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(-) Description

Title :  MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGMO6AATTCGCG) AT 1.6 ANGSTROM
 
Authors :  T. Chatake, T. Hikima, A. Ono, Y. Ueno, A. Matsuda, A. Takenaka
Date :  28 Jan 00  (Deposition) - 16 Feb 00  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A,B
Keywords :  B-Dna, Double Helix, Deoxyribonucleic Acid, Modified Nucleotide, Methoxyadenosine, Damaged Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Chatake, T. Hikima, A. Ono, Y. Ueno, A. Matsuda, A. Takenaka
Crystallographic Studies On Damaged Dnas. Ii. N(6)-Methoxyadenine Can Present Two Alternate Faces For Watson-Crick Base-Pairing, Leading To Pyrimidine Transition Mutagenesis.
J. Mol. Biol. V. 294 1223 1999
PubMed-ID: 10600380  |  Reference-DOI: 10.1006/JMBI.1999.3304
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-D(*CP*GP*CP*GP*(A47)AP*AP*TP*TP*CP*GP*CP*G)- 3'
    Chains: A, B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric/Biological Unit (3, 4)
No.NameCountTypeFull Name
1A472Mod. NucleotideN6-METHOXY ADENOSINE 5'-MONOPHOSPHATE
2MG1Ligand/IonMAGNESIUM ION
3SPM1Ligand/IonSPERMINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDG A:10 , HOH A:48 , HOH A:103 , DG B:14 , DC B:15 , DC B:23 , DG B:24BINDING SITE FOR RESIDUE SPM B 25
2AC2SOFTWAREHOH A:147 , HOH A:148 , HOH A:150 , HOH A:152 , HOH B:149 , HOH B:151BINDING SITE FOR RESIDUE MG A 26

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1EDR)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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Chain A from PDB  Type:DNA  Length:12
                                           
                  1edr A  1 CGCGaATTCGCG 12
                                |   10  
                                |       
                                5-A47   


Chain B from PDB  Type:DNA  Length:12
                                           
                  1edr B 13 CGCGaATTCGCG 24
                                |   22  
                               17-A47
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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