 ASP287 HIS288 VAL289 CYS290 HIS291 THR292 GLU293 PHE294 LYS295 ALA296 VAL297 ASP298 SER299 PRO300 LEU301 ILE302 THR303 GLU304 ASP305 GLN306 ASN307 ILE308 PRO309 GLU310 GLY311 HIS312 MET313 ALA314 LEU315 ASP316 ILE317 GLY318 PRO319 LYS320 THR321 ILE322 GLU323 LYS324 TYR325 VAL326 GLN327 THR328 ILE329 GLY330 LYS331 CYS332 LYS333 SER334 ALA335 ILE336 TRP337 ASN338 GLY339 PRO340 MET341 GLY342 VAL343 PHE344 GLU345 MET346 VAL347 PRO348 TYR349 SER350 LYS351 GLY352 THR353 PHE354 ALA355 ILE356 ALA357 LYS358 ALA359 MET360 GLY361 ARG362 GLY363 THR364 HIS365 GLU366 HIS367 GLY368 LEU369 MET370 SER371 ILE372 ILE373 GLY374 GLY375 GLY376 ASP377 SER378 ALA379 SER380 ALA381 ALA382 GLU383 LEU384 SER385 GLY386 GLU387 ALA388 LYS389 ARG390 MET391 SER392 HIS393 VAL394 SER395 THR396 GLY397 GLY398 GLY399 ALA400 SER401 LEU402 GLU403 LEU404 LEU405 GLU406 GLY407 LYS408 THR409 LEU410 PRO411 GLY412 VAL413 THR414 VAL415 LEU416 ASP417 ASP418 LYS419
Unit 3 GLU5 LYS6 LYS7 SER8 ILE9 ASN10 GLU11 CYS12 ASP13 LEU14 LYS15 GLY16 LYS17 LYS18 VAL19 LEU20 ILE21 ARG22 VAL23 ASP24 PHE25 ASN26 VAL27 PRO28 VAL29 LYS30 ASN31 GLY32 LYS33 ILE34 THR35 ASN36 ASP37 TYR38 ARG39 ILE40 ARG41 SER42 ALA43 LEU44 PRO45 THR46 LEU47 LYS48 LYS49 VAL50 LEU51 THR52 GLU53 GLY54 GLY55 SER56 CYS57 VAL58 LEU59 MET60 SER61 HIS62 LEU63 GLY64 ARG65 PRO66 LYS67 GLY68 ILE69 PRO70 MET71 ALA72 GLN73 ALA74 GLY75 LYS76 ILE77 ARG78 SER79 THR80 GLY81 GLY82 VAL83 PRO84 GLY85 PHE86 GLN87 GLN88 LYS89 ALA90 THR91 LEU92 LYS93 PRO94 VAL95 ALA96 LYS97 ARG98 LEU99 SER100 GLU101 LEU102 LEU103 LEU104 ARG105 PRO106 VAL107 THR108 PHE109 ALA110 PRO111 ASP112 CYS113 LEU114 ASN115 ALA116 ALA117 ASP118 VAL119 VAL120 SER121 LYS122 MET123 SER124 PRO125 GLY126 ASP127 VAL128 VAL129 LEU130 LEU131 GLU132 ASN133 VAL134 ARG135 PHE136 TYR137 LYS138 GLU139 GLU140 GLY141 SER142 LYS143 LYS144 ALA145 LYS146 ASP147 ARG148 GLU149 ALA150 MET151 ALA152 LYS153 ILE154 LEU155 ALA156 SER157 TYR158 GLY159 ASP160 VAL161 TYR162 ILE163 SER164 ASP165 ALA166 PHE167 GLY168 THR169 ALA170 HIS171 ARG172 ASP173 SER174 ALA175 THR176 MET177 THR178 GLY179 ILE180 PRO181 LYS182 ILE183 LEU184 GLY185 ASN186 GLY187 ALA188 ALA189 GLY190 TYR191 LEU192 MET193 GLU194 LYS195 GLU196 ILE197 SER198 TYR199 PHE200 ALA201 LYS202 VAL203 LEU204 GLY205 ASN206 PRO207 PRO208 ARG209 PRO210 LEU211 VAL212 ALA213 ILE214 VAL215 GLY216 GLY217 ALA218 LYS219 VAL220 SER221 ASP222 LYS223 ILE224 GLN225 LEU226 LEU227 ASP228 ASN229 MET230 LEU231 GLN232 ARG233 ILE234 ASP235 TYR236 LEU237 LEU238 ILE239 GLY240 GLY241 ALA242 MET243 ALA244 TYR245 THR246 PHE247 LEU248 LYS249 ALA250 GLN251 GLY252 TYR253 SER254 ILE255 GLY256 LYS257 SER258 LYS259 CYS260 GLU261 GLU262 SER263 LYS264 LEU265 GLU266 PHE267 ALA268 ARG269 SER270 LEU271 LEU272 LYS273 LYS274 ALA275 GLU276 ASP277 ARG278 LYS279 VAL280 GLN281 VAL282 ILE283 LEU284 PRO285 ILE286 ASP287 HIS288 VAL289 CYS290 HIS291 THR292 GLU293 PHE294 LYS295 ALA296 VAL297 ASP298 SER299 PRO300 LEU301 ILE302 THR303 GLU304 ASP305 GLN306 ASN307 ILE308 PRO309 GLU310 GLY311 HIS312 MET313 ALA314 LEU315 ASP316 ILE317 GLY318 PRO319 LYS320 THR321 ILE322 GLU323 LYS324 TYR325 VAL326 GLN327 THR328 ILE329 GLY330 LYS331 CYS332 LYS333 SER334 ALA335 ILE336 TRP337 ASN338 GLY339 PRO340 MET341 GLY342 VAL343 PHE344 GLU345 MET346 VAL347 PRO348 TYR349 SER350 LYS351 GLY352 THR353 PHE354 ALA355 ILE356 ALA357 LYS358 ALA359 MET360 GLY361 ARG362 GLY363 THR364 HIS365 GLU366 HIS367 GLY368 LEU369 MET370 SER371 ILE372 ILE373 GLY374 GLY375 GLY376 ASP377 SER378 ALA379 SER380 ALA381 ALA382 GLU383 LEU384 SER385 GLY386 GLU387 ALA388 LYS389 ARG390 MET391 SER392 HIS393 VAL394 SER395 THR396 GLY397 GLY398 GLY399 ALA400 SER401 LEU402 GLU403 LEU404 LEU405 GLU406 GLY407 LYS408 THR409 LEU410 PRO411 GLY412 VAL413 THR414 VAL415 LEU416 ASP417 ASP418 LYS419
Unit 4 GLU5 LYS6 LYS7 SER8 ILE9 ASN10 GLU11 CYS12 ASP13 LEU14 LYS15 GLY16 LYS17 LYS18 VAL19 LEU20 ILE21 ARG22 VAL23 ASP24 PHE25 ASN26 VAL27 PRO28 VAL29 LYS30 ASN31 GLY32 LYS33 ILE34 THR35 ASN36 ASP37 TYR38 ARG39 ILE40 ARG41 SER42 ALA43 LEU44 PRO45 THR46 LEU47 LYS48 LYS49 VAL50 LEU51 THR52 GLU53 GLY54 GLY55 SER56 CYS57 VAL58 LEU59 MET60 SER61 HIS62 LEU63 GLY64 ARG65 PRO66 LYS67 GLY68 ILE69 PRO70 MET71 ALA72 GLN73 ALA74 GLY75 LYS76 ILE77 ARG78 SER79 THR80 GLY81 GLY82 VAL83 PRO84 GLY85 PHE86 GLN87 GLN88 LYS89 ALA90 THR91 LEU92 LYS93 PRO94 VAL95 ALA96 LYS97 ARG98 LEU99 SER100 GLU101 LEU102 LEU103 LEU104 ARG105 PRO106 VAL107 THR108 PHE109 ALA110 PRO111 ASP112 CYS113 LEU114 ASN115 ALA116 ALA117 ASP118 VAL119 VAL120 SER121 LYS122 MET123 SER124 PRO125 GLY126 ASP127 VAL128 VAL129 LEU130 LEU131 GLU132 ASN133 VAL134 ARG135 PHE136 TYR137 LYS138 GLU139 GLU140 GLY141 SER142 LYS143 LYS144 ALA145 LYS146 ASP147 ARG148 GLU149 ALA150 MET151 ALA152 LYS153 ILE154 LEU155 ALA156 SER157 TYR158 GLY159 ASP160 VAL161 TYR162 ILE163 SER164 ASP165 ALA166 PHE167 GLY168 THR169 ALA170 HIS171 ARG172 ASP173 SER174 ALA175 THR176 MET177 THR178 GLY179 ILE180 PRO181 LYS182 ILE183 LEU184 GLY185 ASN186 GLY187 ALA188 ALA189 GLY190 TYR191 LEU192 MET193 GLU194 LYS195 GLU196 ILE197 SER198 TYR199 PHE200 ALA201 LYS202 VAL203 LEU204 GLY205 ASN206 PRO207 PRO208 ARG209 PRO210 LEU211 VAL212 ALA213 ILE214 VAL215 GLY216 GLY217 ALA218 LYS219 VAL220 SER221 ASP222 LYS223 ILE224 GLN225 LEU226 LEU227 ASP228 ASN229 MET230 LEU231 GLN232 ARG233 ILE234 ASP235 TYR236 LEU237 LEU238 ILE239 GLY240 GLY241 ALA242 MET243 ALA244 TYR245 THR246 PHE247 LEU248 LYS249 ALA250 GLN251 GLY252 TYR253 SER254 ILE255 GLY256 LYS257 SER258 LYS259 CYS260 GLU261 GLU262 SER263 LYS264 LEU265 GLU266 PHE267 ALA268 ARG269 SER270 LEU271 LEU272 LYS273 LYS274 ALA275 GLU276 ASP277 ARG278 LYS279 VAL280 GLN281 VAL282 ILE283 LEU284 PRO285 ILE286 ASP287 HIS288 VAL289 CYS290 HIS291 THR292 GLU293 PHE294 LYS295 ALA296 VAL297 ASP298 SER299 PRO300 LEU301 ILE302 THR303 GLU304 ASP305 GLN306 ASN307 ILE308 PRO309 GLU310 GLY311 HIS312 MET313 ALA314 LEU315 ASP316 ILE317 GLY318 PRO319 LYS320 THR321 ILE322 GLU323 LYS324 TYR325 VAL326 GLN327 THR328 ILE329 GLY330 LYS331 CYS332 LYS333 SER334 ALA335 ILE336 TRP337 ASN338 GLY339 PRO340 MET341 GLY342 VAL343 PHE344 GLU345 MET346 VAL347 PRO348 TYR349 SER350 LYS351 GLY352 THR353 PHE354 ALA355 ILE356 ALA357 LYS358 ALA359 MET360 GLY361 ARG362 GLY363 THR364 HIS365 GLU366 HIS367 GLY368 LEU369 MET370 SER371 ILE372 ILE373 GLY374 GLY375 GLY376 ASP377 SER378 ALA379 SER380 ALA381 ALA382 GLU383 LEU384 SER385 GLY386 GLU387 ALA388 LYS389 ARG390 MET391 SER392 HIS393 VAL394 SER395 THR396 GLY397 GLY398 GLY399 ALA400 SER401 LEU402 GLU403 LEU404 LEU405 GLU406 GLY407 LYS408 THR409 LEU410 PRO411 GLY412 VAL413 THR414 VAL415 LEU416 ASP417 ASP418 LYS419

Ligands
Unit 5 ADP421 MG422 3PG423 PO4701 PO4704
Unit 6 ADP421 MG422 3PG423
Unit 7 ADP421 MG422 PO4624 PO4702 PO4703
Unit 8 ADP421 MG422 PO4625

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany