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(-) Description

Title :  THREE-DIMENSIONAL STRUCTURE OF ISONICOTINIMIDYLATED LIVER ALCOHOL DEHYDROGENASE
 
Authors :  B. Plapp, H. Eklund
Date :  16 Jan 84  (Deposition) - 18 Jul 84  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym./Biol. Unit :  A
Keywords :  Oxidoreductase (Nad(A)-Choh(D)) (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. V. Plapp, H. Eklund, T. A. Jones, C. I. Branden
Three-Dimensional Structure Of Isonicotinimidylated Liver Alcohol Dehydrogenase.
J. Biol. Chem. V. 258 5537 1983
PubMed-ID: 6343388
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ISONICOTINIMIDYLATED LIVER ALCOHOL DEHYDROGENASE
    Chains: A
    EC Number: 1.1.1.1
    Engineered: YES
    Organism Common: HORSE
    Organism Scientific: EQUUS CABALLUS
    Organism Taxid: 9796

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 25)

Asymmetric/Biological Unit (2, 25)
No.NameCountTypeFull Name
1NTN23Ligand/IonISONICOTINAMIDINE
2ZN2Ligand/IonZINC ION

(-) Sites  (25, 25)

Asymmetric Unit (25, 25)
No.NameEvidenceResiduesDescription
01AC1SOFTWARECYS A:46 , SER A:48 , HIS A:67 , CYS A:174BINDING SITE FOR RESIDUE ZN A 375
02AC2SOFTWARECYS A:97 , CYS A:100 , CYS A:103 , ASN A:109 , CYS A:111 , PHE A:319 , PHE A:322 , LYS A:323 , SER A:324BINDING SITE FOR RESIDUE ZN A 376
03AC3SOFTWARELYS A:5 , VAL A:41 , ALA A:42 , ALA A:70 , LEU A:166 , GLU A:167 , LYS A:168 , CYS A:170BINDING SITE FOR RESIDUE NTN A 377
04AC4SOFTWARELYS A:8 , VAL A:28 , ALA A:29 , ARG A:37 , ILE A:38 , ARG A:129 , TYR A:149 , THR A:150 , VAL A:151BINDING SITE FOR RESIDUE NTN A 378
05AC5SOFTWARELYS A:10 , VAL A:13 , TRP A:15 , SER A:22 , GLU A:24 , GLU A:25 , VAL A:26 , THR A:131 , CYS A:132 , ILE A:137BINDING SITE FOR RESIDUE NTN A 379
06AC6SOFTWARELYS A:18 , SER A:54BINDING SITE FOR RESIDUE NTN A 380
07AC7SOFTWARELYS A:19 , NTN A:387BINDING SITE FOR RESIDUE NTN A 381
08AC8SOFTWARELYS A:32 , LEU A:279 , CYS A:282 , GLY A:287 , VAL A:288 , SER A:289 , ARG A:312 , THR A:313BINDING SITE FOR RESIDUE NTN A 382
09AC9SOFTWARETHR A:2 , ALA A:3 , GLY A:4 , LYS A:5 , VAL A:6 , ILE A:7 , PRO A:30 , ARG A:37 , LYS A:39 , GLU A:74BINDING SITE FOR RESIDUE NTN A 383
10BC1SOFTWARELYS A:88 , ALA A:163BINDING SITE FOR RESIDUE NTN A 384
11BC2SOFTWAREILE A:90 , LYS A:99 , ILE A:172 , PHE A:176 , SER A:177 , VAL A:328 , LEU A:331BINDING SITE FOR RESIDUE NTN A 385
12BC3SOFTWARELYS A:113 , GLN A:124 , SER A:177 , THR A:178 , GLY A:179 , GLY A:181 , SER A:182 , VAL A:186 , ALA A:317 , PHE A:319 , GLY A:320 , GLY A:321BINDING SITE FOR RESIDUE NTN A 386
13BC4SOFTWARELYS A:135 , NTN A:381BINDING SITE FOR RESIDUE NTN A 387
14BC5SOFTWAREASP A:87 , LYS A:159BINDING SITE FOR RESIDUE NTN A 388
15BC6SOFTWARELYS A:168 , ILE A:346 , VAL A:349BINDING SITE FOR RESIDUE NTN A 389
16BC7SOFTWARELYS A:185 , NTN A:397 , NTN A:398BINDING SITE FOR RESIDUE NTN A 390
17BC8SOFTWARELYS A:32 , ALA A:33 , HIS A:34 , GLU A:35 , VAL A:36 , GLU A:78 , VAL A:80 , LYS A:188 , LYS A:315BINDING SITE FOR RESIDUE NTN A 391
18BC9SOFTWARELYS A:212BINDING SITE FOR RESIDUE NTN A 392
19CC1SOFTWARELYS A:226BINDING SITE FOR RESIDUE NTN A 393
20CC2SOFTWARELYS A:228BINDING SITE FOR RESIDUE NTN A 394
21CC3SOFTWARELYS A:228 , LYS A:231 , GLU A:366 , ILE A:368BINDING SITE FOR RESIDUE NTN A 395
22CC4SOFTWARELYS A:247BINDING SITE FOR RESIDUE NTN A 396
23CC5SOFTWARETHR A:82 , PRO A:106 , LYS A:185 , LYS A:325 , NTN A:390BINDING SITE FOR RESIDUE NTN A 397
24CC6SOFTWAREGLY A:98 , ASP A:326 , LYS A:330 , NTN A:390BINDING SITE FOR RESIDUE NTN A 398
25CC7SOFTWAREMET A:306 , LYS A:354 , GLU A:357BINDING SITE FOR RESIDUE NTN A 399

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:103 -A:111

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Leu A:61 -Pro A:62

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 7ADH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 7ADH)

(-) Exons   (0, 0)

(no "Exon" information available for 7ADH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:374
                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains d7adha1 A:1-163,A:340-374 Alcohol dehydrogenase                                                                                                                    d7adha2 A:164-339 Alcohol dehydrogenase                                                                                                                                         d7adha1 A:1-163,A:340-374           SCOP domains
               CATH domains 7adhA01 A:1-178,A:318-374 Medium-chain alcohol dehydrogenases, catalytic domain                                                                                                   7adhA02 A:179-317 NAD(P)-binding Rossmann-like Domain                                                                                      7adhA01 A:1-178,A:318-374                                 CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeee.......eeeeeeee....eeeeeeeeeeeehhhhhhhh........eee...eeeeeeeeeee.......eeeeeee....................................eeee..eeee.........eeeee...eeeee.......hhhhhhhhhhhhhhhhhhhhh....eeeeeeeehhhhhhhhhhhhhhh..eeeeeee....hhhhhhhh.eee.........hhhhhhhhh....eeeeeee.hhhhhhhhhhhh....eeeeeee...........hhhhhhheeeeeee.....hhhhhhhhhhhhhhh........eeeeee..hhhhhhhhhhh...eeeeee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 7adh A   1 STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLLRSGESIRTILTF 374
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 7ADH)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

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        ADH1E_HORSE | P00327: 1a71 1a72 1adb 1adc 1adf 1adg 1axe 1axg 1bto 1het 1heu 1hf3 1hld 1ju9 1lde 1ldy 1mg0 1mgo 1n8k 1n92 1p1r 1qlh 1qlj 1qv6 1qv7 1ye3 2jhf 2jhg 2ohx 2oxi 3bto 3oq6 4dwv 4dxh 4nfh 4nfs 4ng5 4xd2 5adh 5cdg 5cds 5cdt 5cdu 5kcp 5kcz 5kj1 5kj6 5kjc 5kje 5kjf 5vj5 5vjg 5vkr 5vl0 5vn1 6adh 8adh

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