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(-) Description

Title :  CRYSTAL STRUCTURE ANALYSIS OF THE MINOR GROOVE BINDING QUINOLINIUM QUATERNARY SALT SN 8224 COMPLEXED WITH CGCGAATTCGCG
 
Authors :  A. Adams, C. Leong, W. A. Denny, J. M. Guss
Date :  16 May 05  (Deposition) - 11 Oct 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A,B
Keywords :  B-Dna, Dodecamer, Minor Groove Binding Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Adams, C. Leong, W. A. Denny, J. M. Guss
Structures Of Two Minor-Groove-Binding Quinolinium Quaternary Salts Complexed With D(Cgcgaattcgcg)(2) At 1. 6 And 1. 8 Angstrom Resolution.
Acta Crystallogr. , Sect. D V. 61 1348 2005
PubMed-ID: 16204886  |  Reference-DOI: 10.1107/S0907444905022997
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'
    Chains: A, B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1MG1Ligand/IonMAGNESIUM ION
2SN91Ligand/Ion8-METHOXY-1-METHYL-4-(4-(4-(1-METHYLPYRIDINIUM-4-YLAMINO)PHENYLCARBAMOYL)PHENYLAMINO)QUINOLINIUM

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDG A:4 , DA A:5 , DA A:6 , DT A:7 , DT A:8 , DC A:9 , DG A:12 , HOH A:151 , DA B:18 , DT B:19 , DT B:20 , DC B:21 , DG B:22 , DC B:23BINDING SITE FOR RESIDUE SN9 B 200
2AC2SOFTWAREHOH A:102 , HOH A:104 , HOH A:116 , HOH A:144 , HOH B:113 , HOH B:115BINDING SITE FOR RESIDUE MG A 100

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1ZPI)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1ZPI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 1ZPI)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:12
                                           
                  1zpi A  1 CGCGAATTCGCG 12
                                    10  


Chain B from PDB  Type:DNA  Length:12
                                           
                  1zpi B 13 CGCGAATTCGCG 24
                                    22
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1ZPI)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

1zph