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Asym./Biol. Unit - manually (Jmol Viewer)

Asym./Biol. Unit (Jmol Viewer)

Title :   CLEAVED SUBSTRATE VARIANT OF PLASMINOGEN ACTIVATOR INHIBITOR-1

Authors :   K. Aertgeerts, H. L. De Bondt, C. J. De Ranter, P. J. Declerck

Date :   11 Mar 99 (Deposition) - 19 Mar 99 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.70

Chains :   Asym./Biol. Unit : A,B

Keywords :   Serpin, Hydrolase Inhibitor (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. Aertgeerts, H. L. De Bondt, C. J. De Ranter, P. J. Declerck
Mechanisms Contributing To The Conformational And Functiona Flexibility Of Plasminogen Activator Inhibitor-1.
Nat. Struct. Biol. V. 2 891 1995
PubMed-ID: 7552714 | Reference-DOI: 10.1038/NSB1095-891

Molecule 1 - PROTEIN (PLASMINOGEN ACTIVATOR INHIBITOR-1) RESIDUES 19- 364
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Other Details	:	CLEAVED SUBSTRATE VARIANT

Molecule 2 - PROTEIN (PLASMINOGEN ACTIVATOR INHIBITOR-1) RESIDUES 365- 397
	Chains	:	B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Other Details	:	CLEAVED SUBSTRATE VARIANT

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 9PAI)

(no "Site" information available for 9PAI)

(no "SS Bond" information available for 9PAI)

(no "Cis Peptide Bond" information available for 9PAI)

(no "SAP(SNP)/Variant" information available for 9PAI)

(no "PROSITE Motif" information available for 9PAI)

(no "Exon" information available for 9PAI)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:346
                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains d9paia_ A: Plasminogen activator inhibitor-1                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 9paiA01 A:19-188,A:299-343,A:354-364 Antithrombin, subunit I, domain 2                                                                                                    9paiA02 A:189-298,A:344-353 Alpha-1-antitrypsin, domain 1                                                     9paiA01 A:19-188,A:299-343,A:354-364         9paiA02   9paiA01     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhh.....eee.hhhhhhhhhhhhhh..hhhhhhhhhhh........hhhhhhhhhhhh..hhh......eeeeeee........hhhhhhhh...eeeee....hhhhhhhhhhhhhhh...................eeeeeeee..........hhh.eeeeee.....eeeeeeeeeeeeeeeeeee.....eeeeeeee.....eeeeeeee......hhhhhhh..hhhhhhhhhh.eeeeeeeeee.eeeeeeeehhhhhhhh.......................eeeeeeeeeeee.......eeeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 9pai A  19 VHHPPSYVAHLASDFGVRVFQQVAQASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKIDDKGMAPALRHLYKELMGPWNKDEISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSEVERARFIINDWVKTHTKGMISNLLGKGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKFNYTEFTTPDGHYYDILELPYHGDTLSMFIAAPYEKEVPLSALTNILSAQLISHWKGNMTRLPRLLVLPKFSLETEVDLRKPLENLGMTDMFRQFQADFTSLSDQEPLHVAQALQKVKIEVNESGTVPSSSTAVIVSAR 364
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358

Chain B from PDB  Type:PROTEIN  Length:33
                                                                 
               SCOP domains --------------------------------- SCOP domains
               CATH domains --------------------------------- CATH domains
               Pfam domains --------------------------------- Pfam domains
         Sec.struct. author ................................. Sec.struct. author
                 SAPs(SNPs) --------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------- PROSITE
                 Transcript --------------------------------- Transcript
                 9pai B 365 MAPEEIIMDRPFLFVVRHNPTGTVLFMGQVMEP 397
                                   374       384       394

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

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Protein Domains( (-)

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Organisms( (-)

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Class: Multi-domain proteins (alpha and beta) (2421)

Fold: Serpins (120)

Superfamily: Serpins (120)

Family: Serpins (100)

Protein domain: Plasminogen activator inhibitor-1 (16)

Human (Homo sapiens) [TaxId: 9606] (14)

d9paia_

Asymmetric/Biological Unit

Classes(

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Architectures( (-)

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Topologies( (-)

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Homologous Superfamilies( (-)

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Organisms( (-)

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Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Antithrombin; Chain I, domain 2 (100)

Homologous Superfamily: Antithrombin, subunit I, domain 2 (100)

Human (Homo sapiens) (80)

9paiA01

A:19-188,A:299-343,A:354-364

Class: Mainly Beta (13760)

Architecture: Roll (1513)

Topology: Alpha-1-antitrypsin; domain 1 (101)

Homologous Superfamily: Alpha-1-antitrypsin, domain 1 (101)

Human (Homo sapiens) (81)

9paiA02

A:189-298,A:344-353

(no "Pfam Domain" information available for 9PAI)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
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