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(-) Description

Title :  STRUCTURE OF SARCIN/RICIN LOOP FROM RAT 28S RRNA
 
Authors :  C. C. Correll, A. Munishkin, Y. L. Chan, Z. Ren, I. G. Wool, T. A. Steitz
Date :  04 Oct 98  (Deposition) - 07 Oct 98  (Release) - 03 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A
Keywords :  U-Rna, Double Helix, Hairpin, Blunt Stem, Tetraloop Mismatched, Base Triple, Ribonucleic Acid, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. C. Correll, A. Munishkin, Y. L. Chan, Z. Ren, I. G. Wool, T. A. Steitz
Crystal Structure Of The Ribosomal Rna Domain Essential For Binding Elongation Factors.
Proc. Natl. Acad. Sci. Usa V. 95 13436 1998
PubMed-ID: 9811818  |  Reference-DOI: 10.1073/PNAS.95.23.13436
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - SARCIN/RICIN LOOP FROM RAT 28S R-RNA
    Chains: A
    Engineered: YES
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 10)

Asymmetric/Biological Unit (2, 10)
No.NameCountTypeFull Name
1CBV1Mod. Nucleotide5-BROMOCYTIDINE 5'-(DIHYDROGEN PHOSPHATE)
2MG9Ligand/IonMAGNESIUM ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREC A:23 , G A:24BINDING SITE FOR RESIDUE MG A 31
2AC2SOFTWAREG A:16 , HOH A:107BINDING SITE FOR RESIDUE MG A 32
3AC3SOFTWAREG A:24BINDING SITE FOR RESIDUE MG A 33
4AC4SOFTWAREC A:28BINDING SITE FOR RESIDUE MG A 34
5AC5SOFTWAREU A:11 , A A:12 , C A:13BINDING SITE FOR RESIDUE MG A 35
6AC6SOFTWAREC A:29BINDING SITE FOR RESIDUE MG A 36
7AC7SOFTWAREC A:25BINDING SITE FOR RESIDUE MG A 38

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 430D)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 430D)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
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Chain A from PDB  Type:RNA  Length:29
                                                            
                  430d A  1 GGGUGCUCAGUACGAGAGGAACCGCAcCC 29
                                    10        20      |  
                                                     27-CBV
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 430D)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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  430d
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 Related Entries

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