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(-) Description

Title :  STRUCTURAL PARAMETERS FROM SINGLE-CRYSTAL STRUCTURES FOR ACCURATE MODELS OF A-DNA
 
Authors :  B. H. M. Mooers, B. F. Eichman, P. S. Ho
Date :  26 Jun 97  (Deposition) - 21 Jul 97  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  A-Dna, Double Helix, Modified (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. H. M. Mooers, B. F. Eichman, P. S. Ho
Structural Parameters From Single-Crystal Structures For Accurate Models Of A-Dna
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA (5'-D(*GP*(5CM)P*GP*CP*GP*CP*GP*C)-3')
    Chains: A
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
15CM1Mod. Nucleotide5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
15CM2Mod. Nucleotide5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE

(-) Sites  (0, 0)

(no "Site" information available for 338D)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 338D)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 338D)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 338D)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 338D)

(-) Exons   (0, 0)

(no "Exon" information available for 338D)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:DNA  Length:8
                                      
                   338d A 1 GcGCGCGC 8
                             |      
                             |      
                             2-5CM
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 338D)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 338D)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 338D)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 338D)

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  338d
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 338D)