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(-) Description

Title :  RECOMBINANT HORSERADISH PEROXIDASE C1A COMPLEX WITH CYANIDE AND FERULIC ACID
 
Authors :  A. Henriksen, A. T. Smith, M. Gajhede
Date :  26 Apr 99  (Deposition) - 14 Jan 00  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.47
Chains :  Asym./Biol. Unit :  A
Keywords :  Peroxidase, Oxidoreductase, Cyanide, Ferulic Acid (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Henriksen, A. T. Smith, M. Gajhede
The Structures Of The Horseradish Peroxidase C-Ferulic Acid Complex And The Ternary Complex With Cyanide Suggest How Peroxidases Oxidize Small Phenolic Substrates.
J. Biol. Chem. V. 274 35005 1999
PubMed-ID: 10574977  |  Reference-DOI: 10.1074/JBC.274.49.35005
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PEROXIDASE C1A
    Chains: A
    EC Number: 1.11.1.7
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: ARMORACIA RUSTICANA
    Organism Taxid: 3704
    Other Details: SYNTHETIC GENE
    Synonym: HORSERADISH PEROXIDASE C1A, HRP C

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 6)

Asymmetric/Biological Unit (4, 6)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION
2CYN1Ligand/IonCYANIDE ION
3FER2Ligand/Ion3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC ACID
4HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:43 , VAL A:46 , GLY A:48 , ASP A:50 , SER A:52 , HOH A:1001BINDING SITE FOR RESIDUE CA A 501
2AC2SOFTWARETHR A:171 , ASP A:222 , THR A:225 , ILE A:228 , ASP A:230BINDING SITE FOR RESIDUE CA A 502
3AC3SOFTWAREARG A:38 , PHE A:41 , HIS A:42 , HEM A:350 , FER A:702 , HOH A:1054BINDING SITE FOR RESIDUE CYN A 601
4AC4SOFTWAREARG A:31 , ALA A:34 , SER A:35 , ARG A:38 , PHE A:41 , SER A:73 , PRO A:139 , ALA A:140 , PRO A:141 , PHE A:152 , LEU A:166 , SER A:167 , GLY A:169 , HIS A:170 , GLY A:173 , LYS A:174 , ASN A:175 , GLN A:176 , PHE A:179 , PHE A:221 , ILE A:244 , SER A:246 , CYN A:601 , FER A:702 , HOH A:1005 , HOH A:1163BINDING SITE FOR RESIDUE HEM A 350
5AC5SOFTWAREASN A:13 , ASN A:16 , ILE A:17 , ASP A:20 , ARG A:224 , THR A:225 , LYS A:232BINDING SITE FOR RESIDUE FER A 701
6AC6SOFTWAREARG A:38 , GLY A:69 , SER A:73 , PRO A:139 , ALA A:140 , PHE A:142 , PHE A:179 , HEM A:350 , CYN A:601 , HOH A:1054BINDING SITE FOR RESIDUE FER A 702
7CAAAUTHORASP A:43 , VAL A:46 , GLY A:48 , ASP A:50 , SER A:52 , HOH A:1445DISTAL CALCIUM SITE
8CABAUTHORTHR A:171 , ASP A:222 , THR A:225 , ILE A:228 , ASP A:230PROXIMAL CALCIUM SITE

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1A:11 -A:91
2A:44 -A:49
3A:97 -A:301
4A:177 -A:209

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 7ATJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 7ATJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 7ATJ)

(-) Exons   (0, 0)

(no "Exon" information available for 7ATJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:305
                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains d7atja_ A: Plant peroxidase                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains -7atjA01 A:2-138,A:285-305  [code=1.10.520.10, no name defined]                                                                           7atjA02 A:139-284 Peroxidase, domain 2                                                                                                            7atjA01               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhhhhhhhh...hhhhhhhhhhhhh.......hhh.........hhh..........hhhhhhhhhhhhhh......hhhhhhhhhhhhhhh...................hhhhhhh.......hhhhhhhhhhh....hhhhhhhhhhhh..eeehhhhhhhhh.hhh.........hhhhhhhhhh.........eee..........hhhhhhhhh.....hhhhhhhh....hhhhhhhhhhhh.hhhhhhhhhhhhhhhhh................... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 7atj A   1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVN 305
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 7ATJ)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

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  PER1A_ARMRU | P00433
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PER1A_ARMRU | P00433: 1atj 1gw2 1gwo 1gwt 1gwu 1gx2 1h55 1h57 1h58 1h5a 1h5c 1h5d 1h5e 1h5f 1h5g 1h5h 1h5i 1h5j 1h5k 1h5l 1h5m 1hch 1kzm 1w4w 1w4y 2atj 2ylj 3atj 4atj 6atj

(-) Related Entries Specified in the PDB File

6atj RECOMBINANT HORSERADISH PEROXIDASE C COMPLEX WITH FERULIC ACID