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(-) Description

Title :  X-RAY STRUCTURAL ANALYSIS OF B-DNA DECAMER D(CCATTAATGG)2 CRYSTAL GROWN IN D2O SOLUTION
 
Authors :  S. Arai, T. Chatake, T. Ohhara, K. Kurihara, I. Tanaka, N. Suzuki, Z. Fuj H. Mizuno, N. Niimura
Date :  07 Oct 04  (Deposition) - 21 Jun 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  B-Dna, Hydration, Hydrogen, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Arai, T. Chatake, T. Ohhara, K. Kurihara, I. Tanaka, N. Suzuki, Z. Fujimoto, H. Mizuno, N. Niimura
Complicated Water Orientations In The Minor Groove Of The B-Dna Decamer D(Ccattaatgg)2 Observed By Neutron Diffractio Measurements
Nucleic Acids Res. V. 33 3017 2005
PubMed-ID: 15914673  |  Reference-DOI: 10.1093/NAR/GKI616

(-) Compounds

Molecule 1 - 5'-D(*CP*CP*AP*TP*TP*AP*AP*TP*GP*G)-3'
    Chains: A, B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 87)

Asymmetric/Biological Unit (1, 87)
No.NameCountTypeFull Name
1DOD87Ligand/Ion

(-) Sites  (0, 0)

(no "Site" information available for 1WQY)

(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:10
                                         
                  1wqy A  1 CCATTAATGG 10
                                    10


Chain B from PDB  Type:DNA  Length:10
                                         
                  1wqy B 11 CCATTAATGG 20
                                    20
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1WQY)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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 Related Entries

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(-) Related Entries Specified in the PDB File

167d 167D CONTAINS X-RAY CRYSTAL STRUCTURE OF THE SAME DNA DECAMER
1wqz OBSERVED BY NEUTRON DIFFRACTION MEASUREMENTS