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(-) Description

Title :  CRYSTAL STRUCTURE OF THE CLOCK TRANSCRIPTION DOMAIN EXON19 IN COMPLEX WITH A REPRESSOR
 
Authors :  Z. Hou, L. Su, J. Pei, N. V. Grishin, H. Zhang
Date :  19 Apr 17  (Deposition) - 07 Jun 17  (Release) - 07 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.86
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Keywords :  Circadian Rhythm, Clock Protein, Transcription Activation, Repressor, Coiled Coil, Cipc, Circadian Clock, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. Hou, L. Su, J. Pei, N. V. Grishin, H. Zhang
Crystal Structure Of The Clock Transcription Domain Exon19 In Complex With A Repressor
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CIRCADIAN LOCOMOTER OUTPUT CYCLES PROTEIN KAPUT
    Chains: A, B, D, E
    EC Number: 2.3.1.48
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Fragment: UNP RESIDUES 516-560
    Gene: CLOCK
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: MCLOCK
 
Molecule 2 - CLOCK-INTERACTING PACEMAKER
    Chains: C, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Fragment: UNP RESIDUES 352-414
    Gene: CIPC, KIAA1737
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: CLOCK-INTERACTING CIRCADIAN PROTEIN

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): ABC   
Biological Unit 2 (1x):    DEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 16)

Asymmetric Unit (1, 16)
No.NameCountTypeFull Name
1MSE16Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 5VJI)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5VJI)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5VJI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5VJI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5VJI)

(-) Exons   (0, 0)

(no "Exon" information available for 5VJI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:50
                                                                                 
               SCOP domains -------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------- Transcript
                  5vji A  1 GAmDPEFSAQLGAmQHLKDQLEQRTRmIEANIHRQQEELRKIQEQLQmVH 50
                              |     10   |    20      | 30        40       |50
                              |         14-MSE       27-MSE               48-MSE
                              3-MSE                                           


Chain B from PDB  Type:PROTEIN  Length:42
                                                                         
               SCOP domains ------------------------------------------ SCOP domains
               CATH domains ------------------------------------------ CATH domains
               Pfam domains ------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------ PROSITE
                 Transcript ------------------------------------------ Transcript
                  5vji B  7 FSAQLGAmQHLKDQLEQRTRmIEANIHRQQEELRKIQEQLQm 48
                                   |16        26|       36        46 |
                                  14-MSE       27-MSE               48-MSE


Chain C from PDB  Type:PROTEIN  Length:57
                                                                                        
               SCOP domains --------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------- Transcript
                  5vji C  2 NTLVVLHKSGLLEITLKTKELIRQNQATQAELDQLKEQTQmFIEATKSWAKLQASLT 63
                                    11        21        31        41|      |56       
                                                                   42-MSE 49|        
                                                                           55        


Chain D from PDB  Type:PROTEIN  Length:42
                                                                         
               SCOP domains ------------------------------------------ SCOP domains
               CATH domains ------------------------------------------ CATH domains
               Pfam domains ------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------ PROSITE
                 Transcript ------------------------------------------ Transcript
                  5vji D  8 SAQLGAmQHLKDQLEQRTRmIEANIHRQQEELRKIQEQLQmV 49
                                  | 17        27        37        47| 
                                 14-MSE       27-MSE               48-MSE


Chain E from PDB  Type:PROTEIN  Length:49
                                                                                
               SCOP domains ------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------- Transcript
                  5vji E  1 GAmDPEFSAQLGAmQHLKDQLEQRTRmIEANIHRQQEELRKIQEQLQmV 49
                              |     10   |    20      | 30        40       | 
                              |         14-MSE       27-MSE               48-MSE
                              3-MSE                                          


Chain F from PDB  Type:PROTEIN  Length:56
                                                                                       
               SCOP domains -------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------- Transcript
                  5vji F  2 NTLVVLHKSGLLEITLKTKELIRQNQATQAELDQLKEQTQmFIEATKWAKLQASLT 63
                                    11        21        31        41|     ||57      
                                                                   42-MSE48|        
                                                                          55
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5VJI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5VJI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5VJI)

(-) Gene Ontology  (50, 56)

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        CLOCK_MOUSE | O08785: 4f3l

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