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(-) Description

Title :  CRYSTAL STRUCTURE OF MOUSE DNA METHYLTRANSFERASE 1 (T1505A MUTANT)
 
Authors :  K. Kanada, K. Takeshita, I. Suetake, S. Tajima, A. Nakagawa
Date :  10 Jan 17  (Deposition) - 24 May 17  (Release) - 24 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.27
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Cpg Sequence, Mutant, Epigenetics, Hemimethylated Dna, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Kanada, K. Takeshita, I. Suetake, S. Tajima, A. Nakagawa
Conserved Threonine 1505 In The Catalytic Domain Stabilizes Mouse Dna Methyltransferase 1
J. Biochem. 2017
PubMed-ID: 28369487  |  Reference-DOI: 10.1093/JB/MVX024

(-) Compounds

Molecule 1 - DNA (CYTOSINE-5)-METHYLTRANSFERASE 1
    Chains: A
    EC Number: 2.1.1.37
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Taxid: 7108
    Fragment: UNP RESIDUES 29-1620
    Gene: DNMT1, DNMT, MET1, UIM
    Mutation: YES
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: MET-1,DNA METHYLTRANSFERASE MMUI,M.MMUI,MCMT

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1ZN4Ligand/IonZINC ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:359 , CYS A:362 , CYS A:420 , HIS A:424binding site for residue ZN A 2001
2AC2SOFTWARECYS A:656 , CYS A:659 , CYS A:662 , CYS A:694binding site for residue ZN A 2002
3AC3SOFTWAREHIS A:796 , CYS A:823 , CYS A:897 , CYS A:900binding site for residue ZN A 2003
4AC4SOFTWARECYS A:1479 , CYS A:1481 , CYS A:1487 , HIS A:1504binding site for residue ZN A 2004

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5WY1)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5WY1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5WY1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5WY1)

(-) Exons   (0, 0)

(no "Exon" information available for 5WY1)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:1140
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........................eehhhhhh..........eeeeeeeeeee..................eeeeeeee............eeeeee....eeeee........eeeee....eeee......hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh..................hhhhhhhhhhhhh........................hhhhhhhhhhhh.................ee......eeee........eee..eeee..eee...eeeeee.......eeeeeeeeeee....eeeeeeeeee.hhh.hhhhh...eeeeeeeeeeee...eeeee.eee..............eeeeeeee....eee.......hhhhh...hhhhhhhhhhhhhhh.eeeeeeeee..eeeeeeeee..eeee...eeeehhhhh...............hhhhhhhhh.......eeeeeee....ee..ee.....eeeeeeee......hhhhh.......eeeeeeeeeeee.hhh.eeeeeee......hhhhhhhh...eeeeeeee......ee..hhhhh.....eeeeee....hhhhhhhhhhh.eeeeeee..hhhhhhhhhhhh...eee..hhhhhhhhhh...................eeee.............hhhhhhhhhhhhhhhhhhhhhhhh..eeeeeee.hhhhhhhhhhhhhhhhhhhhhh.ee..eeee.hhhh.....eeeeeeee................hhhhhh..ee....ee...............hhhhhhh............eee......hhhhhhhhh.....eee.......hhhhhhhhhh.......hhhhh....ee.....ee.......................hhhhhh...............hhhhhhhhhhhhhh.....................................hhhhhhhhhh.........hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5wy1 A  357 PKCPECGQHLDDPNLKYQQHPEDAVDEPQMLTSEKLSYEDSPMHRFTSFSVYCSRGHLCPVDTGLIEKNVELYFSGCAKAIHDENPSMEGGINGKNLGPINQWWLSGFDGGEKVLIGFSTAFAEYILMEPSKEYEPIFGLMQEKIYISKIVVEFLQNNPDAVYEDLINKIETTVPPSTINVNRFTEDSLLRHAQFVVSQVESYDEAKDDDETPIFLSPCMRALIHLAGVSLGQRRATRAPTKATTTKLVYQIFDTFFSEQIEKRRRCGVCEVCQQPACLKRRCPNLAVKEADDDEEADDEMPSPKKLHQGKKKKQNKDRISWLGQPMKIERTYYQKVSIDEEMLEVGDCVSVIPDDSSKPLYLARVTALWEDKNGQMMFHAHWFCAGTDTVLGATSDPLELFLVGECENMQLSYIHSKVKVIYKAPSENWAMEGGKTYFFQLWYNQEYARFESPPKTQPTEDNKHKFCLSCIRLAELRQKEMPKVLEQIEEVDGRVYCSSITKNGVVYRLGDSVYLPPEAFTFNIKVKKDPVNETLYPEHYRKYSLDAPEPYRIGRIKEIHCGKKKGKVNEADIKLRLYKFYRPENTHRSYNGSYHTDINMLYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQDYSQGGPDRFYFLEAYNSKTKNFEDPPNHARSKLPKLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNPGTTVFTEDCNVLLKLVMAGEVTNSLGQRLPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSYRRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKKFVSNITRLSSGPFRTITVRDTMSDLPEIQNGASNSEIPYNGEPLSWFQRQLRGSHYQPILRDHICKDMSPLVAARMRHIPLFPGSDWRDLPNIQVRLGDGVIAHKLQYTFHDVKNGYSSTGALRGVCSCAEGKACDPESRQFSTLIPWCLPHAGNRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDSYRFFGNILDRHRQVGNAVPPPLAKAIGLEIKLCLLSSARESASAAVKA 1612
                                   366       376       386      |407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       618       628       638  ||   659     ||691       701       714       724       734       744|      756       766       776       786       796       806       816       826       836       846    || 869       879       889       899       909       919       929       939       949      |966       976    || 993      1003      1013      1023      1033      1043      1053      1063      1073      1083      1093      1103    ||1142      1152      1162      1172      1182      1192      1202      1212      1222      1232      1242      1252      1262      1272      1282      1292      1302      1312      1322      1332      1342      1352      1362      1372      1382      1392      1402      1412      1422      1432      1442      1452      1462      1472      1482      1492      1502      1512      1522      1532      1542      1552      1562      1572      1582      1592      1602      1612
                                                              393|                                                                                                                                                                                                     605|                     641|         665|                   710|                           744|                                                                                                     851|                                                                                        956|              981|                                                                                                                   1108|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
                                                               405                                                                                                                                                                                                      617                      653          688                    714                            747                                                                                                      865                                                                                         964               989                                                                                                                    1138
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5WY1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5WY1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5WY1)

(-) Gene Ontology  (74, 74)

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        DNMT1_MOUSE | P13864: 3av4 3av5 3av6 3pt6 3pt9 4da4

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