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(-) Description

Title :  1.05 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-FLUOROETHYL THYMINE IN PLACE OF T6, HIGH RB-SALT
 
Authors :  V. Tereshko, C. J. Wilds, G. Minasov, T. P. Prakash, M. A. Maier, A. Howard, Z. Wawrzak, M. Manoharan, M. Egli
Date :  29 Jan 01  (Deposition) - 04 Apr 01  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.05
Chains :  Asym./Biol. Unit :  A,B
Keywords :  A-Form Double Helix, Modified Sugar, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Tereshko, C. J. Wilds, G. Minasov, T. P. Prakash, M. A. Maier, A. Howard, Z. Wawrzak, M. Manoharan, M. Egli
Detection Of Alkali Metal Ions In Dna Crystals Using State-Of-The-Art X-Ray Diffraction Experiments.
Nucleic Acids Res. V. 29 1208 2001
PubMed-ID: 11222771  |  Reference-DOI: 10.1093/NAR/29.5.1208
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-D(*GP*CP*GP*TP*AP*(125)P*AP*CP*GP*C)-3'
    Chains: A, B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
11252Mod. Nucleotide2'-O-FLUOROETHYL-5-METHYL-URIDINE-5'-MONOPHOSPHATE
2RB3Ligand/IonRUBIDIUM ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDG A:9 , DC A:10 , HOH A:145 , DT B:14 , DA B:15 , DC B:20 , HOH B:140 , HOH B:182 , HOH B:250BINDING SITE FOR RESIDUE RB A 21
2AC2SOFTWAREDG A:3 , DT A:4 , HOH A:136BINDING SITE FOR RESIDUE RB A 22
3AC3SOFTWAREDC A:10 , HOH A:175 , HOH A:185 , HOH A:195 , DT B:14 , DC B:20 , HOH B:127BINDING SITE FOR RESIDUE RB A 23

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1I0M)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1I0M)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
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Chain A from PDB  Type:DNA/RNA  Length:10
                                         
                  1i0m A  1 GCGTAuACGC 10
                                 |  10
                                 6-125


Chain B from PDB  Type:DNA/RNA  Length:10
                                         
                  1i0m B 11 GCGTAuACGC 20
                                 |  20
                                16-125
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1I0M)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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