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(-) Description

Title :  THE CRYSTAL STRUCTURE ANALYSIS OF D(CGCGAASSCGCG)2: A SYNTHETIC DNA DODECAMER DUPLEX CONTAINING FOUR 4'-THIO-2'-DEOXYTHYMIDINE NUCLEOTIDES
 
Authors :  T. J. Boggon, E. L. Hancox, K. E. Mcauley-Hecht, B. A. Connolly, W. N. Hunter, T. Brown, R. T. Walker, G. A. Leonard
Date :  16 Oct 95  (Deposition) - 21 Jun 96  (Release) - 16 Jun 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A,B
Keywords :  B-Dna, Double Helix, Modified (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. J. Boggon, E. L. Hancox, K. E. Mcauley-Hecht, B. A. Connolly, W. N. Hunter, T. Brown, R. T. Walker, G. A. Leonard
The Crystal Structure Analysis Of D(Cgcgaasscgcg)2, A Synthetic Dna Dodecamer Duplex Containing Four 4'-Thio-2'-Deoxythymidine Nucleotides.
Nucleic Acids Res. V. 24 951 1996
PubMed-ID: 8600465  |  Reference-DOI: 10.1093/NAR/24.5.951
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA (5'-D(*CP*GP*CP*GP*AP*AP*)-D(*(T49)P*(T49) P*)-D(*CP*GP*CP*G)-3')
    Chains: A, B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1T494Mod. NucleotideS4'-2'DEOXYTHYMIDINE 5'-MONOPHOSPHATE

(-) Sites  (0, 0)

(no "Site" information available for 233D)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 233D)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 233D)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 233D)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 233D)

(-) Exons   (0, 0)

(no "Exon" information available for 233D)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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Chain A from PDB  Type:DNA  Length:12
                                           
                  233d A  1 CGCGAAttCGCG 12
                                  ||10  
                                  7-T49 
                                   8-T49


Chain B from PDB  Type:DNA  Length:12
                                           
                  233d B 13 CGCGAAttCGCG 24
                                  ||22  
                                 19-T49 
                                  20-T49
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 233D)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 233D)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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  233d
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 Related Entries

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