1TEZ | PD0552 - JenaLib

Biol.Unit 1 - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   COMPLEX BETWEEN DNA AND THE DNA PHOTOLYASE FROM ANACYSTIS NIDULANS

Authors :   L. -O. Essen, T. Carell, A. Mees, T. Klar

Date :   26 May 04 (Deposition) - 14 Dec 04 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym. Unit : A,B,C,D,I,J,K,L,M,N,O,P
Biol. Unit 1: A,C,I,J,K  (1x)
Biol. Unit 2: B,D,I,K,L,M,N  (1x)
Biol. Unit 3: B,C,M,N,O,P  (1x)
Biol. Unit 4: A,B,D,P  (1x)

Keywords :   Photolyase; Dna Repair; Light-Driven Electron Transfer, Lyase-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Mees, T. Klar, P. Gnau, U. Hennecke, A. P. M. Eker, T. Carell, L. -O. Essen
Crystal Structure Of A Photolyase Bound To A Cpd-Like Dna Lesion After In Situ Repair
Science V. 306 1789 2004
PubMed-ID: 15576622 | Reference-DOI: 10.1126/SCIENCE.1101598
(for further references see the PDB file header)

*Molecule 1 - 5'-D(APTPCPGPGPCPT(TCP)PCPGPC)-3'**
	Chains	:	I, K
	Engineered	:	YES
	Other Details	:	FORMACETAL LINKAGE REPLACES PHOSPHATE LINKAGE BETWEEN T7 AND T8 OF CHAINS I AND K
	Synthetic	:	YES

*Molecule 2 - 5'-D(PCPGPAPAPGPCPCPGPA)-3'**
	Chains	:	J, L
	Engineered	:	YES
	Synthetic	:	YES

*Molecule 3 - 5'-D(TPCPGPC)-3'*
	Chains	:	M, O
	Engineered	:	YES
	Synthetic	:	YES

*Molecule 4 - 5'-D(PGPCPCPGPA)-3'**
	Chains	:	N, P
	Engineered	:	YES
	Synthetic	:	YES

Molecule 5 - DEOXYRIBODIPYRIMIDINE PHOTOLYASE
	Cellular Location	:	CYTOPLASM
	Chains	:	A, B, C, D
	EC Number	:	4.1.99.3
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Cellular Location	:	CYTOPLASM
	Expression System Plasmid	:	PET3A
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	PHR
	Organism Scientific	:	SYNECHOCOCCUS ELONGATUS
	Organism Taxid	:	269084
	Other Details	:	SYNTHETIC DNA OLIGONUCLEOTIDES ENGINEERED AS COUNTERSTRAND
	Strain	:	PCC 6301
	Synonym	:	DNA PHOTOLYASE; PHOTOREACTIVATING ENZYME

		1	2	3	4	5	6	7	8	9	10	11	12
Asymmetric Unit	:	A	B	C	D	I	J	K	L	M	N	O	P
Biological Unit 1 (1x)	:	A		C		I	J	K
Biological Unit 2 (1x)	:		B		D	I		K	L	M	N
Biological Unit 3 (1x)	:		B	C						M	N	O	P
Biological Unit 4 (1x)	:	A	B		D								P

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (6, 18)

No.	Name	Count	Type	Full Name
1	C	4	Ligand/Ion	CYTIDINE-5'-MONOPHOSPHATE
2	FAD	4	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
3	G	2	Ligand/Ion	GUANOSINE-5'-MONOPHOSPHATE
4	HDF	4	Ligand/Ion	8-HYDROXY-10-(D-RIBO-2,3,4,5-TETRAHYDROXYPENTYL)-5-DEAZAISOALLOXAZINE
5	MG	2	Ligand/Ion	MAGNESIUM ION
6	TCP	2	Mod. Nucleotide	5'-METHYLTHYMIDINE

Biological Unit 1 (3, 6)

No.	Name	Count	Type	Full Name
1	C	-1	Ligand/Ion	CYTIDINE-5'-MONOPHOSPHATE
2	FAD	2	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
3	G	-1	Ligand/Ion	GUANOSINE-5'-MONOPHOSPHATE
4	HDF	2	Ligand/Ion	8-HYDROXY-10-(D-RIBO-2,3,4,5-TETRAHYDROXYPENTYL)-5-DEAZAISOALLOXAZINE
5	MG	-1	Ligand/Ion	MAGNESIUM ION
6	TCP	2	Mod. Nucleotide	5'-METHYLTHYMIDINE

Biological Unit 2 (3, 6)

No.	Name	Count	Type	Full Name
1	C	-1	Ligand/Ion	CYTIDINE-5'-MONOPHOSPHATE
2	FAD	2	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
3	G	-1	Ligand/Ion	GUANOSINE-5'-MONOPHOSPHATE
4	HDF	2	Ligand/Ion	8-HYDROXY-10-(D-RIBO-2,3,4,5-TETRAHYDROXYPENTYL)-5-DEAZAISOALLOXAZINE
5	MG	-1	Ligand/Ion	MAGNESIUM ION
6	TCP	2	Mod. Nucleotide	5'-METHYLTHYMIDINE

Biological Unit 3 (2, 4)

No.	Name	Count	Type	Full Name
1	C	-1	Ligand/Ion	CYTIDINE-5'-MONOPHOSPHATE
2	FAD	2	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
3	G	-1	Ligand/Ion	GUANOSINE-5'-MONOPHOSPHATE
4	HDF	2	Ligand/Ion	8-HYDROXY-10-(D-RIBO-2,3,4,5-TETRAHYDROXYPENTYL)-5-DEAZAISOALLOXAZINE
5	MG	-1	Ligand/Ion	MAGNESIUM ION
6	TCP	-1	Mod. Nucleotide	5'-METHYLTHYMIDINE

Biological Unit 4 (2, 6)

No.	Name	Count	Type	Full Name
1	C	-1	Ligand/Ion	CYTIDINE-5'-MONOPHOSPHATE
2	FAD	3	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
3	G	-1	Ligand/Ion	GUANOSINE-5'-MONOPHOSPHATE
4	HDF	3	Ligand/Ion	8-HYDROXY-10-(D-RIBO-2,3,4,5-TETRAHYDROXYPENTYL)-5-DEAZAISOALLOXAZINE
5	MG	-1	Ligand/Ion	MAGNESIUM ION
6	TCP	-1	Mod. Nucleotide	5'-METHYLTHYMIDINE

Asymmetric Unit (16, 16)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP B:399 , HOH B:9305 , HOH B:9405 , DC L:12 , HOH L:1609	BINDING SITE FOR RESIDUE MG B 9001
02	AC2	SOFTWARE	ASP A:399 , HOH A:9410 , HOH A:9411 , DC J:12 , HOH J:1610 , HOH J:1611	BINDING SITE FOR RESIDUE MG A 9002
03	AC3	SOFTWARE	ARG A:350 , GLN A:411 , TCP I:12 , G I:14 , HOH I:1450 , DG J:7 , DA J:8	BINDING SITE FOR RESIDUE C I 13
04	AC4	SOFTWARE	ILE A:405 , PHE A:406 , ASN A:407 , GLN A:411 , C I:13 , C I:15 , DC J:6 , DG J:7	BINDING SITE FOR RESIDUE G I 14
05	AC5	SOFTWARE	ASN A:407 , GLN A:461 , G I:14	BINDING SITE FOR RESIDUE C I 15
06	AC6	SOFTWARE	ARG B:350 , PHE B:406 , GLN B:411 , TCP K:12 , G K:14 , HOH K:1407 , DG L:7 , DA L:8	BINDING SITE FOR RESIDUE C K 13
07	AC7	SOFTWARE	ILE B:405 , PHE B:406 , ASN B:407 , GLN B:411 , LYS B:414 , C K:13 , C K:15 , DC L:6 , DG L:7	BINDING SITE FOR RESIDUE G K 14
08	AC8	SOFTWARE	ASN B:407 , GLN B:461 , G K:14	BINDING SITE FOR RESIDUE C K 15
09	AC9	SOFTWARE	TYR A:228 , THR A:240 , SER A:241 , GLY A:242 , LEU A:243 , SER A:244 , LEU A:247 , TRP A:280 , GLU A:283 , ARG A:287 , TYR A:290 , TRP A:346 , ASN A:349 , ARG A:352 , LEU A:378 , ASP A:380 , GLY A:381 , ASP A:382 , ALA A:385 , ASN A:386 , GLY A:389 , TRP A:390 , HOH A:9011 , HOH A:9013 , HOH A:9021 , HOH A:9022 , HOH A:9023 , HOH A:9024 , DT I:7 , TCP I:12	BINDING SITE FOR RESIDUE FAD A 5485
10	BC1	SOFTWARE	ARG A:10 , PHE A:35 , CYS A:36 , LEU A:37 , ASP A:38 , ILE A:41 , LEU A:42 , MET A:47 , ARG A:51 , LEU A:55 , ASP A:101 , GLU A:103 , GLY A:106 , ARG A:109 , LYS A:248 , PHE A:249 , HOH A:9003 , HOH A:9102 , HOH A:9112	BINDING SITE FOR RESIDUE HDF A 5486
11	BC2	SOFTWARE	TYR B:228 , THR B:240 , SER B:241 , GLY B:242 , LEU B:243 , SER B:244 , LEU B:247 , TRP B:280 , GLU B:283 , ARG B:287 , TYR B:290 , TRP B:346 , ASN B:349 , ARG B:352 , LEU B:378 , ASP B:380 , GLY B:381 , ASP B:382 , ALA B:385 , ASN B:386 , GLY B:389 , TRP B:390 , HOH B:9010 , HOH B:9012 , HOH B:9020 , HOH B:9021 , HOH B:9022 , HOH B:9023 , DT K:7 , TCP K:12	BINDING SITE FOR RESIDUE FAD B 6485
12	BC3	SOFTWARE	ARG B:10 , PHE B:35 , CYS B:36 , LEU B:37 , ASP B:38 , ILE B:41 , LEU B:42 , MET B:47 , ARG B:51 , LEU B:55 , ASP B:101 , GLU B:103 , GLY B:106 , ARG B:109 , LYS B:248 , PHE B:249 , HOH B:9002 , HOH B:9102 , HOH B:9112	BINDING SITE FOR RESIDUE HDF B 6486
13	BC4	SOFTWARE	TYR C:228 , THR C:240 , SER C:241 , GLY C:242 , LEU C:243 , SER C:244 , LEU C:247 , TRP C:280 , GLU C:283 , ARG C:287 , TYR C:290 , TRP C:346 , ASN C:349 , ARG C:352 , LEU C:378 , ASP C:380 , GLY C:381 , ASP C:382 , ALA C:385 , ASN C:386 , GLY C:389 , TRP C:390 , HOH C:7496 , HOH C:7498 , HOH C:7506 , HOH C:7508 , HOH C:7509 , HOH C:7510 , HOH C:7836	BINDING SITE FOR RESIDUE FAD C 7485
14	BC5	SOFTWARE	ARG C:10 , PHE C:35 , CYS C:36 , LEU C:37 , ASP C:38 , ILE C:41 , LEU C:42 , MET C:47 , ARG C:51 , LEU C:55 , ASP C:101 , GLU C:103 , GLY C:106 , ARG C:109 , LYS C:248 , PHE C:249 , HOH C:7488 , HOH C:7589 , HOH C:7599	BINDING SITE FOR RESIDUE HDF C 7486
15	BC6	SOFTWARE	TYR D:228 , THR D:240 , SER D:241 , GLY D:242 , LEU D:243 , SER D:244 , LEU D:247 , TRP D:280 , GLU D:283 , ARG D:287 , TYR D:290 , TRP D:346 , MET D:347 , ASN D:349 , ARG D:352 , LEU D:378 , ASP D:380 , GLY D:381 , ASP D:382 , ALA D:385 , ASN D:386 , GLY D:389 , TRP D:390 , HOH D:8496 , HOH D:8498 , HOH D:8506 , HOH D:8508 , HOH D:8509 , HOH D:8510	BINDING SITE FOR RESIDUE FAD D 8485
16	BC7	SOFTWARE	ARG D:10 , PHE D:35 , CYS D:36 , LEU D:37 , ASP D:38 , ILE D:41 , LEU D:42 , MET D:47 , ARG D:51 , LEU D:55 , ASP D:101 , GLU D:103 , GLY D:106 , ARG D:109 , LYS D:248 , PHE D:249 , HOH D:8488 , HOH D:8588 , HOH D:8598	BINDING SITE FOR RESIDUE HDF D 8486

(no "SS Bond" information available for 1TEZ)

Asymmetric Unit

No.	Residues
1	Asp A:229	-	Pro A:230
2	Asp B:229	-	Pro B:230
3	Asp C:229	-	Pro C:230
4	Asp D:229	-	Pro D:230

(no "SAP(SNP)/Variant" information available for 1TEZ)

Asymmetric Unit (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PHR_CRY_ALPHA_BETA	PS51645	Photolyase/cryptochrome alpha/beta domain profile.	PHR_SYNP6	3-132	4	A:3-132 B:3-132 C:3-132 D:3-132
2	DNA_PHOTOLYASES_1_1	PS00394	DNA photolyases class 1 signature 1.	PHR_SYNP6	329-341	4	A:329-341 B:329-341 C:329-341 D:329-341

Biological Unit 1 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PHR_CRY_ALPHA_BETA	PS51645	Photolyase/cryptochrome alpha/beta domain profile.	PHR_SYNP6	3-132	2	A:3-132 - C:3-132 -
2	DNA_PHOTOLYASES_1_1	PS00394	DNA photolyases class 1 signature 1.	PHR_SYNP6	329-341	2	A:329-341 - C:329-341 -

Biological Unit 2 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PHR_CRY_ALPHA_BETA	PS51645	Photolyase/cryptochrome alpha/beta domain profile.	PHR_SYNP6	3-132	2	- B:3-132 - D:3-132
2	DNA_PHOTOLYASES_1_1	PS00394	DNA photolyases class 1 signature 1.	PHR_SYNP6	329-341	2	- B:329-341 - D:329-341

Biological Unit 3 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PHR_CRY_ALPHA_BETA	PS51645	Photolyase/cryptochrome alpha/beta domain profile.	PHR_SYNP6	3-132	2	- B:3-132 C:3-132 -
2	DNA_PHOTOLYASES_1_1	PS00394	DNA photolyases class 1 signature 1.	PHR_SYNP6	329-341	2	- B:329-341 C:329-341 -

Biological Unit 4 (2, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PHR_CRY_ALPHA_BETA	PS51645	Photolyase/cryptochrome alpha/beta domain profile.	PHR_SYNP6	3-132	3	A:3-132 B:3-132 - D:3-132
2	DNA_PHOTOLYASES_1_1	PS00394	DNA photolyases class 1 signature 1.	PHR_SYNP6	329-341	3	A:329-341 B:329-341 - D:329-341

(no "Exon" information available for 1TEZ)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:474
 aligned with PHR_SYNP6 | P05327 from UniProtKB/Swiss-Prot  Length:484

    Alignment length:474
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471    
            PHR_SYNP6     2 AAPILFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQRYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTELVDLSPEQLTAIAPLLLSELPTLKQLGFDWDGGFPVEPGETAAIARLQEFCDRAIADYDPQRNFPAEAGTSGLSPALKFGAIGIRQAWRAASAAHALSRSDEARNSIRVWQQELAWREFYQHALYHFPSLADGPYRSLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCWMIVASFLTKDLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPKPLRIFNPASQAKKFDATATYIKRWLPELRHVHPKDLISGEITPIGRRGYPAPIVNHNLRQKQFKALYNQLKAAI 475
               SCOP domains d1teza2 A:2-204 DNA photolyase                                                                                                                                                                             d1teza1 A:205-475 C-terminal domain of DNA photolyase                                                                                                                                                                                                                           SCOP domains
               CATH domains 1tezA01 A:2-129 Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1                                                           1tezA02 A:130-164,A:210-297        ---------------------------------------------1tezA02 A:130-164,A:210-297  [code=1.25.40.80, no name defined]                         1tezA03 A:298-473 DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3                                                                                                  -- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeee.........hhhhhhhhh...eeeeeee.hhhh......hhhhhhhhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhh....eeeee....hhhhhhhhhhhhhhhh...eeeee.......hhh...........hhhhhhhhhh.................hhhhhhhhhh........................hhhhhhhhhhhhh.hhhhhhhhhh..........hhhhh.....hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh....hhhh.......hhhhhhhh......hhhhhhhhhhhhh....hhhhhhhhhhhhh.....hhhhhhhhh.......hhhhhhhhhhh..............hhhhhhhh....hhhhhh.hhh....hhhhhh....hhhh.........hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -PHR_CRY_ALPHA_BETA  PDB: A:3-132 UniProt: 3-132                                                                                   ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DNA_PHOTOLYAS-------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1tez A   2 AAPILFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQRYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTELVDLSPEQLTAIAPLLLSELPTLKQLGFDWDGGFPVEPGETAAIARLQEFCDRAIADYDPQRNFPAEAGTSGLSPALKFGAIGIRQAWQAASAAHALSRSDEARNSIRVWQQELAWREFYQHALYHFPSLADGPYRSLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCRMIVASFLTKDLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPKPLRIFNPASQAKKFDATATYIKRWLPELRHVHPKDLISGEITPIERRGYPAPIVNHNLRQKQFKALYNQLKAAI 475
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471

Chain B from PDB  Type:PROTEIN  Length:474
 aligned with PHR_SYNP6 | P05327 from UniProtKB/Swiss-Prot  Length:484

    Alignment length:474
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471    
            PHR_SYNP6     2 AAPILFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQRYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTELVDLSPEQLTAIAPLLLSELPTLKQLGFDWDGGFPVEPGETAAIARLQEFCDRAIADYDPQRNFPAEAGTSGLSPALKFGAIGIRQAWRAASAAHALSRSDEARNSIRVWQQELAWREFYQHALYHFPSLADGPYRSLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCWMIVASFLTKDLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPKPLRIFNPASQAKKFDATATYIKRWLPELRHVHPKDLISGEITPIGRRGYPAPIVNHNLRQKQFKALYNQLKAAI 475
               SCOP domains d1tezb2 B:2-204 DNA photolyase                                                                                                                                                                             d1tezb1 B:205-475 C-terminal domain of DNA photolyase                                                                                                                                                                                                                           SCOP domains
               CATH domains 1tezB01 B:2-129 Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1                                                           1tezB02 B:130-164,B:210-297        ---------------------------------------------1tezB02 B:130-164,B:210-297  [code=1.25.40.80, no name defined]                         1tezB03 B:298-473 DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3                                                                                                  -- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeee.........hhhhhhh.....eeeeeee.hhhh......hhhhhhhhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhh...eeeee.......hhh...........hhhhhhhhhh.................hhhhhhhhhh.......hhhh.............hhhhhhhhhhhhh.hhhhhhhhhh..........hhhhh.....hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh....hhhhh......hhhhhhhh......hhhhhhhhhhhhh....hhhhhhhhhhhhh.....hhhhhhhhh.......hhhhhhhhhhhh.............hhhhhhhh....hhhhhh.hhh....hhhhhh....hhhh.........hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -PHR_CRY_ALPHA_BETA  PDB: B:3-132 UniProt: 3-132                                                                                   ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DNA_PHOTOLYAS-------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1tez B   2 AAPILFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQRYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTELVDLSPEQLTAIAPLLLSELPTLKQLGFDWDGGFPVEPGETAAIARLQEFCDRAIADYDPQRNFPAEAGTSGLSPALKFGAIGIRQAWQAASAAHALSRSDEARNSIRVWQQELAWREFYQHALYHFPSLADGPYRSLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCRMIVASFLTKDLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPKPLRIFNPASQAKKFDATATYIKRWLPELRHVHPKDLISGEITPIERRGYPAPIVNHNLRQKQFKALYNQLKAAI 475
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471

Chain C from PDB  Type:PROTEIN  Length:474
 aligned with PHR_SYNP6 | P05327 from UniProtKB/Swiss-Prot  Length:484

    Alignment length:474
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471    
            PHR_SYNP6     2 AAPILFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQRYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTELVDLSPEQLTAIAPLLLSELPTLKQLGFDWDGGFPVEPGETAAIARLQEFCDRAIADYDPQRNFPAEAGTSGLSPALKFGAIGIRQAWRAASAAHALSRSDEARNSIRVWQQELAWREFYQHALYHFPSLADGPYRSLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCWMIVASFLTKDLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPKPLRIFNPASQAKKFDATATYIKRWLPELRHVHPKDLISGEITPIGRRGYPAPIVNHNLRQKQFKALYNQLKAAI 475
               SCOP domains d1tezc2 C:2-204 DNA photolyase                                                                                                                                                                             d1tezc1 C:205-475 C-terminal domain of DNA photolyase                                                                                                                                                                                                                           SCOP domains
               CATH domains 1tezC01 C:2-129 Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1                                                           1tezC02 C:130-164,C:210-297        ---------------------------------------------1tezC02 C:130-164,C:210-297  [code=1.25.40.80, no name defined]                         1tezC03 C:298-473 DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3                                                                                                  -- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeee.........hhhhhhh.....eeeeeee.hhhh......hhhhhhhhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhh...eeeee.......hhh...........hhhhhhhhhh.................hhhhhhhhhh.......hhhh.............hhhhhhhhhhhhh.hhhhhhhhhh..........hhhhh.....hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh....hhhhh......hhhhhhhh......hhhhhhhhhhhhh....hhhhhhhhhhhhh.....hhhhhhhhh.......hhhhhhhhhhhh.............hhhhhhhh....hhhhhh.hhh....hhhhhh.................hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -PHR_CRY_ALPHA_BETA  PDB: C:3-132 UniProt: 3-132                                                                                   ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DNA_PHOTOLYAS-------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1tez C   2 AAPILFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQRYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTELVDLSPEQLTAIAPLLLSELPTLKQLGFDWDGGFPVEPGETAAIARLQEFCDRAIADYDPQRNFPAEAGTSGLSPALKFGAIGIRQAWQAASAAHALSRSDEARNSIRVWQQELAWREFYQHALYHFPSLADGPYRSLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCRMIVASFLTKDLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPKPLRIFNPASQAKKFDATATYIKRWLPELRHVHPKDLISGEITPIERRGYPAPIVNHNLRQKQFKALYNQLKAAI 475
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471

Chain D from PDB  Type:PROTEIN  Length:474
 aligned with PHR_SYNP6 | P05327 from UniProtKB/Swiss-Prot  Length:484

    Alignment length:474
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471    
            PHR_SYNP6     2 AAPILFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQRYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTELVDLSPEQLTAIAPLLLSELPTLKQLGFDWDGGFPVEPGETAAIARLQEFCDRAIADYDPQRNFPAEAGTSGLSPALKFGAIGIRQAWRAASAAHALSRSDEARNSIRVWQQELAWREFYQHALYHFPSLADGPYRSLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCWMIVASFLTKDLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPKPLRIFNPASQAKKFDATATYIKRWLPELRHVHPKDLISGEITPIGRRGYPAPIVNHNLRQKQFKALYNQLKAAI 475
               SCOP domains d1tezd2 D:2-204 DNA photolyase                                                                                                                                                                             d1tezd1 D:205-475 C-terminal domain of DNA photolyase                                                                                                                                                                                                                           SCOP domains
               CATH domains 1tezD01 D:2-129 Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1                                                           1tezD02 D:130-164,D:210-297        ---------------------------------------------1tezD02 D:130-164,D:210-297  [code=1.25.40.80, no name defined]                         1tezD03 D:298-473 DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3                                                                                                  -- CATH domains
           Pfam domains (1) ---DNA_photolyase-1tezD01 D:5-170                                                                                                                                        -------------------------------------FAD_binding_7-1tezD05 D:208-472                                                                                                                                                                                                                                          --- Pfam domains (1)
           Pfam domains (2) ---DNA_photolyase-1tezD02 D:5-170                                                                                                                                        -------------------------------------FAD_binding_7-1tezD06 D:208-472                                                                                                                                                                                                                                          --- Pfam domains (2)
           Pfam domains (3) ---DNA_photolyase-1tezD03 D:5-170                                                                                                                                        -------------------------------------FAD_binding_7-1tezD07 D:208-472                                                                                                                                                                                                                                          --- Pfam domains (3)
           Pfam domains (4) ---DNA_photolyase-1tezD04 D:5-170                                                                                                                                        -------------------------------------FAD_binding_7-1tezD08 D:208-472                                                                                                                                                                                                                                          --- Pfam domains (4)
         Sec.struct. author ...eeeee.........hhhhhhh.....eeeeeee.hhhh......hhhhhhhhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhh....eeeee....hhhhhhhhhhhhhhhh...eeeee.......hhh...........hhhhhhhhhh.................hhhhhhhhhh........................hhhhhhhhhhhhh.hhhhhhhhhh..........hhhhh.....hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh...............hhhhhhhh......hhhhhhhhhhhhh....hhhhhhhhhhhhh.....hhhhhhhhh.......hhhhhhhhhhhh.............hhhhhhhh....hhhhhh.hhh....hhhhhh....hhhh.........hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -PHR_CRY_ALPHA_BETA  PDB: D:3-132 UniProt: 3-132                                                                                   ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DNA_PHOTOLYAS-------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1tez D   2 AAPILFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQRYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTELVDLSPEQLTAIAPLLLSELPTLKQLGFDWDGGFPVEPGETAAIARLQEFCDRAIADYDPQRNFPAEAGTSGLSPALKFGAIGIRQAWQAASAAHALSRSDEARNSIRVWQQELAWREFYQHALYHFPSLADGPYRSLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCRMIVASFLTKDLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPKPLRIFNPASQAKKFDATATYIKRWLPELRHVHPKDLISGEITPIERRGYPAPIVNHNLRQKQFKALYNQLKAAI 475
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471

Chain I from PDB  Type:DNA  Length:8
                                        
                 1tez I   1 ATCGGCTx  12
                                  ||
                                  7|
                                  12-TCP

Chain J from PDB  Type:DNA  Length:9
                                         
                 1tez J   6 CGAAGCCGA  14

Chain K from PDB  Type:DNA  Length:8
                                        
                 1tez K   1 ATCGGCTx  12
                                  ||
                                  7|
                                  12-TCP

Chain L from PDB  Type:DNA  Length:9
                                         
                 1tez L   6 CGAAGCCGA  14

Chain M from PDB  Type:DNA  Length:4
                                    
                 1tez M   8 TCGC  11

Chain N from PDB  Type:DNA  Length:5
                                     
                 1tez N  10 GCCGA  14

Chain O from PDB  Type:DNA  Length:4
                                    
                 1tez O   8 TCGC  11

Chain P from PDB  Type:DNA  Length:5
                                     
                 1tez P  10 GCCGA  14

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1 (328)

[unclassified] (27)

1a	1tezA01	A:2-129
1b	1tezB01	B:2-129
1c	1tezC01	C:2-129
1d	1tezD01	D:2-129

Class: Mainly Alpha (13335)

Architecture: Alpha Horseshoe (399)

Topology: Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat (320)

Homologous Superfamily: [code=1.25.40.80, no name defined] (16)

[unclassified] (1)

2a	1tezA02	A:130-164,A:210-297
2b	1tezB02	B:130-164,B:210-297
2c	1tezC02	C:130-164,C:210-297
2d	1tezD02	D:130-164,D:210-297

Architecture: Orthogonal Bundle (10391)

Topology: DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3 (16)

Homologous Superfamily: DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 (16)

[unclassified] (1)

3a	1tezA03	A:298-473
3b	1tezB03	B:298-473
3c	1tezC03	C:298-473
3d	1tezD03	D:298-473

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (PHR_SYNP6 | P05327)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0003904	deoxyribodipyrimidine photo-lyase activity	Catalysis of the reaction: cyclobutadipyrimidine (in DNA) = 2 pyrimidine residues (in DNA). This reaction represents the reactivation of irradiated DNA by light.
	GO:0016829	lyase activity	Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
	GO:0006281	DNA repair	The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
	GO:0006974	cellular response to DNA damage stimulus	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
	GO:0018298	protein-chromophore linkage	The covalent or noncovalent attachment of a chromophore to a protein.

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	Cis Peptide Bonds
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		Asp C:229 - Pro C:230	[ RasMol ]
		Asp D:229 - Pro D:230	[ RasMol ]

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	1tez
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	PHR_SYNP6 \| P05327	:	1owl 1owm 1own 1owo 1owp 1qnf

(no "Related Entries Specified in the PDB File" available for 1TEZ)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (6, 18)

Sites (16, 16)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 8)

Exons (0, 0)

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