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(-) Description

Title :  CRYSTAL STRUCTURE OF THE EXTENDED TUDOR DOMAIN FROM BMPAPI
 
Authors :  P. A. Hubbard, X. Pan, R. Mcnally, A. Ohtaki, S. Honda, Y. Kirino, R. Mura
Date :  24 May 17  (Deposition) - 14 Jun 17  (Release) - 14 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.05
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Bmpapi, Tudor, Sdma, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. A. Hubbard, X. Pan, R. Mcnally, A. Ohtaki, S. Honda, Y. Kirino, R. Murali
Structural Studies Of The Tudor Domain From The Bombyx Homolog Of Drosophila Papi: Implication To Pirna Biogenesis
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - TUDOR AND KH DOMAIN-CONTAINING PROTEIN HOMOLOG
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: PAPI
    Organism Common: SILK MOTH
    Organism Scientific: BOMBYX MORI
    Organism Taxid: 7091
    Synonym: PARTNER OF PIWIS PROTEIN,BMPAPI

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5VY1)

(-) Sites  (0, 0)

(no "Site" information available for 5VY1)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5VY1)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5VY1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5VY1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5VY1)

(-) Exons   (0, 0)

(no "Exon" information available for 5VY1)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:204
                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeeeeee..eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhh.........eeeee......eeeeeeeeeee.......eeeeeee.....eeeee.hhhee.hhhhhh.....eeeee...ee..hhhhhhhhhhhhh.....eeeeeeeeeeee........eeeeeeeee........hhhhhhhhh..ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5vy1 A  -1 AGPSIEVYVSAVSSPSRFWVQFVGPQVAQLDDLVAHMTEYYSKKENREAHTLRHVSVGQVVAAVFRHDGRWYRARVHDIRPNEFDSSQQVADVFYLDYGDSEYVATHELCELRADLLRLRFQAMECFLAGVRPAWHPQAVERFEELTQVARWKALVSRTCTYKKTATAEGEKDKEIPGIKLFDVTDEGELDVGAVLVAEGWAVA 462
                            ||     253       263       273       283       293       303       313       323       333       343       353       363       373   ||  398       408       418       428       438       448       458    
                            ||                                                                                                                                 377|                                                                     
                           -1|                                                                                                                                  393                                                                     
                           245                                                                                                                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:185
                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeee..eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhh.........eeeee....eeeeeeeeeeee..eeeeeeeeeee.....eeeee.hhhee.hhhhhh.....eeeee.......hhhhhhhhhhhhh.....eeeeeeeee...eeeeee.....hhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5vy1 B 246 PSIEVYVSAVSSPSRFWVQFVGPQVAQLDDLVAHMTEYYSKKENREAHTLRHVSVGQVVAAVFDGRWYRARVHDIRPNEFDSSQQVADVFYLDYGDSEYVATHELCELRADLLRLRFQAMECFLAGVRPKWHPQAVERFEELTQVARWKALVSRTCTYKKIPGIKLFDVGELDVGAVLVAEGWAV 461
                                   255       265       275       285       295       305  ||   317       327       337       347       357       367       392       402       412       422|      446       456     
                                                                                        308|                                                              376|                           422|     442|               
                                                                                         311                                                               392                            434      446
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5VY1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5VY1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5VY1)

(-) Gene Ontology  (4, 4)

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 Related Entries

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UniProtKB/Swiss-Prot
        TDRKH_BOMMO | H9JD76: 5vqg 5vqh

(-) Related Entries Specified in the PDB File

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