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(-) Description

Title :  THREE-DIMENSIONAL STRUCTURE OF A HAMMERHEAD RIBOZYME
 
Authors :  H. W. Pley, K. M. Flaherty, D. B. Mckay
Date :  06 Jun 95  (Deposition) - 07 Dec 95  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Keywords :  Dna-Rna Hammerhead Ribozyme, Loop (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. W. Pley, K. M. Flaherty, D. B. Mckay
Three-Dimensional Structure Of A Hammerhead Ribozyme.
Nature V. 372 68 1994
PubMed-ID: 7969422  |  Reference-DOI: 10.1038/372068A0
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HAMMERHEAD RIBOZYME-RNA STRAND
    Chains: A, C, E
    Engineered: YES
 
Molecule 2 - HAMMERHEAD RIBOZYME-DNA STRAND
    Chains: B, D, F
    Engineered: YES

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): AB    
Biological Unit 2 (1x):   CD  
Biological Unit 3 (1x):     EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1HMH)

(-) Sites  (0, 0)

(no "Site" information available for 1HMH)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1HMH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1HMH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1HMH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1HMH)

(-) Exons   (0, 0)

(no "Exon" information available for 1HMH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:RNA  Length:34
                                                                  
                 1hmh A  27 GGCGACCCUGAUGAGGCCGAAAGGCCGAAACCGU 155
                            ||||||||50|||||  22L|||||||151    
                            |||||||40||||||  22L||||||140|    
                           27|||||||50|||||  |23L||||||151    
                            26|||||| 60||||  ||24L||||||      
                             25|||||  70|||  || 114|||||      
                              24||||   80||  ||  113||||      
                               23|||    90|  ||   112|||      
                                22||    101  ||    111||      
                                 21|       104|     120|      
                                  30        21L      130      


Chain B from PDB  Type:DNA  Length:13
                                             
                 1hmh B 165 ACGGTCGGTCGCC  17
                            ||||||| 14   
                          165||||||      
                           164|||||      
                            163||||      
                             162|||      
                              161||      
                               170|      
                                 11      


Chain C from PDB  Type:RNA  Length:34
                                                                  
                 1hmh C  27 GGCGACCCUGAUGAGGCCGAAAGGCCGAAACCGU 155
                            ||||||||50|||||  22L|||||||151    
                           27|||||||50|||||  |23L||||||151    
                            26|||||||60||||  ||24L|||||||     
                             25|||||| 70|||  |||114||||||     
                              24|||||  80||  ||| 113|||||     
                               23||||   90|  |||  112||||     
                                22|||   101  |||   111|||     
                                 21||      104||    120||     
                                  30|       21L|     130|     
                                   40        22L      140     


Chain D from PDB  Type:DNA  Length:13
                                             
                 1hmh D 165 ACGGTCGGTCGCC  17
                            ||||||| 14   
                          165||||||      
                           164|||||      
                            163||||      
                             162|||      
                              161||      
                               170|      
                                 11      


Chain E from PDB  Type:RNA  Length:34
                                                                  
                 1hmh E  27 GGCGACCCUGAUGAGGCCGAAAGGCCGAAACCGU 155
                            ||||||||50|||||  22L|||||||151    
                           27|||||||50|||||  |23L||||||151    
                            26|||||||60||||  ||24L|||||||     
                             25|||||| 70|||  |||114||||||     
                              24|||||  80||  ||| 113|||||     
                               23||||   90|  |||  112||||     
                                22|||   101  |||   111|||     
                                 21||      104||    120||     
                                  30|       21L|     130|     
                                   40        22L      140     


Chain F from PDB  Type:DNA  Length:13
                                             
                 1hmh F 165 ACGGTCGGTCGCC  17
                            ||||||| 14   
                          165||||||      
                           164|||||      
                            163||||      
                             162|||      
                              161||      
                               170|      
                                 11
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1HMH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1HMH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1HMH)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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