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(-) Description

Title :  CRYSTAL STRUCTURE OF A PROTEIN OF UNKNOWN FUNCTION YCEH/ECK1052 INVOLVED IN MEMBRANE BIOGENESIS FROM ESCHERICHIA COLI
 
Authors :  P. J. Stogios, T. Skarina, C. Mcchesney, A. Savchenko, W. F. Anderson, C Structural Genomics Of Infectious Diseases (Csgid)
Date :  26 May 17  (Deposition) - 07 Jun 17  (Release) - 07 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.48
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Unknown Function, Membrane Biogenesis, Alpha/Beta Protein, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, National Institute Of Allergy And Infectious Diseases, Niaid (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. J. Stogios
Crystal Structure Of A Protein Of Unknown Function Yceh/Eck1052 Involved In Membrane Biogenesis From Escherichia Coli
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UPF0502 PROTEIN YCEH
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG53
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: YCEH, Z1704, ECS1445
    Organism Taxid: 83334

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1PEG1Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:69 , ARG A:84 , PHE A:90binding site for residue PEG A 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5VYV)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Tyr A:27 -Pro A:28
2Glu A:45 -Pro A:46
3Tyr B:27 -Pro B:28
4Glu B:45 -Pro B:46

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5VYV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5VYV)

(-) Exons   (0, 0)

(no "Exon" information available for 5VYV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:173
                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhh.eehhhhhhhhh...........hhhhhhhhhhhhhhh..eeee........eeee............hhhhhhhhhhhhhhh..hhhhhhhhh.......hhhhhhhhhhhhhhh.....eee...........eee........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5vyv A   1 MKYQLTALEARVIGCLLEKQVTTPEQYPLSVNGVVTACNQKTNREPVMNLSESEVQEQLDNLVKRHYLRTVSGFGNRVTKYEQRFCNSEFGDLKLSAAEVALITTLLLRGAQTPGELRSRAARMYEFSDMAEVELTLEQLANREDGPFVVRLAREPGKRESRYMHLFSGEVED 173
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170   


Chain B from PDB  Type:PROTEIN  Length:170
                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhh.....eehhhhhhhhh...........hhhhhhhhhhhhhhh..eeeee...eeeee............hhhhhhhhhhhhhhh..hhhhhhhhh.........hhhhhhhhhhhh......eee...........eee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5vyv B   1 MKYQLTALEARVIGCLLEKQVTTPEQYPLSVNGVVTACNQKTNREPVMNLSESEVQEQLDNLVKRHYLRTVSGRVTKYEQRFCNSEFGDLKLSAAEVALITTLLLRGAQTPGELRSRAARMYEFSDMAEVELTLEQLANREDGPFVVRLAREPGKRESRYMHLFSGEVED 173
                                    10        20        30        40        50        60        70  ||    83        93       103       113       123       133       143       153       163       173
                                                                                                   73|                                                                                                
                                                                                                    77
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5VYV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5VYV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5VYV)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5VYV)

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