462D | UR0005 - JenaLib

Title :   CRYSTAL STRUCTURE OF THE HIV-1 GENOMIC RNA DIMERIZATION INITIATION SITE

Authors :   E. Ennifar, M. Yusupov, P. Walter, R. Marquet, C. Ehresmann, B. Ehresmann, P. Dumas

Date :   18 Mar 99 (Deposition) - 02 Dec 99 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym./Biol. Unit : A,B

Keywords :   Hiv, Rna Duplex, Mismatch, Bulges, Magnesium Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. Ennifar, M. Yusupov, P. Walter, R. Marquet, B. Ehresmann, C. Ehresmann, P. Dumas
The Crystal Structure Of The Dimerization Initiation Site Of Genomic Hiv-1 Rna Reveals An Extended Duplex With Two Adenine Bulges.
Structure Fold. Des. V. 7 1439 1999
PubMed-ID: 10574792 | Reference-DOI: 10.1016/S0969-2126(00)80033-7
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 8)

Sites (8, 8)

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HOH A:606 , HOH A:618 , HOH A:621 , HOH A:622	BINDING SITE FOR RESIDUE MG A 501
2	AC2	SOFTWARE	G A:9 , HOH A:565 , HOH A:597 , G B:9 , HOH B:571 , HOH B:594	BINDING SITE FOR RESIDUE MG B 502
3	AC3	SOFTWARE	U A:3 , G A:4 , HOH A:587 , HOH A:607 , HOH B:517	BINDING SITE FOR RESIDUE MG A 503
4	AC4	SOFTWARE	HOH B:572 , HOH B:582 , HOH B:605 , HOH B:606 , HOH B:607	BINDING SITE FOR RESIDUE MG B 504
5	AC5	SOFTWARE	HOH B:523 , HOH B:564 , HOH B:565 , HOH B:573 , HOH B:580 , HOH B:589	BINDING SITE FOR RESIDUE MG B 505
6	AC6	SOFTWARE	A B:8 , G B:9 , HOH B:507 , HOH B:509 , HOH B:511 , HOH B:566	BINDING SITE FOR RESIDUE MG B 506
7	AC7	SOFTWARE	A A:8 , G A:9 , HOH A:509 , HOH A:583 , HOH A:608 , HOH A:623	BINDING SITE FOR RESIDUE MG A 507
8	AC8	SOFTWARE	G A:12 , HOH A:581 , G B:12 , C B:13 , HOH B:513 , HOH B:515	BINDING SITE FOR RESIDUE MG A 508

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

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Chain A from PDB  Type:RNA  Length:23
                                                      
                  462d A  1 CUUGCUGAGGUGCACACAGCAAG 23
                                    10        20

Chain B from PDB  Type:RNA  Length:23
                                                      
                  462d B  1 CUUGCUGAGGUGCACACAGCAAG 23
                                    10        20

Legend:		→ Mismatch	(orange background)
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Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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Description