1GID | URX053 - JenaLib

Title :   CRYSTAL STRUCTURE OF A GROUP I RIBOZYME DOMAIN: PRINCIPLES OF RNA PACKING

Authors :   J. H. Cate, A. R. Gooding, E. Podell, K. Zhou, B. L. Golden, C. E. Kundrot, T. R. Cech, J. A. Doudna

Date :   22 Aug 96 (Deposition) - 31 Dec 96 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.50

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Rna, P4-P6 Ribozyme Domain Of The Tetrahymena Group I Intron (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. H. Cate, A. R. Gooding, E. Podell, K. Zhou, B. L. Golden, C. E. Kundrot, T. R. Cech, J. A. Doudna
Crystal Structure Of A Group I Ribozyme Domain: Principles Of Rna Packing.
Science V. 273 1678 1996
PubMed-ID: 8781224
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 28)

Sites (25, 25)

Asymmetric Unit (25, 25)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	G A:188	BINDING SITE FOR RESIDUE MG A 265
02	AC2	SOFTWARE	G B:188	BINDING SITE FOR RESIDUE MG B 266
03	AC3	SOFTWARE	A A:183 , A A:184 , A A:186	BINDING SITE FOR RESIDUE MG A 267
04	AC4	SOFTWARE	A A:183 , A A:184 , A A:186 , A A:187	BINDING SITE FOR RESIDUE MG A 268
05	AC5	SOFTWARE	A B:183 , A B:184 , A B:186	BINDING SITE FOR RESIDUE MG B 269
06	AC6	SOFTWARE	A B:183 , A B:184 , A B:186 , A B:187	BINDING SITE FOR RESIDUE MG B 270
07	AC7	SOFTWARE	G B:163 , G B:164	BINDING SITE FOR RESIDUE MG B 271
08	AC8	SOFTWARE	G A:163 , G A:164	BINDING SITE FOR RESIDUE MG A 272
09	AC9	SOFTWARE	A A:171	BINDING SITE FOR RESIDUE MG A 274
10	BC1	SOFTWARE	A B:171	BINDING SITE FOR RESIDUE MG B 275
11	BC2	SOFTWARE	A A:173	BINDING SITE FOR RESIDUE MG A 276
12	BC3	SOFTWARE	C A:213 , C A:255	BINDING SITE FOR RESIDUE MG A 277
13	BC4	SOFTWARE	G B:112	BINDING SITE FOR RESIDUE MG B 279
14	BC5	SOFTWARE	A B:173	BINDING SITE FOR RESIDUE MG B 280
15	BC6	SOFTWARE	A B:248 , U B:249 , G B:250	BINDING SITE FOR RESIDUE MG B 281
16	BC7	SOFTWARE	A A:248 , U A:249 , G A:250	BINDING SITE FOR RESIDUE MG A 282
17	BC8	SOFTWARE	U A:155	BINDING SITE FOR RESIDUE MG A 284
18	BC9	SOFTWARE	G A:112	BINDING SITE FOR RESIDUE MG A 285
19	CC1	SOFTWARE	U B:205	BINDING SITE FOR RESIDUE MG B 286
20	CC2	SOFTWARE	U A:120	BINDING SITE FOR RESIDUE MG A 287
21	CC3	SOFTWARE	U B:120	BINDING SITE FOR RESIDUE MG B 288
22	CC4	SOFTWARE	A A:146 , G A:147 , G A:148 , G A:149 , U A:155 , U A:156	BINDING SITE FOR RESIDUE NCO A 261
23	CC5	SOFTWARE	G A:174 , G A:175 , G A:176 , U A:177	BINDING SITE FOR RESIDUE NCO A 262
24	CC6	SOFTWARE	A B:146 , G B:147 , G B:148 , G B:149 , U B:155 , U B:156	BINDING SITE FOR RESIDUE NCO B 263
25	CC7	SOFTWARE	G B:174 , G B:175 , G B:176 , U B:177	BINDING SITE FOR RESIDUE NCO B 264

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:RNA  Length:158
                                                                                                                                                                                              
                 1gid A 103 GAAUUGCGGGAAAGGGGUCAACAGCCGUUCAGUACCAAGUCUCAGGGGAAACUUUGAGAUGGCCUUGCAAAGGGUAUGGUAAUAAGCUGACGGACAUGGUCCUAACCACGCAGCCAAGUCCUAAGUCAACAGAUCUUCUGUUGAUAUGGAUGCAGUUC 260
                                   112       122       132       142       152       162       172       182       192       202       212       222       232       242       252

Chain B from PDB  Type:RNA  Length:158
                                                                                                                                                                                              
                 1gid B 103 GAAUUGCGGGAAAGGGGUCAACAGCCGUUCAGUACCAAGUCUCAGGGGAAACUUUGAGAUGGCCUUGCAAAGGGUAUGGUAAUAAGCUGACGGACAUGGUCCUAACCACGCAGCCAAGUCCUAAGUCAACAGAUCUUCUGUUGAUAUGGAUGCAGUUC 260
                                   112       122       132       142       152       162       172       182       192       202       212       222       232       242       252

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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	ribbon, spacefill: poly-nucleotide base-base H-bond interactions [ mono GIF format \| stereo GIF format ](mono, stereo)
	RNA backbone: ribbon; cluster of nucleotides forming an uninterrupted network linked by base-base base-backbone and backbone-backbine H-bonds [ stereo GIF format \| mono GIF format ](mono, stereo)
Setor
	ribbon, Mg, water, cobalt hexammine [ mono GIF format \| stereo GIF format ] (mono, stereo)
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