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(-) Description

Title :  AT BASE PAIRS ARE LESS STABLE THAN GC BASE PAIRS IN Z-DNA: THE CRYSTAL STRUCTURE OF D(M(5)CGTAM(5)CG)
 
Authors :  A. H. -J. Wang, T. Hakoshima, G. A. Van Der Marel, J. H. Van Boom, A. Rich
Date :  18 Aug 88  (Deposition) - 18 Aug 88  (Release) - 21 Sep 01  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.20
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Z-Dna, Double Helix, Modified (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. H. -J. Wang, T. Hakoshima, G. A. Van Der Marel, J. H. Van Boom, A. Rich
At Base Pairs Are Less Stable Than Gc Base Pairs In Z-Dna: The Crystal Structure Of D(M(5)Cgtam(5)Cg)
Cell(Cambridge, Mass. ) V. 37 321 1984
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA (5'-D(*(CH3)CP*GP*TP*AP*(CH3)CP*G)-3')
    ChainsA, B
    EngineeredYES
    SyntheticYES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric/Biological Unit (2, 8)
No.NameCountTypeFull Name
1+C4Mod. Residue
2CH34Ligand/IonMETHYL GROUP

(-) Sites  (0, 0)

(no "Site" information available for ZDFB06)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for ZDFB06)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for ZDFB06)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:6
                                     
                zdfb06 A  1 cGTAcG  6
                            |   | 
                            |   | 
                            1-+C| 
                                5-+C

Chain B from PDB  Type:DNA  Length:6
                                     
                zdfb06 B  7 cGTAcG 12
                            |   | 
                            |   | 
                            7-+C| 
                               11-+C

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for ZDFB06)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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