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(-) Description

Title :  CRYSTAL STRUCTURE OF 2-AMINOPURINE LABELLED BACTERIAL DECODING SITE RNA
 
Authors :  S. Shandrick, Q. Zhao, Q. Han, B. K. Ayida, M. Takahashi, G. C. Winters, K. B. Simonsen, D. Vourloumis, T. Hermann
Date :  08 Apr 04  (Deposition) - 15 Jun 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A,C
Keywords :  Crystal Structure, Bacterial Decoding Site Rna, 9-Beta-D- Ribofuranosyl-9H-Purin-2-Amine (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Shandrick, Q. Zhao, Q. Han, B. K. Ayida, M. Takahashi, G. C. Winters, K. B. Simonsen, D. Vourloumis, T. Hermann
Monitoring Molecular Recognition Of The Ribosomal Decoding Site.
Angew. Chem. Int. Ed. Engl. V. 43 3177 2004
PubMed-ID: 15199571  |  Reference-DOI: 10.1002/ANIE.200454217
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'- R(*GP*GP*UP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*CP*UP*CP*GP*G)- 3'
    Chains: A
    Engineered: YES
    Synthetic: YES
 
Molecule 2 - 5'- R(*CP*GP*AP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*AP*CP*CP*C)-3'
    Chains: C
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREA A:8 , HOH A:83 , U C:15 , C C:16 , A C:17 , SO4 C:202 , HOH C:243BINDING SITE FOR RESIDUE SO4 C 201
2AC2SOFTWAREC C:18 , SO4 C:201BINDING SITE FOR RESIDUE SO4 C 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1T0E)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:RNA  Length:18
                                                 
                  1t0e A  1 GGUGGUGAAGUCGCUCGG 18
                                    10        


Chain C from PDB  Type:RNA  Length:17
                                                
                  1t0e C  9 CGAGCGUCACACCACCC 25
                                    18
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1T0E)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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  1t0e
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

1t0d