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(-) Description

Title :  CRYSTAL STRCUTURE OF METB FROM CORYNEBACTERIUM GLUTAMICUM
 
Authors :  H. -Y. Sagong, K. -J. Kim
Date :  16 Feb 17  (Deposition) - 01 Mar 17  (Release) - 01 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.51
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Plp-Binding Domain, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. -Y. Sagong, K. -J. Kim
Structural Insight Into Substrate Specificity Of Cystathionine Gamma-Synthase From Corynebacterium Glutamicu
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CYSTATHIONINE BETA-LYASES/CYSTATHIONINE GAMMA-SYNTHASES
    Chains: A
    EC Number: 2.5.1.48
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: PET30A
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: CGL2446
    Organism Scientific: CORYNEBACTERIUM GLUTAMICUM (STRAIN ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
    Organism Taxid: 196627
    Strain: ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric Unit (3, 6)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2MG2Ligand/IonMAGNESIUM ION
3PLP1Ligand/IonPYRIDOXAL-5'-PHOSPHATE
Biological Unit 1 (2, 16)
No.NameCountTypeFull Name
1GOL12Ligand/IonGLYCEROL
2MG-1Ligand/IonMAGNESIUM ION
3PLP4Ligand/IonPYRIDOXAL-5'-PHOSPHATE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:52 , ARG A:54 , SER A:81 , GLY A:82 , MET A:83 , TYR A:107 , ASN A:154 , ASP A:179 , PHE A:182 , SER A:201 , THR A:203 , LYS A:204 , GLY A:214binding site for residue PLP A 401
2AC2SOFTWAREASP A:273 , THR A:280 , VAL A:281 , LEU A:286 , ASN A:288 , HOH A:586 , HOH A:712binding site for residue GOL A 402
3AC3SOFTWAREILE A:15 , TYR A:19 , ILE A:28 , ASN A:29 , LYS A:252 , GLU A:337 , HOH A:502 , HOH A:508 , HOH A:627binding site for residue GOL A 403
4AC4SOFTWAREARG A:91 , LYS A:95 , GLU A:227 , HOH A:554binding site for residue GOL A 404
5AC5SOFTWAREGLU A:71 , GLN A:189 , PRO A:190 , LEU A:191binding site for residue MG A 405
6AC6SOFTWARETHR A:37 , PHE A:38 , GLN A:40 , GLU A:51 , ALA A:330 , GLU A:331binding site for residue MG A 406

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5X5H)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Thr A:151 -Pro A:152
2Asn A:154 -Pro A:155

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5X5H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5X5H)

(-) Exons   (0, 0)

(no "Exon" information available for 5X5H)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:385
                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh......................eee..ee..........hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhh....eeeee...hhhhhhhhhhhhhhhh.eeeee...hhhhhhhhh...eeeeeee..........hhhhhhhh......eeeee...hhhhhhhhhhhh..eeeee.............eeeee.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee........hhhhhhhhh.....eeeeee.hhhhhhhhhhhhh...ee.........eee......hhhhh.........eeeee....hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5x5h A   3 FDPNTQGFSTASIHAGYEPDDYYGSINTPIYASTTFAQNAPNELRKGYEYTRVGNPTIVALEQTVAALEGAKYGRAFSSGMAATDILFRIILKPGDHIVLGNDAYGGTYRLIDTVFTAWGVEYTVVDTSVVEEVKAAIKDNTKLIWVETPTNPALGITDIEAVAKLTEGTNAKLVVDNTFASPYLQQPLKLGAHAVLHSTTKYIGGHSDVVGGLVVTNDQEMDEELLFMQGGIGPIPSVFDAYLTARGLKTLAVRMDRHCDNAEKIAEFLDSRPEVSTVLYPGLKNHPGHEVAAKQMKRFGGMISVRFAGGEEAAKKFCTSTKLICLAESLGGVESLLEHPATMTHQSAAGSQLEVPRDLVRISIGIEDIEDLLADVEQALNNLH 387
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5X5H)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5X5H)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5X5H)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)

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