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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN NSUN6
 
Authors :  R. J. Liu, T. Long, E. D. Wang
Date :  04 Jan 17  (Deposition) - 28 Jun 17  (Release) - 28 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.82
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Rna Modification, M5C Methyltransferase, Nsun, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. J. Liu, T. Long, J. Li, H. Li, E. D. Wang
Structural Basis For Substrate Binding And Catalytic Mechanism Of A Human Rna:M5C Methyltransferase Nsun6
Nucleic Acids Res. 2017
PubMed-ID: 28531330  |  Reference-DOI: 10.1093/NAR/GKX473

(-) Compounds

Molecule 1 - PUTATIVE METHYLTRANSFERASE NSUN6
    Chains: A, B
    EC Number: 2.1.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI-PICHIA PASTORIS SHUTTLE VECTOR PPPARG4
    Expression System Taxid: 1182032
    Gene: NSUN6, NOPD1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: NOL1/NOP2/SUN AND PUA DOMAIN-CONTAINING PROTEIN 1, NOL1/NOP2/SUN DOMAIN FAMILY MEMBER 6

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5WWQ)

(-) Sites  (0, 0)

(no "Site" information available for 5WWQ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5WWQ)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Ala A:244 -Pro A:245
2Pro A:310 -Pro A:311
3Arg A:332 -Pro A:333
4Glu A:400 -Pro A:401
5Ala B:244 -Pro B:245
6Pro B:310 -Pro B:311
7Arg B:332 -Pro B:333
8Glu B:400 -Pro B:401

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5WWQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5WWQ)

(-) Exons   (0, 0)

(no "Exon" information available for 5WWQ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:441
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeee.....hhhhhhhhhhhhhhhhh.......ee......eeeee.............eeeehhhhhhhhhhh..ee...eeee........eeeeeee.......eeeeeeeee..hhhhhh.......eeeeeee..............eee.hhhhhhhhhhhh.....eeee.....hhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhhh....eeeee.hhhhh.........eeeeeee............ee..hhhhhhhhhhhhhhhhhhhhhheeeeeeeeeee.......hhhhhhhhhhhh..eee.................hhhhhhh.eee...........hhhhhhhhhhhh...eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5wwq A   2 SIFPKISLRPEVENYLKEGFMNKEIVTALGKQEAERKFETLLKHLSHPPSFTTVRVNTHLASVQHVKNLLLDELQKQFNGLSVPILQHPDLQDVLLIPVIGPRKNIKKQQCEAIVGAQCGNAVLRGAHVYAPGIVSASQFMKAGDVISVYSDIKGKCKTKVFLGNGISELSRKEIFSGLLKGMGIRMTEPVYLSPSFDSVLPRYLFLQNLPSALVSHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQGEVIALDKIFNKVEKIKQNALLLGLNSIRAFCFDGTKAVKPPFLPESFDRILLDAPCSGMGQRPNMACTWSVKEVASYQPLQRKLFTAAVQLLKPEGVLVYSTCTITLAENEEQVAWALTKFPCLQLQPQEPQIGGEGMRGAGLSCEQLKQLQRFDPSAVPLPDTARREDMLRLANKDSIGFFIAKFVKCKST 469
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       169       179       191       201       211       221       231       241       251       261       271       281       291       311       321       331       341       351       361       371       381       391       401       411       421       431  ||   448       458       468 
                                                                                                                                                                                       159|                 188|                                                                                                         299|                                                                                                                         434|                           
                                                                                                                                                                                        168                  191                                                                                                          310                                                                                                                          442                           


Chain B from PDB  Type:PROTEIN  Length:446
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeee.....hhhhhhhhhhhhhhhhh.......ee......eeeee.............eeeehhhhhhhhhhh..ee...eeee........eeeeee.................eeeeeeee..hhhhhh..hhhhh..eeeeeee..............eee.hhhhhhhhhhhh.....eeee.....hhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhhh....eeeee.hhhhh.............eeeeeee............ee..hhhhhhhhhhhhhhhhhhhhhheeeeeeeeeee.......hhhhhhhhhhhh..eeee................hhhhhh..eee..........hhhhhhh...eeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5wwq B   2 SIFPKISLRPEVENYLKEGFMNKEIVTALGKQEAERKFETLLKHLSHPPSFTTVRVNTHLASVQHVKNLLLDELQKQFNGLSVPILQHPDLQDVLLIPVIGPRKNIKKQQCEAIVGAQCGNAVLRGAHVYAPGIVSASQFMKAGDVISVYSDIKGKCKKGAKEFDGTKVFLGNGISELSRKEIFSGLPELKGMGIRMTEPVYLSPSFDSVLPRYLFLQNLPSALVSHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQGEVIALDKIFNKVEKIKQNALLLGLNSIRAFCFDGTKAVKLDMEPPFLPESFDRILLDAPCSGMGQRPNMACTWSVKEVASYQPLQRKLFTAAVQLLKPEGVLVYSTCTITLAENEEQVAWALTKFPCLQLQPQEPQIGGEGMRGAGLSCEQLKQLQRFDPSAVPLPDMLRLANKDSIGFFIAKFVKC 466
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301||     317       327       337       347       357       367       377       387       397       407       417       427     ||450       460      
                                                                                                                                                                                                                                                                                                                                      302|                                                                                                                         433|                   
                                                                                                                                                                                                                                                                                                                                       309                                                                                                                          447
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5WWQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5WWQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5WWQ)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)

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  Sites
(no "Sites" information available for 5wwq)
 
  Cis Peptide Bonds
    Ala A:244 - Pro A:245   [ RasMol ]  
    Ala B:244 - Pro B:245   [ RasMol ]  
    Arg A:332 - Pro A:333   [ RasMol ]  
    Arg B:332 - Pro B:333   [ RasMol ]  
    Glu A:400 - Pro A:401   [ RasMol ]  
    Glu B:400 - Pro B:401   [ RasMol ]  
    Pro A:310 - Pro A:311   [ RasMol ]  
    Pro B:310 - Pro B:311   [ RasMol ]  
 
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  5wwq
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  NSUN6_HUMAN | Q8TEA1
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  2.1.1.-
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NSUN6_HUMAN | Q8TEA1: 5wwr 5wws 5wwt

(-) Related Entries Specified in the PDB File

5wwr 5wws 5wwt