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(-) Description

Title :  CRYSTAL STRUCTURE OF THE SMC HEAD DOMAIN WITH A COILED COIL AND JOINT DERIVED FROM PYROCOCCUS YAYANOSII
 
Authors :  H. Lee, H. Noh, B. -H. Oh
Date :  05 Apr 17  (Deposition) - 07 Jun 17  (Release) - 07 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A
Keywords :  Condensin, Smc, Head Domain, Abc-Atpase, Dna Binding Protein, Cell Cycle (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. -L. Diebold-Durand, H. Lee, L. B. R. Avila, H. Noh, H. -C. Shin, H. Im, F. P. Bock, F. Buermann, A. Durand, A. Basfeld, S. Ham, J. Basquin, B. -H. Oh, S. Gruber
Structure Of Full-Length Smc And Rearrangements Required Fo Chromosome Organization
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CHROMOSOME PARTITION PROTEIN SMC
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 1-254 AND 907-1177
    Gene: SMC, PYCH_01200
    Organism Scientific: PYROCOCCUS YAYANOSII (STRAIN CH1 / JCM 16557)
    Organism Taxid: 529709
    Strain: CH1 / JCM 16557

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5XEI)

(-) Sites  (0, 0)

(no "Site" information available for 5XEI)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5XEI)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Glu A:964 -Pro A:965

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5XEI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5XEI)

(-) Exons   (0, 0)

(no "Exon" information available for 5XEI)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:517
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee.........eeee....eeeee.......hhhhhhhhhhh...........hhhhhh............eeeeeeee...........eeeeeeee.....eeeee..eeehhhhhhhhhhhh..hhhhh.ee..hhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee....hhhhh.eeeeee......ee.hhh.hhhhhhhhhhhhhhhhhhh...eeeee......hhhhhhhhhhhhhhhh...eeeeee.hhhhhhhh.eeeeeeee..eeeeee.hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5xei A    1 MPYIEKLELKGFKSYGNRKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRATRISDLIFAGSKGEPPAKYAEVAIYFNNEDRGFPIDEDEVVIKRRVYPDGRSAYWLNGRRATRSEILDLLSAAMISPEGYNLVLQGDITKFIKMSPLERRQLIDEISGIAEYDAKKEKALEELKQAEENLARVDLLIKEVKKQLDKLEKERNDALRYLDLKERLERARVALLLGEIKRLESMIDEGERKRAEIEENTIKVKSAQLRIQLEEKRRELKHFDAALIRSVKEVSLDLEVLRKEIEDMEAEIKALEPVNMKAIEDFEVVERRYLELKSKREKLEAEKESIIEFINEIEKEKKNVFMRTLEAIAKNFSELFAKLSPGGSARLILENPEDPFSGGLEIEAKPAGKDVKRIEAMSGGEKALTALAFIFAIQRFKPAPFYLFDEIDAHLDDANVKRVADLIKESSRESQFIVITLRDVMMANADKIIGVSMRDGVSRVVSLSLEKAMKILEEAKK 1169
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250   ||  912       922       932       942       952       962       972       982       992      1002      1012      1022      1032      1042      1052      1062      1072      1082      1092      1102      1112      1122      1132      1142      1152      1162       
                                                                                                                                                                                                                                                                                       254|                                                                                                                                                                                                                                                                      
                                                                                                                                                                                                                                                                                        907
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5XEI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5XEI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5XEI)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Glu A:964 - Pro A:965   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        F8AFS8_PYRYC | F8AFS8: 5xg2

(-) Related Entries Specified in the PDB File

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