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(-) Description

Title :  SCYTALONE DEHYDRATASE PLUS INHIBITOR 4
 
Authors :  Z. Wawrzak, T. Sandalova, J. J. Steffens, G. S. Basarab, T. Lundqvist, Y. Lindqvist, D. B. Jordan
Date :  11 Feb 99  (Deposition) - 29 Dec 99  (Release) - 21 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  A,B,C  (2x)
Keywords :  Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. Wawrzak, T. Sandalova, J. J. Steffens, G. S. Basarab, T. Lundqvist, Y. Lindqvist, D. B. Jordan
High-Resolution Structures Of Scytalone Dehydratase-Inhibitor Complexes Crystallized At Physiological Ph.
Proteins V. 35 425 1999

(-) Compounds

Molecule 1 - SCYTALONE DEHYDRATASE
    Chains: A, B, C
    EC Number: 4.2.1.94
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: MAGNAPORTHE GRISEA
    Organism Taxid: 148305
    Synonym: SDH

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): ABC
Biological Unit 2 (2x): ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric Unit (2, 8)
No.NameCountTypeFull Name
1CA5Ligand/IonCALCIUM ION
2CRP3Ligand/Ion((1RS,3SR)-2,2-DICHLORO-N-[(R)-1-(4-CHLOROPHENYL)ETHYL]-1-ETHYL-3-METHYLCYCLOPROPANECARBOXAMIDE
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CRP3Ligand/Ion((1RS,3SR)-2,2-DICHLORO-N-[(R)-1-(4-CHLOROPHENYL)ETHYL]-1-ETHYL-3-METHYLCYCLOPROPANECARBOXAMIDE
Biological Unit 2 (1, 6)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CRP6Ligand/Ion((1RS,3SR)-2,2-DICHLORO-N-[(R)-1-(4-CHLOROPHENYL)ETHYL]-1-ETHYL-3-METHYLCYCLOPROPANECARBOXAMIDE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:163 , ASP A:164 , GLU A:167BINDING SITE FOR RESIDUE CA A 501
2AC2SOFTWAREARG B:51 , ASP B:55 , GLU B:59 , HOH B:683BINDING SITE FOR RESIDUE CA B 501
3AC3SOFTWAREASP B:171 , HOH B:645 , HOH B:656 , HOH B:680BINDING SITE FOR RESIDUE CA B 502
4AC4SOFTWAREARG C:51 , ASP C:55 , GLU C:59 , HOH C:669 , HOH C:709 , HOH C:744BINDING SITE FOR RESIDUE CA C 501
5AC5SOFTWAREASP C:171 , HOH C:634 , HOH C:648 , HOH C:650 , HOH C:664 , HOH C:708 , HOH C:743BINDING SITE FOR RESIDUE CA C 502
6AC6SOFTWARETYR A:50 , PHE A:53 , VAL A:75 , LEU A:76 , VAL A:108 , ASN A:131 , PRO A:149 , ILE A:151 , GLY A:165 , HOH A:628BINDING SITE FOR RESIDUE CRP A 600
7AC7SOFTWARETRP B:26 , TYR B:50 , PHE B:53 , VAL B:75 , VAL B:108 , ASN B:131 , PRO B:149 , ILE B:151 , GLY B:165 , HOH B:610BINDING SITE FOR RESIDUE CRP B 601
8AC8SOFTWARETRP C:26 , TYR C:50 , PHE C:53 , LEU C:76 , VAL C:108 , ASN C:131 , GLY C:165 , HOH C:613BINDING SITE FOR RESIDUE CRP C 602

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 7STD)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 7STD)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 7STD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 7STD)

(-) Exons   (0, 0)

(no "Exon" information available for 7STD)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:164
                                                                                                                                                                                                    
               SCOP domains d7stda_ A: Scytalone dehydratase                                                                                                                                     SCOP domains
               CATH domains 7stdA00 A:9-172  [code=3.10.450.50, no name defined]                                                                                                                 CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhh..hhhhhhh.....eeeehhhh.eee....hhhhhhhh..........eeeeeee..eeeeeee..eeeeeeeeeeeeeee.......eeeeeeeeeeeeeeeeee..eeee.eee..eeeeee.hhhh.hhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 7std A   9 GEITFSDYLGLMTCVYEWADSYDSKDWDRLRKVIAPTLRIDYRSFLDKLWEAMPAEEFVGMVSSKQVLGDPTLRTQHFIGGTRWEKVSEDEVIGYHQLRVPHQRYKDTTMKEVTMKGHAHSANLHWYKKIDGVWKFAGLKPDIRWGEFDFDRIFEDGRETFGDK 172
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168    


Chain B from PDB  Type:PROTEIN  Length:164
                                                                                                                                                                                                    
               SCOP domains d7stdb_ B: Scytalone dehydratase                                                                                                                                     SCOP domains
               CATH domains 7stdB00 B:9-172  [code=3.10.450.50, no name defined]                                                                                                                 CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhh..hhhhh........eeehhhh.eee....hhhhhhhh..........eeeeeee..eeeeeee..eeeeeeeeeeeeeee.......eeeeeeeeeeeeeeeeee..eeee..eeeeeeeeee.hhhh.hhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 7std B   9 GEITFSDYLGLMTCVYEWADSYDSKDWDRLRKVIAPTLRIDYRSFLDKLWEAMPAEEFVGMVSSKQVLGDPTLRTQHFIGGTRWEKVSEDEVIGYHQLRVPHQRYKDTTMKEVTMKGHAHSANLHWYKKIDGVWKFAGLKPDIRWGEFDFDRIFEDGRETFGDK 172
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168    


Chain C from PDB  Type:PROTEIN  Length:164
                                                                                                                                                                                                    
               SCOP domains d7stdc_ C: Scytalone dehydratase                                                                                                                                     SCOP domains
               CATH domains 7stdC00 C:9-172  [code=3.10.450.50, no name defined]                                                                                                                 CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhh..hhhhhhh......eeehhhh.eee....hhhhhhhh..........eeeeeee..eeeeeee..eeeeeeeeeeeeeee.......eeeeeeeeeeeeeeeeee..eeee......eeeeee.hhhh.hhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 7std C   9 GEITFSDYLGLMTCVYEWADSYDSKDWDRLRKVIAPTLRIDYRSFLDKLWEAMPAEEFVGMVSSKQVLGDPTLRTQHFIGGTRWEKVSEDEVIGYHQLRVPHQRYKDTTMKEVTMKGHAHSANLHWYKKIDGVWKFAGLKPDIRWGEFDFDRIFEDGRETFGDK 172
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 3)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 7STD)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)

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