1JRN | UD0014 - JenaLib

Title :   ORTHORHOMBIC FORM OF OXYTRICHA TELOMERIC DNA AT 2.0A

Authors :   S. M. Haider, G. Parkinson, S. Neidle

Date :   14 Aug 01 (Deposition) - 28 Jun 02 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Oxytricha, G-Quartets, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Haider, G. N. Parkinson, S. Neidle
Crystal Structure Of The Potassium Form Of An Oxytricha Nova G-Quadruplex.
J. Mol. Biol. V. 320 189 2002
PubMed-ID: 12079378 | Reference-DOI: 10.1016/S0022-2836(02)00428-X
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 10)

Sites (10, 10)

Asymmetric Unit (10, 10)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	DG A:1001 , DG A:1012 , K A:5016 , DG B:2004 , DT B:2005 , DT B:2007 , DG B:2009 , HOH B:6004	BINDING SITE FOR RESIDUE K B 5013
02	AC2	SOFTWARE	DG A:1002 , DG A:1003 , DG A:1010 , DG A:1011 , K A:5016 , DG B:2002 , DG B:2003 , DG B:2010 , DG B:2011 , K B:5015	BINDING SITE FOR RESIDUE K B 5014
03	AC3	SOFTWARE	DG A:1003 , DG A:1004 , DG A:1009 , DG A:1010 , K A:5017 , DG B:2001 , DG B:2002 , DG B:2011 , DG B:2012 , K B:5014	BINDING SITE FOR RESIDUE K B 5015
04	AC4	SOFTWARE	DG A:1001 , DG A:1002 , DG A:1011 , DG A:1012 , DG B:2003 , DG B:2004 , DG B:2009 , DG B:2010 , K B:5013 , K B:5014	BINDING SITE FOR RESIDUE K A 5016
05	AC5	SOFTWARE	DG A:1004 , DT A:1005 , DT A:1007 , DG A:1009 , DG B:2001 , DG B:2012 , K B:5015	BINDING SITE FOR RESIDUE K A 5017
06	AC6	SOFTWARE	DG C:3002 , DG C:3003 , DG C:3010 , DG C:3011 , K C:5019 , K C:5020 , DG D:4002 , DG D:4003 , DG D:4010 , DG D:4011	BINDING SITE FOR RESIDUE K C 5018
07	AC7	SOFTWARE	DG C:3001 , DG C:3002 , DG C:3011 , DG C:3012 , K C:5018 , DG D:4003 , DG D:4004 , DG D:4009 , DG D:4010 , K D:5021	BINDING SITE FOR RESIDUE K C 5019
08	AC8	SOFTWARE	DG C:3003 , DG C:3004 , DG C:3009 , DG C:3010 , K C:5018 , K C:5022 , DG D:4001 , DG D:4002 , DG D:4011 , DG D:4012	BINDING SITE FOR RESIDUE K C 5020
09	AC9	SOFTWARE	DG C:3001 , DG C:3012 , K C:5019 , DG D:4004 , DT D:4005 , DT D:4007 , DG D:4009	BINDING SITE FOR RESIDUE K D 5021
10	BC1	SOFTWARE	DG C:3004 , DT C:3005 , DT C:3007 , DG C:3009 , K C:5020 , DG D:4001 , DG D:4012	BINDING SITE FOR RESIDUE K C 5022

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

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Chain A from PDB  Type:DNA  Length:12
                                             
                1jrn A 1001 GGGGTTTTGGGG 1012
                                  1010

Chain B from PDB  Type:DNA  Length:12
                                             
                1jrn B 2001 GGGGTTTTGGGG 2012
                                  2010

Chain C from PDB  Type:DNA  Length:12
                                             
                1jrn C 3001 GGGGTTTTGGGG 3012
                                  3010

Chain D from PDB  Type:DNA  Length:12
                                             
                1jrn D 4001 GGGGTTTTGGGG 4012
                                  4010

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Classification and Annotation

SCOP Domains (0, 0)

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Pfam Domains (0, 0)

Gene Ontology (0, 0)

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