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(-) Description

Title :  2.4 ANGSTROM CRYSTAL STRUCTURE OF THE ASYMMETRIC PLATINUM COMPLEX {PT(AMMINE)(CYCLOHEXYLAMINE)}2+ BOUND TO A DODECAMER DNA DUPLEX
 
Authors :  A. P. Silverman, W. Bu, S. M. Cohen, S. J. Lippard
Date :  21 May 02  (Deposition) - 20 Dec 02  (Release) - 08 Feb 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Platinum-Dna Complex, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. P. Silverman, W. Bu, S. M. Cohen, S. J. Lippard
2. 4-A Crystal Structure Of The Asymmetric Platinum Complex {Pt(Ammine)(Cyclohexylamine)}2+ Bound To A Dodecamer Dna Duplex
J. Biol. Chem. V. 277 49743 2002
PubMed-ID: 12377787  |  Reference-DOI: 10.1074/JBC.M206979200

(-) Compounds

Molecule 1 - 5'-D(*CP*CP*TP*CP*TP*GP*GP*TP*CP*TP*CP*C)-3'
    ChainsA, C
    EngineeredYES
    SyntheticYES
 
Molecule 2 - 5'-D(*GP*GP*AP*GP*AP*CP*CP*AP*GP*AP*GP*G)-3'
    ChainsB, D
    EngineeredYES
    SyntheticYES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)AB  
Biological Unit 2 (1x)  CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1LPT2Ligand/IonCIS-(AMMINE)(CYCLOHEXYLAMINE)PLATINUM(II) COMPLEX
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1LPT1Ligand/IonCIS-(AMMINE)(CYCLOHEXYLAMINE)PLATINUM(II) COMPLEX
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1LPT1Ligand/IonCIS-(AMMINE)(CYCLOHEXYLAMINE)PLATINUM(II) COMPLEX

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDG A:6 , DG A:7 , DT A:8 , HOH A:204 , HOH A:222BINDING SITE FOR RESIDUE LPT A 49
2AC2SOFTWAREDT C:29 , DG C:30 , DG C:31 , DT C:32BINDING SITE FOR RESIDUE LPT C 50

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1LU5)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1LU5)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:12
                                           
                  1lu5 A  1 CCTCTGGTCTCC 12
                                    10  

Chain B from PDB  Type:DNA  Length:12
                                           
                  1lu5 B 13 GGAGACCAGAGG 24
                                    22  

Chain C from PDB  Type:DNA  Length:12
                                           
                  1lu5 C 25 CCTCTGGTCTCC 36
                                    34  

Chain D from PDB  Type:DNA  Length:12
                                           
                  1lu5 D 37 GGAGACCAGAGG 48
                                    46  

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1LU5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1LU5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1LU5)

(-) Gene Ontology  (0, 0)

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